pycom01g24600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013154
Physical Location & Seq
Reverse (-)
21454072 .. 21454882
811 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24600.1

Sequence Viewer

Length: 279 bp
ATGGAGAAAAAGAGTGGGAGTGAGGAGCATAAGGGAAGGGTACGCAAAAGGTGCAACGACAGCTACAGGGCCTCCTTTAACACCTCTTTCTCATGCCGCTTCCACCCTTCTTTCTTCGTCTGTCGCCGTCACGACGACCAGAAGAGGTACTATGAATTGGGATCCAACGATCCGCCATGCGCTGCCAAGTTCTACGACTGTTGCGGGGCTGAGGATCCTGAGGCATCTGGCTGCACTACCAGTTTCCATGTTTCGTATGATGACGATCGATCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.61

Weight (kDa)

6.87

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65000
fragaria_vesca FvH4_7g34150
malus_domestica MD01G1238100.v1.1 MD01G1238400.v1.1 MD06G1024400.v1.1
prunus_persica Prupe.2G328300_v2.0.a1
pyrus_communis pycom01g24560 pycom01g24600
rosa_chinensis RchiOBHm_Chr1g0384511 RchiOBHm_Chr2g0135851
rosa_multiflora Rmu_sc0007848.1_g000009
rosa_roxburghii Rroxscaffold_4G00276640
rosa_samantha Rh1AG473600 Rh1BG431700 Rh1CG444800 Rh1DG464200 Rh2BG384500
rosa_wichuraiana Rw1G039900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 97, 173, 204
AclWI GGATC 6 cut(s) 156, 164, 169, 209, 222, 264
AfaI GTAC 2 cut(s) 42, 149
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AlwI GGATC 6 cut(s) 156, 164, 169, 209, 222, 264
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 182, 231
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 219
BamHI GGATCC 2 cut(s) 161, 214
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 169, 218
BceAI ACGGC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 3 cut(s) 97, 183, 232
BlsI GCNGC 3 cut(s) 98, 184, 233
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 163, 216
BmsI GCATC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 264
BseMII CTCAG 2 cut(s) 201, 210
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 169, 218
BsgI GTGCAG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 268
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 5 cut(s) 161, 169, 214, 265, 269
BspACI CCGC 3 cut(s) 97, 173, 204
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 202, 211
BspDI ATCGAT 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 163, 216
BspPI GGATC 6 cut(s) 156, 164, 169, 209, 222, 264
BsrI ACTGG 1 cut(s) 240
BssMI GATC 5 cut(s) 161, 169, 214, 265, 269
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 210, 219
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 5 cut(s) 164, 172, 217, 268, 272
BstMBI GATC 5 cut(s) 161, 169, 214, 265, 269
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 51, 60
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 169, 218
BstX2I RGATCY 2 cut(s) 161, 214
BstYI RGATCY 2 cut(s) 161, 214
Bsu15I ATCGAT 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 268
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 268
Csp6I GTAC 2 cut(s) 41, 148
CviAII CATG 3 cut(s) 93, 177, 248
CviJI RGCY 4 cut(s) 63, 71, 209, 231
CviKI_1 RGCY 4 cut(s) 63, 71, 209, 231
CviQI GTAC 2 cut(s) 41, 148
DdeI CTNAG 2 cut(s) 210, 219
DpnI GATC 5 cut(s) 163, 171, 216, 267, 271
DpnII GATC 5 cut(s) 161, 169, 214, 265, 269
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 69
FaeI CATG 3 cut(s) 96, 180, 251
FaiI YATR 6 cut(s) 30, 94, 153, 178, 249, 258
FatI CATG 3 cut(s) 92, 176, 247
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 3 cut(s) 97, 183, 232
Fsp4HI GCNGC 3 cut(s) 97, 183, 232
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 97, 183, 232
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 1 cut(s) 182
Hin1II CATG 3 cut(s) 96, 180, 251
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 131, 218
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 30, 117
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 54, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 60
HpyF3I CTNAG 2 cut(s) 210, 219
Hsp92II CATG 3 cut(s) 96, 180, 251
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 5 cut(s) 161, 169, 214, 265, 269
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 52, 152, 213, 231, 253
Lsp1109I GCAGC 2 cut(s) 169, 218
LweI GCATC 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 128
MalI GATC 5 cut(s) 163, 171, 216, 267, 271
MboI GATC 5 cut(s) 161, 169, 214, 265, 269
MboII GAAGA 2 cut(s) 106, 154
MflI RGATCY 2 cut(s) 161, 214
MluCI AATT 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 6 cut(s) 16, 82, 94, 138, 205, 214
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 51, 60
NdeII GATC 5 cut(s) 161, 169, 214, 265, 269
NlaIII CATG 3 cut(s) 96, 180, 251
NlaIV GGNNCC 2 cut(s) 163, 216
NmuCI GTSAC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PkrI GCNGC 3 cut(s) 98, 184, 233
Ple19I CGATCG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 163, 216
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 2 cut(s) 161, 214
PvuI CGATCG 1 cut(s) 268
RsaI GTAC 2 cut(s) 42, 149
RsaNI GTAC 2 cut(s) 41, 148
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 3 cut(s) 97, 183, 232
Sau3AI GATC 5 cut(s) 161, 169, 214, 265, 269
Sau96I GGNCC 1 cut(s) 69
SetI ASST 4 cut(s) 53, 65, 86, 149
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 97, 173, 204
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 155
TauI GCSGC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 182, 231
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.