Rroxscaffold_4G00276640

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
183790 .. 186214
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276640.1

Sequence Viewer

Length: 360 bp
ATGAATGACCGACTTCCACAGCCGCATTGGTTGAAAGAGATATCTGAGAAGCTATTCTTCATGTTGATTATGTCTCTAATGACAGGGATGGAAATGGAGAAGGCGAGAAAGAGTGAGGAGGGCGAAAAGATATGCAAGAGATGCAAACAAAGTTACAGTCCATCCTCCAACACCACATCCTCATGCCGCTTCCATCCTTCTTTCTTCGTCTGTCGCCGTCATGACGACCAGAAAAGGTACTATGAATTGGGACCTGAAGATCCGCCATATGCGGCCAAGTTCTATGATTGTTGTGGGGCTGAGGATCCTGAGGCTTCTGGTTGCACCACCAGTTTCCATGTTTCTTATGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.86

Weight (kDa)

5.56

Isoelectric Point (pI)

70.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013154)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 23, 187, 263, 272
AclWI GGATC 3 cut(s) 254, 299, 312
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 3 cut(s) 254, 299, 312
AoxI GGCC 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
Asp700I GAANNNNTTC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 309
BamHI GGATCC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 300
BccI CCATC 3 cut(s) 82, 169, 201
BceAI ACGGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 3 cut(s) 23, 187, 273
BlsI GCNGC 3 cut(s) 24, 188, 274
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 252, 306
BmsI GCATC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 330
Bse21I CCTNAGG 1 cut(s) 309
BseGI GGATG 4 cut(s) 93, 161, 176, 193
BseMII CTCAG 3 cut(s) 36, 291, 300
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 275
BslFI GGGAC 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 259, 304
BspACI CCGC 4 cut(s) 23, 187, 263, 272
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 37, 292, 301
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 252, 306
BspPI GGATC 3 cut(s) 254, 299, 312
BsrI ACTGG 1 cut(s) 330
BssMI GATC 2 cut(s) 259, 304
Bst4CI ACNGT 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 45, 300, 309
BstF5I GGATG 4 cut(s) 93, 161, 176, 193
BstKTI GATC 2 cut(s) 262, 307
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 259, 304
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 259, 304
BstYI RGATCY 2 cut(s) 259, 304
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 4 cut(s) 93, 161, 176, 193
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 238
CviAII CATG 4 cut(s) 61, 183, 221, 338
CviJI RGCY 5 cut(s) 22, 52, 275, 299, 314
CviKI_1 RGCY 5 cut(s) 22, 52, 275, 299, 314
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 45, 300, 309
DpnI GATC 2 cut(s) 261, 306
DpnII GATC 2 cut(s) 259, 304
EaeI YGGCCR 1 cut(s) 273
EciI GGCGGA 1 cut(s) 252
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 251
EcoRV GATATC 1 cut(s) 42
FaeI CATG 4 cut(s) 64, 186, 224, 341
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 264
FatI CATG 4 cut(s) 60, 182, 220, 337
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 23, 187, 273
FokI GGATG 4 cut(s) 100, 148, 163, 180
Fsp4HI GCNGC 3 cut(s) 23, 187, 273
GluI GCNGC 3 cut(s) 23, 187, 273
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 4 cut(s) 64, 186, 224, 341
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 221, 308
HpyAV CCTTC 2 cut(s) 94, 207
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 135, 144, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 3 cut(s) 45, 300, 309
Hsp92II CATG 4 cut(s) 64, 186, 224, 341
Kzo9I GATC 2 cut(s) 259, 304
LpnPI CCDG 6 cut(s) 69, 242, 267, 303, 321, 343
LweI GCATC 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 261, 306
MboI GATC 2 cut(s) 259, 304
MboII GAAGA 3 cut(s) 49, 196, 269
MflI RGATCY 2 cut(s) 259, 304
MluCI AATT 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 6 cut(s) 109, 112, 175, 190, 295, 304
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 259, 304
NlaIII CATG 4 cut(s) 64, 186, 224, 341
NlaIV GGNNCC 2 cut(s) 252, 306
PagI TCATGA 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 24, 188, 274
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 252, 306
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 2 cut(s) 259, 304
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 181
SatI GCNGC 3 cut(s) 23, 187, 273
Sau3AI GATC 2 cut(s) 259, 304
Sau96I GGNCC 1 cut(s) 251
SetI ASST 3 cut(s) 54, 239, 256
SfaNI GCATC 1 cut(s) 131
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 181
Sse9I AATT 1 cut(s) 245
SsiI CCGC 4 cut(s) 23, 187, 263, 272
TaaI ACNGT 1 cut(s) 158
TaqII GACCGA 1 cut(s) 24
TasI AATT 1 cut(s) 245
TauI GCSGC 3 cut(s) 25, 189, 275
TspDTI ATGAA 3 cut(s) 17, 49, 258
VpaK11BI GGWCC 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.