Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006419

Physical Location & Seq

Genomic Coordinates Reverse (-)

66095506 .. 66098563

Gene Structure 3058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG454800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCAAAGCGAATTTCATTTATGTCGCATAGCTTCCAATTGGGTTTGGCATAATTTTTTAGAGGTACGGTCTCCAATGTTGCATGAAAATGAATGCAGGATAACAGCAGCAATGGCATTGTTTTACTATGGCCTCCGAGACACCACGGCTACATATGCTGCCAACTTCCTCAACTTAATTCCCATAGCCACCTTTCTCCTCTCCACCATCACAGGAATAGAGAAACTGAATCTGAAAACAAGAGCAGGGAAGATTAAGTGTCTGGGGGTGATAGTATGTGTTGGGGGAGCCGTAACTACTAGCCTTTACAAGGGAGAAGCATTTTATTTGGTTTATCACAGTAATAATCACCATCACATCACTGTTGATACATCTTATGTTCATTGGGCTCGCGGCACTATCATGCTCTTTTGTAGCTGCTTCTCCTATTCTACGTGGTTCATAGCGCAAGTTAAATTGCTCAAAATATTTCCACTGAAATATTGGGCAACAATGTTAATGTGCATCATGGCAGCCCTTCAATCTACAGTCATAGGCTTATGTTTAGACACAAGTACAGCTTCGTGGAGAATAGGGTGGAATCTGCAACTAGTTACTATACTTTATTCGGGAGCACTAGCAACAGCTGCAACATTCTGCTTACTTTCATGGGCAATCTCAGCCCAAGGACCTCTCTATCCTCCTATGTTCAATCCATTGTCTCTCATTTTTGTGGCAATATCAGGAGCTCTCATACTCGGTGAAGAGATTAGAATGGGAACCTTGTTGGGCATGGTTATGATCATACTTGGGTTGTACTCGTTTTTGTGGGGTAAACGGAAGGAGACGAAAAGTGCATCTTTGCCGGAACAAGCAAAAACAAATGCTGAGCTCACAGGGTCTCAGTTGACAGCTGCAGTTGTGCCGACTACTTCACCAGATAACTGTCAACTCTGCAATGATAGCATTTCTGTTGATGTTGAAGATGGTTTAAAAACCACAGAAAATCCAAGAGGGCTTGATAATAAGCGAAGAACTATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

341

Amino Acids

37.82

Weight (kDa)

