Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017085

Physical Location & Seq

Genomic Coordinates Forward (+)

24073575 .. 24074586

Gene Structure 1012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGTACCAAAAGAAAGCAATCGGCAGCGCCGAAGCTGGACGACGAGCAGATCACGGAGCTGCGGGAGATATTCCGATCATTTGACGGAGACAACGACGGAAGTTTGACCCCTCTGGAGCTGAGGTCCCTGCTCCGGTCGCTAGGGTTGGAAGCGAGCCATGAGCAGGTGGAGGCTCTGATGCAAAAGGCTGATCGTAACGACAACGGACTGGTGGAGTTCTCCGAGTTCGTGGTGCTGGTGGAGCCTGACCTACTACAGCTACAAGGTGGCAAGTGTCCTTACAGCGAGGAGATGCTGAAGAGCATGTTTGACATGTTCGATAGGGATGGTAATGGCTACATCAGCGCGGCGGAGCTGGCCCATTCCATGGCGAAGCTCGGTCACGCGCTCACGGCGGAGGAGCTGATTGGGATGATGGAGGAGGCTGATACCGATGGAGATGGCCAGATCGATTTTCAGGAGTTCGTGAGAGCCATCACATCGGCTGCGTTCCATAATCGCTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0032879 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050789 GO:0051049 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

171

Amino Acids

19.02

Weight (kDa)

