FvH4_7g34150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013154
Physical Location & Seq
Reverse (-)
24118884 .. 24120255
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34150.t1

Sequence Viewer

Length: 369 bp
ATGAACCAACAAAGCAAAGGCCCAATGGTCAAGTTAAAAGAGATTCTGTCTGGTGTGGTGTCTGCTGGAAACTACTGGTTTCGATTAGGTATGGAAATGGAGAAGACGGGTGAGGGCGAGAATAAGAACAAGGAAAAGATATGCAAGAGATGCCAACAAAGCTACAGTCCATCCGCCAACAACACTTCCTCATGCCGCTTCCATCCTTCTTTCTTCGTCTGTCGCCGTCATGACGACCAGAAAAGGTACTATGAATTGGGACCTGACGATCCACCATATGCTGCCAAGTTCTATGATTGCTGTGGAGCTGAGGATCCTGAGGCTACTGGTTGCACCACCAGTTTCCATGTTTCTTATGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.89

Weight (kDa)

5.91

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65000
fragaria_vesca FvH4_7g34150
malus_domestica MD01G1238100.v1.1 MD01G1238400.v1.1 MD06G1024400.v1.1
prunus_persica Prupe.2G328300_v2.0.a1
pyrus_communis pycom01g24560 pycom01g24600
rosa_chinensis RchiOBHm_Chr1g0384511 RchiOBHm_Chr2g0135851
rosa_multiflora Rmu_sc0007848.1_g000009
rosa_roxburghii Rroxscaffold_4G00276640
rosa_samantha Rh1AG473600 Rh1BG431700 Rh1CG444800 Rh1DG464200 Rh2BG384500
rosa_wichuraiana Rw1G039900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 174, 196
AclWI GGATC 3 cut(s) 263, 308, 321
AfaI GTAC 1 cut(s) 248
AluBI AGCT 2 cut(s) 162, 308
AluI AGCT 2 cut(s) 162, 308
AlwI GGATC 3 cut(s) 263, 308, 321
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AspS9I GGNCC 2 cut(s) 20, 260
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 318
BamHI GGATCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 178, 210
BceAI ACGGC 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 196, 282
BlsI GCNGC 2 cut(s) 197, 283
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 20, 260
BmiI GGNNCC 2 cut(s) 261, 315
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 309
Bse1I ACTGG 3 cut(s) 80, 331, 339
Bse21I CCTNAGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 170, 202
BseMII CTCAG 2 cut(s) 300, 309
BseNI ACTGG 3 cut(s) 80, 331, 339
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 21
BslFI GGGAC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 268, 313
BspACI CCGC 2 cut(s) 174, 196
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 301, 310
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 261, 315
BspPI GGATC 3 cut(s) 263, 308, 321
BsrI ACTGG 3 cut(s) 80, 331, 339
BssMI GATC 2 cut(s) 268, 313
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 309, 318
BstF5I GGATG 2 cut(s) 170, 202
BstKTI GATC 2 cut(s) 271, 316
BstMBI GATC 2 cut(s) 268, 313
BstMWI GCNNNNNNNGC 2 cut(s) 150, 159
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 170, 202
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 20, 260
Csp6I GTAC 1 cut(s) 247
CviAII CATG 3 cut(s) 192, 230, 347
CviJI RGCY 4 cut(s) 21, 162, 308, 323
CviKI_1 RGCY 4 cut(s) 21, 162, 308, 323
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 309, 318
DpnI GATC 2 cut(s) 270, 315
DpnII GATC 2 cut(s) 268, 313
EciI GGCGGA 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 260
Eco81I CCTNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 260
FaeI CATG 3 cut(s) 195, 233, 350
FaqI GGGAC 1 cut(s) 273
FatI CATG 3 cut(s) 191, 229, 346
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 196, 282
FokI GGATG 2 cut(s) 157, 189
Fsp4HI GCNGC 2 cut(s) 196, 282
GluI GCNGC 2 cut(s) 196, 282
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 3 cut(s) 195, 233, 350
HinfI GANTC 1 cut(s) 43
HphI GGTGA 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 230, 317
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 144, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 159
HpyF3I CTNAG 2 cut(s) 309, 318
Hsp92II CATG 3 cut(s) 195, 233, 350
Kzo9I GATC 2 cut(s) 268, 313
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 8 cut(s) 36, 51, 61, 251, 276, 312, 330, 352
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 270, 315
MboI GATC 2 cut(s) 268, 313
MboII GAAGA 2 cut(s) 115, 205
MflI RGATCY 1 cut(s) 313
MluCI AATT 1 cut(s) 254
MnlI CCTC 4 cut(s) 106, 199, 304, 313
MseI TTAA 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 150, 159
NdeI CATATG 1 cut(s) 277
NdeII GATC 2 cut(s) 268, 313
NlaIII CATG 3 cut(s) 195, 233, 350
NlaIV GGNNCC 2 cut(s) 261, 315
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 197, 283
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 261, 315
PspPI GGNCC 2 cut(s) 20, 260
PspPPI RGGWCCY 1 cut(s) 260
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 2 cut(s) 196, 282
Sau3AI GATC 2 cut(s) 268, 313
Sau96I GGNCC 2 cut(s) 20, 260
SetI ASST 5 cut(s) 91, 164, 248, 265, 310
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 260
Sse9I AATT 1 cut(s) 254
SsiI CCGC 2 cut(s) 174, 196
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 254
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 17, 267
VpaK11BI GGWCC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.