8.59

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	131 - 267	9.2e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100
malus_domestica	MD01G1230200.v1.1
prunus_persica	Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383151
rosa_laevigata	RLG00000026126
rosa_multiflora	Rmu_sc0008563.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277540
rosa_rugosa	Rorug01G0439200 Rorug01G0439200 Rorug01G0439200 Rorug01G0439200
rosa_samantha	Rh1AG464800 Rh1BG422100 Rh1CG435400 Rh1DG454800
rosa_wichuraiana	Rw1G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	3 cut(s)	66, 556, 797
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	521, 691, 962
AhlI	ACTAGT	1 cut(s)	589
AluBI	AGCT	7 cut(s)	32, 417, 560, 626, 728, 871, 893
AluI	AGCT	7 cut(s)	32, 417, 560, 626, 728, 871, 893
Alw21I	GWGCWC	3 cut(s)	616, 730, 873
Alw26I	GTCTC	5 cut(s)	75, 132, 705, 818, 885
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	6 cut(s)	107, 158, 417, 512, 626, 893
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	4 cut(s)	280, 341, 752, 906
AvaII	GGWCC	1 cut(s)	668
BanII	GRGCYC	3 cut(s)	391, 730, 873
Bbv12I	GWGCWC	3 cut(s)	616, 730, 873
BbvI	GCAGC	6 cut(s)	119, 145, 404, 524, 613, 880
BccI	CCATC	3 cut(s)	215, 360, 959
BceAI	ACGGC	2 cut(s)	162, 275
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	5 cut(s)	75, 132, 705, 818, 885
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	3 cut(s)	300, 590, 617
BfmI	CTRYAG	2 cut(s)	525, 894
BisI	GCNGC	7 cut(s)	108, 159, 394, 418, 513, 627, 894
BlpI	GCTNAGC	1 cut(s)	867
BlsI	GCNGC	7 cut(s)	109, 160, 395, 419, 514, 628, 895
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	289, 760
BmsI	GCATC	2 cut(s)	513, 845
Bpu1102I	GCTNAGC	1 cut(s)	867
BsaAI	YACGTR	1 cut(s)	435
BsaI	GGTCTC	2 cut(s)	75, 885
BsaJI	CCNNGG	2 cut(s)	144, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse3DI	GCAATG	2 cut(s)	117, 943
BseDI	CCNNGG	2 cut(s)	144, 664
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	2 cut(s)	117, 943
BseMII	CTCAG	3 cut(s)	672, 858, 896
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	6 cut(s)	119, 145, 404, 524, 613, 880
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	3 cut(s)	616, 730, 873
BsiSI	CCGG	1 cut(s)	845
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	5 cut(s)	75, 132, 705, 818, 885
BsmBI	CGTCTC	1 cut(s)	818
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	2 cut(s)	75, 885
Bsp1286I	GDGCHC	4 cut(s)	391, 616, 730, 873
Bsp143I	GATC	1 cut(s)	780
Bsp1720I	GCTNAGC	1 cut(s)	867
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	671, 859, 895
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	289, 760
BspMAI	CTGCAG	1 cut(s)	898
BspTNI	GGTCTC	2 cut(s)	75, 885
BsrDI	GCAATG	2 cut(s)	117, 943
BssECI	CCNNGG	2 cut(s)	144, 664
BssMI	GATC	1 cut(s)	780
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	5 cut(s)	69, 341, 364, 529, 926
Bst6I	CTCTTC	1 cut(s)	738
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	3 cut(s)	658, 867, 882
BstDSI	CCRYGG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	783
BstMAI	GTCTC	5 cut(s)	75, 132, 705, 818, 885
BstMBI	GATC	1 cut(s)	780
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 155, 626, 659, 942
BstSFI	CTRYAG	2 cut(s)	525, 894
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	6 cut(s)	119, 145, 404, 524, 613, 880
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	360, 473
Cac8I	GCNNGC	1 cut(s)	391
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	668
Csp6I	GTAC	3 cut(s)	65, 555, 796
CviAII	CATG	5 cut(s)	83, 403, 508, 648, 772
CviQI	GTAC	3 cut(s)	65, 555, 796
DdeI	CTNAG	3 cut(s)	658, 867, 882
DpnI	GATC	1 cut(s)	782
DpnII	GATC	1 cut(s)	780
DraI	TTTAAA	1 cut(s)	972
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Ecl136II	GAGCTC	2 cut(s)	728, 871
Eco130I	CCWWGG	1 cut(s)	664
Eco24I	GRGCYC	3 cut(s)	391, 730, 873
Eco31I	GGTCTC	2 cut(s)	75, 885
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	2 cut(s)	728, 871
EcoICRI	GAGCTC	2 cut(s)	728, 871
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	3 cut(s)	391, 730, 873
ErhI	CCWWGG	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	818
