MD00G1018100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
2932066 .. 2935548
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1018100.v1.1.491

Sequence Viewer

Length: 183 bp
ATGCCGCATAGAACTCGGCCAATGACTGCGCTCTTGGTGTTTACTGGACTGAATATTGTACTAGTTTCAACCATTACTCCAGTCTATGATTTCGTCTGCTTCCTTCCCTATTGGGAAAGACGGAGAGAACGGCGTCGTCAGGAACGTGAGGCTACCATAGCAAATGGCCTTAAATCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.16

Weight (kDa)

11.14

Isoelectric Point (pI)

73.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09225
malus_domestica MD00G1018100.v1.1 MD12G1095600.v1.1
prunus_persica Prupe.7G032300_v2.0.a1
pyrus_communis pycom12g08250
rosa_chinensis RchiOBHm_Chr1g0328411 RchiOBHm_Chr1g0328511
rosa_roxburghii Rroxscaffold_4G00321620
rosa_wichuraiana Rw1G007230 Rw1G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 60
AgsI TTSAA 1 cut(s) 69
AhlI ACTAGT 1 cut(s) 61
AoxI GGCC 2 cut(s) 17, 166
AspLEI GCGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 1 cut(s) 30
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse1I ACTGG 2 cut(s) 49, 80
BseNI ACTGG 2 cut(s) 49, 80
BshFI GGCC 2 cut(s) 19, 168
BsnI GGCC 2 cut(s) 19, 168
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 19, 168
BsrI ACTGG 2 cut(s) 49, 80
BssNI GRCGYC 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 133
BstHHI GCGC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 158
BsuRI GGCC 2 cut(s) 19, 168
CfoI GCGC 1 cut(s) 31
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 59
CviJI RGCY 3 cut(s) 19, 152, 168
CviKI_1 RGCY 3 cut(s) 19, 152, 168
CviQI GTAC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 17
FaiI YATR 3 cut(s) 9, 87, 158
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 19, 168
HgaI GACGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 133
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 140, 177
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 133
HspAI GCGC 1 cut(s) 29
LpnPI CCDG 3 cut(s) 30, 93, 125
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 145
MnlI CCTC 1 cut(s) 142
MseI TTAA 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PkrI GCNGC 1 cut(s) 6
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 5
SetI ASST 1 cut(s) 148
SgeI CNNG 7 cut(s) 27, 46, 57, 74, 92, 152, 158
SpeI ACTAGT 1 cut(s) 61
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 62
TaiI ACGT 1 cut(s) 148
TatI WGTACW 1 cut(s) 58
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 136
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.