Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006419

Physical Location & Seq

Genomic Coordinates Forward (+)

67887274 .. 67889668

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGATGGGTTTTGTGAAGAATTGGTTCAAATGGTCGCAGCTAGTTTTAGCTATGGTGATGGTGCAGATGTTTGTAGCAGGGATGAACTTGCTTTCGAAAGTGATTCTGAGTGAGGGAAGCTTCATTTTTGCACTCATGGCGTATCGGCATGTGGTTGCGGCCATTTGTGTTGCCCCTTTTGCTCTCTGTTTGGAAAGGATCAAGGAACAGAAGTTAGGTTGGTTAGTTTGGTTCTGGCTATTTGTCAATGCCTTGACTGGGATAACAGCAGCAATGGCATTGTTTTACTATGGCCTCCGAGACACCACGGCTACATATGCTGCCAACTTTCTCAACTTAATTCCCATAGCCACCTTTCTCCTCTCCACCATCACAGGAATAGAGAAACTGAATCTGAAAACAAGAGCAGGGAAGATTAAGTGTCTGGGGGTGATAGTATGTGTTGGGGGAGCCGTAACTACTAGCCTTTACAAGGGAGAAGCATTTTATTTGGTTCATCACAGTAATAATCACCATCACATCACTGTTGATACATCTTATGCTCATTGGGCTCGCGGCACTATCATGCTCTTTTGTAGCTGCTTCTCCTATTCTATGTGGTTCATAGCGCAAGTTAAATTGCTCAAAATATTTCCACTGAAATATTGGGCAACAATGTTAATGTGCATCATGGCAGCCCTTCAATCTACAGTCATAGGCTTATGTTTAGACACAAGTACAGCTTCGTGGAGAATAGGGTGGAATCTGCAACTAGTTACCATACTTTATTCGGGCGCACTAGCAACAGCTGCAACATTCTGCTTACTTTCATGGGCAATCTCAGCCCAAGGACCTCTCTATCCTCCTATGTTCAATCCATTGTCTCTCATTTTTGTGGCAATATCAGGAGCTCTCATACTCGGTGAAGAGATTAGAATGGGAACCTTGTTGGGCATGGTAATGATCATACTTGGGTTGTACTCGTTTTTGTGGGGTAAACGGAAGGAGACGAAAAGTGCATCTTTGCCGGAACAAGCAAAAACAAATGCTGAGCTCACAGGGTCTCAGTTGACAGCTGCAGTTGTGCCGACTACTTCACCAGATAACTGTCAACCCTGCACTGATAGCATTTCTGTTGATGTTGAAGATGGTTTAAAAACCACAGAAAATCCAAGAGGGCTTGATAATAAGCGAAGAACTATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

396

Amino Acids

43.79

Weight (kDa)