FaeI	CATG	5 cut(s)	86, 406, 511, 651, 775
FalI	AAGNNNNNCTT	4 cut(s)	544, 576, 823, 855
FatI	CATG	5 cut(s)	82, 402, 507, 647, 771
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	7 cut(s)	108, 159, 394, 418, 513, 627, 894
FriOI	GRGCYC	3 cut(s)	391, 730, 873
Fsp4HI	GCNGC	7 cut(s)	108, 159, 394, 418, 513, 627, 894
FspBI	CTAG	3 cut(s)	300, 590, 617
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	7 cut(s)	108, 159, 394, 418, 513, 627, 894
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	845
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	5 cut(s)	86, 406, 511, 651, 775
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	2 cut(s)	888, 929
HindII	GTYRAC	2 cut(s)	888, 929
HinfI	GANTC	2 cut(s)	229, 580
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	4 cut(s)	280, 341, 752, 906
Hpy166II	GTNNAC	3 cut(s)	815, 888, 929
Hpy188I	TCNGA	2 cut(s)	137, 234
Hpy188III	TCNNGA	2 cut(s)	609, 723
Hpy8I	GTNNAC	3 cut(s)	815, 888, 929
HpyAV	CCTTC	2 cut(s)	527, 814
HpyCH4III	ACNGT	5 cut(s)	69, 341, 364, 529, 926
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	9 cut(s)	4, 82, 96, 504, 586, 629, 836, 896, 936
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 155, 626, 659, 942
HpyF3I	CTNAG	3 cut(s)	658, 867, 882
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	5 cut(s)	86, 406, 511, 651, 775
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	1 cut(s)	780
LmnI	GCTCC	3 cut(s)	287, 611, 725
LpnPI	CCDG	8 cut(s)	82, 198, 231, 248, 708, 858, 861, 930
Lsp1109I	GCAGC	6 cut(s)	119, 145, 404, 524, 613, 880
LweI	GCATC	2 cut(s)	513, 845
MaeI	CTAG	3 cut(s)	300, 590, 617
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	292, 592
MalI	GATC	1 cut(s)	782
MboI	GATC	1 cut(s)	780
MboII	GAAGA	4 cut(s)	262, 755, 974, 1023
MfeI	CAATTG	1 cut(s)	37
MhlI	GDGCHC	4 cut(s)	391, 616, 730, 873
MluCI	AATT	5 cut(s)	11, 37, 52, 177, 455
MnlI	CCTC	7 cut(s)	55, 143, 179, 209, 681, 690, 986
MseI	TTAA	5 cut(s)	176, 255, 453, 497, 971
MslI	CAYNNNNRTG	4 cut(s)	87, 401, 710, 776
MspA1I	CMGCKG	2 cut(s)	626, 893
MspI	CCGG	1 cut(s)	845
MunI	CAATTG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	98
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	5 cut(s)	113, 155, 626, 659, 942
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	780
NlaIII	CATG	5 cut(s)	86, 406, 511, 651, 775
NlaIV	GGNNCC	2 cut(s)	289, 760
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	229, 580
PkrI	GCNGC	7 cut(s)	109, 160, 395, 419, 514, 628, 895
Ppu21I	YACGTR	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	668
Psp124BI	GAGCTC	2 cut(s)	730, 873
Psp5II	RGGWCCY	1 cut(s)	668
PspN4I	GGNNCC	2 cut(s)	289, 760
PspPI	GGNCC	1 cut(s)	668
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	898
PvuII	CAGCTG	2 cut(s)	626, 893
RsaI	GTAC	3 cut(s)	66, 556, 797
RsaNI	GTAC	3 cut(s)	65, 555, 796
RseI	CAYNNNNRTG	4 cut(s)	87, 401, 710, 776
SacI	GAGCTC	2 cut(s)	730, 873
SaqAI	TTAA	5 cut(s)	176, 255, 453, 497, 971
SatI	GCNGC	7 cut(s)	108, 159, 394, 418, 513, 627, 894
Sau3AI	GATC	1 cut(s)	780
Sau96I	GGNCC	1 cut(s)	668
SduI	GDGCHC	4 cut(s)	391, 616, 730, 873
SfaNI	GCATC	2 cut(s)	513, 845
SfcI	CTRYAG	2 cut(s)	525, 894
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	4 cut(s)	87, 401, 710, 776
SpeI	ACTAGT	1 cut(s)	589
Sse9I	AATT	5 cut(s)	11, 37, 52, 177, 455
SsiI	CCGC	1 cut(s)	393
SspI	AATATT	2 cut(s)	468, 482
SspMI	CTAG	3 cut(s)	300, 590, 617
SstI	GAGCTC	2 cut(s)	730, 873
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	5 cut(s)	69, 341, 364, 529, 926
TaiI	ACGT	1 cut(s)	437
TasI	AATT	5 cut(s)	11, 37, 52, 177, 455
TatI	WGTACW	2 cut(s)	554, 795
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	229, 580
Tru1I	TTAA	5 cut(s)	176, 255, 453, 497, 971
Tru9I	TTAA	5 cut(s)	176, 255, 453, 497, 971
TscAI	CASTG	2 cut(s)	367, 480
TseI	GCWGC	6 cut(s)	107, 158, 417, 512, 626, 893
TspDTI	ATGAA	6 cut(s)	5, 99, 105, 371, 430, 636
TspGWI	ACGGA	1 cut(s)	832
TspRI	CASTG	2 cut(s)	367, 480
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XspI	CTAG	3 cut(s)	300, 590, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.