MD00G1051700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
9695792 .. 9701677
5886 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1051700.v1.1.491

Sequence Viewer

Length: 2055 bp
ATGAGGCCGGTGTATGTCAGGCAGAAGAGTAATAGTAGTGGCGGAACCCCGGGGCAACCAGCTTCGCCAATGATGTCACCAATGCACCACCATGGGAGGTCGGGGTCGGCTGGAATAGTGGGTGCGAAGAAAGCGCAGCACACGAAAGCCGCAGCGCAAAGGCTTGCACATGTGATGGCTCACAAACAAACTGATGACGATGATGAGGAGGACGACGATCTTTCTTATGATCTTGGCTTGTCAAGCGGCACAGGCAGCCTCGGACTTGCAGGCGGAAGATCAATGCGCCCACGCTCTCCAATGTCAGTTCGTGCTGCTCAAGAACAATCTACATCTACACGCGGACGATCATCACCGTCTCTTAACTCCATGGAACAACCACCTTCTACCCATTCGACACCAGCTAGTCGACCATATCAGTACGCAGAGCAACCGTCATCAGCTCATTCACTACCAGCAAGCCGACCATACAAATCCATCAACACGAAACCCATTAACTCTGTTGTAGAACAGCCACATTCTCTTCGCTCTTCAGTAGCTACTAGGCCATCTCAGACTTCGAACTCCAACGAATTACCTACCTCTGCTCGTTCTATATCGGGCATGAACTCTGCTCGATCATCTCAGCCAACTAATGCTGTCGAACAACCTACCTCTGCTCGTTCTATATCGGGCATGAACTCTGCTCGATCATCTCAGCCGACCCCTGCTGTTGAACAACCTACCTCTGCTCGTTCTATACCAGGCTTGAACTCTGCTCGGCCATCTCAGCCTACCAGTGCTGTCGAACAACCTACCTCTGCTCGTTCTTTAGCTGCTGCACGTCCACAGTTAGGAACCAAGCCAGTCCACATGGTGCCGGCTACTGTACCTATATCACTTAGGCCACCCACTTCTGCAGATCCTCCAGCTGATAATCGGAGAGAGGCAGCACCTATATCACTTAGGCCGCCCTCTACACCCGTTGGAACAGATGCTTCAGCTGATAATCGAAGAGATAAAAGGATGTCTTTGGATTTAGGGACTTTTAACATGAGAGAAAATCGGGCGCAGCGTTCTTCTGCTCTAGAAGACGAGCTTGATATGCTCCAAGAAGAAAATGAAAATCTACTTGAAAAGCTTCGACTTGCAGAAGAGAGGTGCGACGAAACAGAAGCAAGGGCTCGACAGCTTGAGCAGCAGCATGAGCATGTAAAGGAGGCAGCACTGCAGCAAAGGGAGGCTGCTTTGAGAGAGGCTGCACAGACTCAAGGTGGTAGTGGTCATGGTGGTAGAAATGACGAAGCAGAGTACGAACTGAGATCACTTCGGATTATGACTCAACGAATGATACTGAGTCGTGAAGAGATGGAAGAGGTGGTCTTGAAGAGATCTTGGCTAGCTCGGTACTGGAGCTTATGCGTTGAGCATGGTATTCATGCTGAAATAGCGGCATCAAGATATGAATTCTGGTCATCGCTTGCTCCTCGTCCAGCTGAAGCTGTATTAGCAGCCGGACAAAAAGCGAAAGAGGAGATAGTATCTTCTAGTGATCCGCATTACTCATGTCTTCCGTTAATTTCGGTATGTCAAGACAACAATGAACTAGATGAAAGAGAAGATAGTCCACGAGATTTGAATGAACTCTCAGGCGAGAGAAACATTGAGAGTATGCTCTTGGTGGAGAAGGGTCTGCGCGAACTTGCTTCGTTGAAGGTAGAGGAGGCAGTGGCAGTTGCAATGGCTCAACATCGACGCCCTAGTTCAATGAAAACTGGTGTTATAGTACTCAGCAAAGAGGAGTCTGAAGATATACTTTTCAAGCAGGCTTGGCTTGCATATTTCTGGAGAAGAGCTAAAAACCATGAAGTGGAACCAGATATAGCAGATGAACGCTTGCAATTCTGGATCAATCACAACTCCAAGTCACCTGCCACCTCACAGGATGCAGTTGATGTTGAGCGTGGTCTTCTGGAGCTGAAGAAGTTGGGAATCGAAACCCAGTTATGGAGAGAATCACGGAAATGGCTTGAGCATAATTCGATGCATAGAACAAAAAATCTGTCCGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