8.97

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	16 - 147	1.1e-10	EamA-like transporter family
EamA	PF00892	186 - 322	3.2e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100
malus_domestica	MD01G1230200.v1.1
prunus_persica	Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383151
rosa_laevigata	RLG00000026126
rosa_multiflora	Rmu_sc0008563.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277540
rosa_rugosa	Rorug01G0439200 Rorug01G0439200 Rorug01G0439200 Rorug01G0439200
rosa_samantha	Rh1AG464800 Rh1BG422100 Rh1CG435400 Rh1DG454800
rosa_wichuraiana	Rw1G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	558
AciI	CCGC	2 cut(s)	161, 558
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	162
AfaI	GTAC	2 cut(s)	721, 962
AfiI	CCNNNNNNNGG	2 cut(s)	261, 475
AgsI	TTSAA	4 cut(s)	31, 686, 856, 1127
AhlI	ACTAGT	1 cut(s)	754
AluBI	AGCT	9 cut(s)	43, 53, 123, 582, 725, 791, 893, 1036, 1058
AluI	AGCT	9 cut(s)	43, 53, 123, 582, 725, 791, 893, 1036, 1058
Alw21I	GWGCWC	2 cut(s)	895, 1038
Alw26I	GTCTC	4 cut(s)	297, 870, 983, 1050
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	162, 295
ApeKI	GCWGC	7 cut(s)	40, 272, 323, 582, 677, 791, 1058
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	613, 779
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	5 cut(s)	70, 445, 506, 917, 1071
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	833
BanII	GRGCYC	3 cut(s)	556, 895, 1038
Bbv12I	GWGCWC	2 cut(s)	895, 1038
BbvI	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
BccI	CCATC	4 cut(s)	55, 380, 525, 1124
BceAI	ACGGC	2 cut(s)	327, 440
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	4 cut(s)	297, 870, 983, 1050
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	4 cut(s)	44, 465, 755, 782
BfmI	CTRYAG	2 cut(s)	690, 1059
BisI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
BlpI	GCTNAGC	1 cut(s)	1032
BlsI	GCNGC	9 cut(s)	42, 163, 274, 325, 560, 584, 679, 793, 1060
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	2 cut(s)	454, 925
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	678, 1010
BmuI	ACTGGG	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	1032
Bpu14I	TTCGAA	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	1050
BsaJI	CCNNGG	2 cut(s)	309, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 475
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	309, 829
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	261, 475
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	101, 837, 1023, 1061
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
BsgI	GTGCAG	2 cut(s)	86, 1084
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	164, 297
BsiHKAI	GWGCWC	2 cut(s)	895, 1038
BsiSI	CCGG	1 cut(s)	1010
BslI	CCNNNNNNNGG	2 cut(s)	261, 475
BsmAI	GTCTC	4 cut(s)	297, 870, 983, 1050
BsmBI	CGTCTC	1 cut(s)	983
BsnI	GGCC	2 cut(s)	164, 297
Bso31I	GGTCTC	1 cut(s)	1050
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	556, 895, 1038
Bsp143I	GATC	2 cut(s)	201, 945
Bsp1720I	GCTNAGC	1 cut(s)	1032
BspACI	CCGC	2 cut(s)	161, 558
BspANI	GGCC	2 cut(s)	164, 297
BspCNI	CTCAG	4 cut(s)	102, 836, 1024, 1060
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	454, 925
BspMAI	CTGCAG	1 cut(s)	1063
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	1050
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	309, 829
BssMI	GATC	2 cut(s)	201, 945
BssT1I	CCWWGG	1 cut(s)	829
Bst4CI	ACNGT	4 cut(s)	506, 529, 694, 1091
Bst6I	CTCTTC	1 cut(s)	903
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	110, 823, 1032, 1047
BstDSI	CCRYGG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	613, 779
BstKTI	GATC	2 cut(s)	204, 948
BstMAI	GTCTC	4 cut(s)	297, 870, 983, 1050
BstMBI	GATC	2 cut(s)	201, 945
BstMWI	GCNNNNNNNGC	8 cut(s)	140, 182, 278, 320, 551, 791, 824, 1107
BstNSI	RCATGY	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	690, 1059
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
BsuRI	GGCC	2 cut(s)	164, 297
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	525, 638, 1101
Cac8I	GCNNGC	1 cut(s)	556
CfoI	GCGC	2 cut(s)	613, 779
Cfr13I	GGNCC	1 cut(s)	833
Csp6I	GTAC	2 cut(s)	720, 961
CviAII	CATG	6 cut(s)	139, 152, 568, 673, 813, 937
CviQI	GTAC	2 cut(s)	720, 961
DdeI	CTNAG	4 cut(s)	110, 823, 1032, 1047
DpnI	GATC	2 cut(s)	203, 947
DpnII	GATC	2 cut(s)	201, 945
DraI	TTTAAA	1 cut(s)	1137
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Ecl136II	GAGCTC	2 cut(s)	893, 1036