4.46

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	19 - 78	2.8e-15	EF-hand domain pair
EF-hand_1	PF00036	20 - 48	2.6e-06	EF hand domain
EF-hand_6	PF13405	20 - 49	6.6e-08	EF-hand domain
EF-hand_7	PF13499	97 - 160	1.6e-16	EF-hand domain pair
EF-hand_1	PF00036	100 - 127	1.4e-07	EF hand domain
EF-hand_6	PF13405	100 - 128	2.7e-07	EF-hand domain
EF-hand_8	PF13833	113 - 158	3.8e-09	EF-hand domain pair
EF-hand_1	PF00036	136 - 162	2.5e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03000
fragaria_vesca	FvH4_7g34050
malus_domestica	MD01G1013200.v1.1
pyrus_communis	pycom01g04530
rosa_chinensis	RchiOBHm_Chr1g0384321
rosa_laevigata	RLG00000026049
rosa_multiflora	Rmu_co8218092.1_g000001 Rmu_sc0016737.1_g000003 Rmu_sc0018832.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276780
rosa_samantha	Rh1BG430000 Rh1DG462600
rosa_wichuraiana	Rw1G040040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	157
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	2 cut(s)	350, 389
AciI	CCGC	4 cut(s)	64, 350, 353, 398
AcoI	YGGCCR	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	135, 166, 370
AflIII	ACRYGT	1 cut(s)	315
AluBI	AGCT	7 cut(s)	37, 61, 121, 262, 358, 379, 406
AluI	AGCT	7 cut(s)	37, 61, 121, 262, 358, 379, 406
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	360, 445
ApeKI	GCWGC	3 cut(s)	26, 61, 488
AspLEI	GCGC	3 cut(s)	31, 350, 391
AspS9I	GGNCC	2 cut(s)	126, 361
AvaII	GGWCC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	38, 48, 475
BccI	CCATC	5 cut(s)	323, 412, 431, 437, 485
BceAI	ACGGC	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	27, 62, 351, 489
BlsI	GCNGC	4 cut(s)	28, 63, 352, 490
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	126, 361
BmiI	GGNNCC	2 cut(s)	128, 246
BmsI	GCATC	2 cut(s)	171, 285
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 166, 370
Bse1I	ACTGG	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	334, 420
BseLI	CCNNNNNNNGG	3 cut(s)	135, 166, 370
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	3 cut(s)	305, 416, 437
BseXI	GCAGC	3 cut(s)	38, 48, 475
Bsh1236I	CGCG	2 cut(s)	350, 389
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	362, 447
BshVI	ATCGAT	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	135, 166, 370
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	362, 447
Bsp143I	GATC	4 cut(s)	51, 77, 193, 450
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	4 cut(s)	64, 350, 353, 398
BspANI	GGCC	2 cut(s)	362, 447
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	2 cut(s)	350, 389
BspLI	GGNNCC	2 cut(s)	128, 246
BspMI	ACCTGC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	51, 77, 193, 450
BssT1I	CCWWGG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	157, 360
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	334, 420
BstFNI	CGCG	2 cut(s)	350, 389
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	3 cut(s)	31, 350, 391
BstKTI	GATC	4 cut(s)	54, 80, 196, 453
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	51, 77, 193, 450
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 244, 345, 359, 395
BstNSI	RCATGY	2 cut(s)	310, 319
BstSFI	CTRYAG	1 cut(s)	257
BstUI	CGCG	2 cut(s)	350, 389
BstV1I	GCAGC	3 cut(s)	38, 48, 475
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	362, 447
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	334, 420
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	157, 360
CfoI	GCGC	3 cut(s)	31, 350, 391
Cfr13I	GGNCC	2 cut(s)	126, 361
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	5 cut(s)	161, 307, 316, 370, 510
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	4 cut(s)	53, 79, 195, 452
DpnII	GATC	4 cut(s)	51, 77, 193, 450
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
EciI	GGCGGA	2 cut(s)	368, 413
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	5 cut(s)	164, 310, 319, 373, 513
FaiI	YATR	6 cut(s)	162, 308, 317, 371, 498, 511
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	5 cut(s)	160, 306, 315, 369, 509
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	27, 62, 351, 489
FokI	GGATG	2 cut(s)	341, 427
Fsp4HI	GCNGC	4 cut(s)	27, 62, 351, 489
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	3 cut(s)	30, 349, 390
GluI	GCNGC	4 cut(s)	27, 62, 351, 489
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	362, 447
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	3 cut(s)	31, 350, 391
Hin1II	CATG	5 cut(s)	164, 310, 319, 373, 513
Hin6I	GCGC	3 cut(s)	29, 348, 389
HinP1I	GCGC	3 cut(s)	29, 348, 389
HpaII	CCGG	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	77, 180, 226
Hpy188III	TCNNGA	3 cut(s)	116, 461, 469
Hpy99I	CGWCG	2 cut(s)	47, 101
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 244, 345, 359, 395
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	5 cut(s)	164, 310, 319, 373, 513
HspAI	GCGC	3 cut(s)	29, 348, 389
Kzo9I	GATC	4 cut(s)	51, 77, 193, 450
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	6 cut(s)	58, 118, 138, 244, 355, 403
Lsp1109I	GCAGC	3 cut(s)	38, 48, 475
LweI	GCATC	2 cut(s)	171, 285
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	197, 383
MalI	GATC	4 cut(s)	53, 79, 195, 452
MboI	GATC	4 cut(s)	51, 77, 193, 450
MboII	GAAGA	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	447
MluNI	TGGCCA	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	117, 123, 166, 283, 394, 415, 418
Mox20I	TGGCCA	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	447
MspI	CCGG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	350, 389
MwoI	GCNNNNNNNGC	5 cut(s)	139, 244, 345, 359, 395
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	51, 77, 193, 450
NlaIII	CATG	5 cut(s)	164, 310, 319, 373, 513
NlaIV	GGNNCC	2 cut(s)	128, 246
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	2 cut(s)	310, 319
PaqCI	CACCTGC	1 cut(s)	157
PciI	ACATGT	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 93
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	28, 63, 352, 490
PpuMI	RGGWCCY	1 cut(s)	126
PscI	ACATGT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	128, 246
PspPI	GGNCC	2 cut(s)	126, 361
PspPPI	RGGWCCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	296
SatI	GCNGC	4 cut(s)	27, 62, 351, 489
Sau3AI	GATC	4 cut(s)	51, 77, 193, 450
Sau96I	GGNCC	2 cut(s)	126, 361
SfaNI	GCATC	2 cut(s)	171, 285
SfcI	CTRYAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	126
SsiI	CCGC	4 cut(s)	64, 350, 353, 398
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	2 cut(s)	321, 453
TaqII	GACCGA	1 cut(s)	371
TauI	GCSGC	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	26, 61, 488
Tsp45I	GTSAC	1 cut(s)	383
TspGWI	ACGGA	4 cut(s)	71, 102, 114, 222
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	126
XceI	RCATGY	2 cut(s)	310, 319
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.