685

Amino Acids

75.46

Weight (kDa)

6.52

Isoelectric Point (pI)

67.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1918
Acc36I ACCTGC 1 cut(s) 1918
AccB1I GGYRCC 1 cut(s) 856
AccB7I CCANNNNNTGG 1 cut(s) 1849
AccI GTMKAC 1 cut(s) 409
AccII CGCG 2 cut(s) 342, 1677
AciI CCGC 8 cut(s) 42, 150, 246, 273, 342, 950, 1430, 1535
AclWI GGATC 3 cut(s) 896, 1526, 1895
AcoI YGGCCR 1 cut(s) 761
AcsI RAATTY 1 cut(s) 1445
AcuI CTGAAG 5 cut(s) 516, 963, 1497, 1806, 1979
AcyI GRCGYC 1 cut(s) 1735
AdeI CACNNNGTG 1 cut(s) 856
AfaI GTAC 5 cut(s) 422, 870, 1292, 1388, 1767
AfiI CCNNNNNNNGG 3 cut(s) 833, 1849, 1986
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 8 cut(s) 716, 751, 1115, 1366, 1618, 1693, 1746, 1801
AjiI CACGTC 1 cut(s) 824
AjnI CCWGG 1 cut(s) 742
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 3 cut(s) 896, 1526, 1895
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 5 cut(s) 5, 545, 761, 884, 947
ApoI RAATTY 1 cut(s) 1445
ArsI GACNNNNNNTTYG 1 cut(s) 2027
Asp700I GAANNNNTTC 1 cut(s) 1119
AspLEI GCGC 5 cut(s) 136, 157, 288, 1051, 1677
AsuC2I CCSGG 2 cut(s) 50, 51
AsuHPI GGTGA 3 cut(s) 69, 345, 1899
AsuII TTCGAA 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 1378
AvaI CYCGRG 1 cut(s) 49
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 1165
BauI CACGAG 1 cut(s) 1608
BbsI GAAGAC 3 cut(s) 1077, 1541, 1940
BccI CCATC 5 cut(s) 169, 485, 556, 772, 1342
BciT130I CCWGG 1 cut(s) 744
BcnI CCSGG 2 cut(s) 50, 51
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 7 cut(s) 405, 543, 1067, 1379, 1527, 1586, 1740
BfmI CTRYAG 2 cut(s) 897, 1208
BfuAI ACCTGC 1 cut(s) 1918
BglII AGATCT 1 cut(s) 1370
BmcAI AGTACT 1 cut(s) 1767
Bme1390I CCNGG 3 cut(s) 50, 51, 744
BmeT110I CYCGRG 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 824
BmiI GGNNCC 4 cut(s) 46, 838, 858, 1854
BmrFI CCNGG 3 cut(s) 50, 51, 744
BmrI ACTGGG 1 cut(s) 1975
BmsI GCATC 4 cut(s) 964, 1442, 1915, 2013
BmtI GCTAGC 1 cut(s) 1382
BmuI ACTGGG 1 cut(s) 1975
BpiI GAAGAC 3 cut(s) 1077, 1541, 1940
BpmI CTGGAG 4 cut(s) 891, 1411, 1846, 1973
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 4 cut(s) 303, 1193, 1233, 2030
BpuMI CCSGG 2 cut(s) 50, 51
BsaHI GRCGYC 1 cut(s) 1735
BsaJI CCNNGG 6 cut(s) 48, 49, 50, 91, 259, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 833, 1849, 1986
Bse118I RCCGGY 2 cut(s) 7, 859
Bse1I ACTGG 5 cut(s) 777, 845, 1394, 1759, 1981
Bse3DI GCAATG 1 cut(s) 1725
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 6 cut(s) 48, 49, 50, 91, 259, 369
BseGI GGATG 2 cut(s) 1011, 1930