Eco130I	CCWWGG	1 cut(s)	829
Eco24I	GRGCYC	3 cut(s)	556, 895, 1038
Eco31I	GGTCTC	1 cut(s)	1050
Eco47I	GGWCC	1 cut(s)	833
Eco53kI	GAGCTC	2 cut(s)	893, 1036
EcoICRI	GAGCTC	2 cut(s)	893, 1036
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	829
EcoT38I	GRGCYC	3 cut(s)	556, 895, 1038
ErhI	CCWWGG	1 cut(s)	829
Esp3I	CGTCTC	1 cut(s)	983
FaeI	CATG	6 cut(s)	142, 155, 571, 676, 816, 940
FalI	AAGNNNNNCTT	4 cut(s)	709, 741, 988, 1020
FatI	CATG	6 cut(s)	138, 151, 567, 672, 812, 936
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	3 cut(s)	556, 895, 1038
Fsp4HI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
FspBI	CTAG	4 cut(s)	44, 465, 755, 782
GlaI	GCGC	2 cut(s)	612, 778
GluI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
HaeIII	GGCC	2 cut(s)	164, 297
HapII	CCGG	1 cut(s)	1010
HhaI	GCGC	2 cut(s)	613, 779
Hin1II	CATG	6 cut(s)	142, 155, 571, 676, 816, 940
Hin6I	GCGC	2 cut(s)	611, 777
HinP1I	GCGC	2 cut(s)	611, 777
HincII	GTYRAC	2 cut(s)	1053, 1094
HindII	GTYRAC	2 cut(s)	1053, 1094
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	3 cut(s)	106, 394, 745
HpaII	CCGG	1 cut(s)	1010
HphI	GGTGA	5 cut(s)	70, 445, 506, 917, 1071
Hpy166II	GTNNAC	3 cut(s)	980, 1053, 1094
Hpy188I	TCNGA	3 cut(s)	111, 302, 399
Hpy188III	TCNNGA	1 cut(s)	888
Hpy8I	GTNNAC	3 cut(s)	980, 1053, 1094
HpyAV	CCTTC	2 cut(s)	692, 979
HpyCH4III	ACNGT	4 cut(s)	506, 529, 694, 1091
HpyCH4V	TGCA	8 cut(s)	67, 134, 669, 751, 794, 1001, 1061, 1101
HpyF10VI	GCNNNNNNNGC	8 cut(s)	140, 182, 278, 320, 551, 791, 824, 1107
HpyF3I	CTNAG	4 cut(s)	110, 823, 1032, 1047
Hsp92II	CATG	6 cut(s)	142, 155, 571, 676, 816, 940
HspAI	GCGC	2 cut(s)	611, 777
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	2 cut(s)	201, 945
LmnI	GCTCC	2 cut(s)	452, 890
Lsp1109I	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
LweI	GCATC	2 cut(s)	678, 1010
MaeI	CTAG	4 cut(s)	44, 465, 755, 782
MaeIII	GTNAC	2 cut(s)	457, 757
MalI	GATC	2 cut(s)	203, 947
MboI	GATC	2 cut(s)	201, 945
MboII	GAAGA	5 cut(s)	31, 427, 920, 1139, 1188
MhlI	GDGCHC	3 cut(s)	556, 895, 1038
MluCI	AATT	3 cut(s)	22, 342, 620
MnlI	CCTC	6 cut(s)	109, 308, 374, 846, 855, 1151
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	5 cut(s)	341, 420, 618, 662, 1136
MslI	CAYNNNNRTG	3 cut(s)	566, 875, 941
MspA1I	CMGCKG	2 cut(s)	791, 1058
MspI	CCGG	1 cut(s)	1010
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	8 cut(s)	140, 182, 278, 320, 551, 791, 824, 1107
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	2 cut(s)	201, 945
NlaIII	CATG	6 cut(s)	142, 155, 571, 676, 816, 940
NlaIV	GGNNCC	2 cut(s)	454, 925
NspI	RCATGY	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	106, 394, 745
PkrI	GCNGC	9 cut(s)	42, 163, 274, 325, 560, 584, 679, 793, 1060
PpuMI	RGGWCCY	1 cut(s)	833
Psp124BI	GAGCTC	2 cut(s)	895, 1038
Psp5II	RGGWCCY	1 cut(s)	833
PspN4I	GGNNCC	2 cut(s)	454, 925
PspPI	GGNCC	1 cut(s)	833
PspPPI	RGGWCCY	1 cut(s)	833
PstI	CTGCAG	1 cut(s)	1063
PvuII	CAGCTG	2 cut(s)	791, 1058
RsaI	GTAC	2 cut(s)	721, 962
RsaNI	GTAC	2 cut(s)	720, 961
RseI	CAYNNNNRTG	3 cut(s)	566, 875, 941
SacI	GAGCTC	2 cut(s)	895, 1038
SaqAI	TTAA	5 cut(s)	341, 420, 618, 662, 1136
SatI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
Sau3AI	GATC	2 cut(s)	201, 945
Sau96I	GGNCC	1 cut(s)	833
SduI	GDGCHC	3 cut(s)	556, 895, 1038
SfaNI	GCATC	2 cut(s)	678, 1010
SfcI	CTRYAG	2 cut(s)	690, 1059
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	3 cut(s)	566, 875, 941
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	3 cut(s)	22, 342, 620
SsiI	CCGC	2 cut(s)	161, 558
SspI	AATATT	2 cut(s)	633, 647
SspMI	CTAG	4 cut(s)	44, 465, 755, 782
SstI	GAGCTC	2 cut(s)	895, 1038
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	4 cut(s)	506, 529, 694, 1091
TaqI	TCGA	1 cut(s)	98
TasI	AATT	3 cut(s)	22, 342, 620
TatI	WGTACW	2 cut(s)	719, 960
TauI	GCSGC	2 cut(s)	164, 561
TfiI	GAWTC	3 cut(s)	106, 394, 745
Tru1I	TTAA	5 cut(s)	341, 420, 618, 662, 1136
Tru9I	TTAA	5 cut(s)	341, 420, 618, 662, 1136
TscAI	CASTG	3 cut(s)	532, 645, 1108
TseI	GCWGC	7 cut(s)	40, 272, 323, 582, 677, 791, 1058
TspDTI	ATGAA	5 cut(s)	101, 115, 488, 595, 801
TspGWI	ACGGA	1 cut(s)	997
TspRI	CASTG	3 cut(s)	532, 645, 1108
VpaK11BI	GGWCC	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	473
XceI	RCATGY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	4 cut(s)	44, 465, 755, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.