BseLI CCNNNNNNNGG 3 cut(s) 833, 1849, 1986
BseMI GCAATG 1 cut(s) 1725
BseMII CTCAG 8 cut(s) 566, 638, 710, 782, 1289, 1325, 1641, 1783
BseNI ACTGG 5 cut(s) 777, 845, 1394, 1759, 1981
BseRI GAGGAG 5 cut(s) 221, 1455, 1526, 1715, 1793
BsgI GTGCAG 2 cut(s) 804, 1224
Bsh1236I CGCG 2 cut(s) 342, 1677
BshFI GGCC 5 cut(s) 7, 547, 763, 886, 949
BshNI GGYRCC 1 cut(s) 856
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 4 cut(s) 8, 50, 860, 1494
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 3 cut(s) 833, 1849, 1986
BsmAI GTCTC 1 cut(s) 363
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 1036
BsnI GGCC 5 cut(s) 7, 547, 763, 886, 949
BsoBI CYCGRG 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 1165
Bsp19I CCATGG 2 cut(s) 91, 369
BspACI CCGC 8 cut(s) 42, 150, 246, 273, 342, 950, 1430, 1535
BspANI GGCC 5 cut(s) 7, 547, 763, 886, 949
BspCNI CTCAG 8 cut(s) 565, 637, 709, 781, 1290, 1326, 1640, 1782
BspFNI CGCG 2 cut(s) 342, 1677
BspLI GGNNCC 4 cut(s) 46, 838, 858, 1854
BspMAI CTGCAG 2 cut(s) 901, 1212
BspMI ACCTGC 1 cut(s) 1918
BspOI GCTAGC 1 cut(s) 1382
BspPI GGATC 3 cut(s) 896, 1526, 1895
BspQI GCTCTTC 2 cut(s) 535, 1825
BspT104I TTCGAA 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 1725
BsrFI RCCGGY 2 cut(s) 7, 859
BsrI ACTGG 5 cut(s) 777, 845, 1394, 1759, 1981
BssAI RCCGGY 2 cut(s) 7, 859
BssECI CCNNGG 6 cut(s) 48, 49, 50, 91, 259, 369
BssNI GRCGYC 1 cut(s) 1735
BssSI CACGAG 1 cut(s) 1608
BssT1I CCWWGG 2 cut(s) 91, 369
Bst2BI CACGAG 1 cut(s) 1608
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 4 cut(s) 357, 435, 831, 868
Bst6I CTCTTC 9 cut(s) 20, 528, 535, 988, 1128, 1338, 1347, 1361, 1825
BstACI GRCGYC 1 cut(s) 1735
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 9 cut(s) 165, 271, 460, 861, 1380, 1461, 1806, 1815, 1877
BstDSI CCRYGG 2 cut(s) 91, 369
BstF5I GGATG 2 cut(s) 1011, 1930
BstFNI CGCG 2 cut(s) 342, 1677
BstHHI GCGC 5 cut(s) 136, 157, 288, 1051, 1677
BstMAI GTCTC 1 cut(s) 363
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 2 cut(s) 173, 1193
BstSCI CCNGG 3 cut(s) 48, 49, 742
BstSFI CTRYAG 2 cut(s) 897, 1208
BstUI CGCG 2 cut(s) 342, 1677
BstV2I GAAGAC 3 cut(s) 1077, 1541, 1940
BstX2I RGATCY 2 cut(s) 901, 1370
BstYI RGATCY 2 cut(s) 901, 1370
BsuRI GGCC 5 cut(s) 7, 547, 763, 886, 949
BtgI CCRYGG 2 cut(s) 91, 369
BtgZI GCGATG 1 cut(s) 1440
BtrI CACGTC 1 cut(s) 824
BtsCI GGATG 2 cut(s) 1011, 1930
BtsI GCAGTG 2 cut(s) 1205, 1713
BtsIMutI CAGTG 3 cut(s) 784, 1205, 1713
BveI ACCTGC 1 cut(s) 1918
Cac8I GCNNGC 9 cut(s) 165, 271, 460, 861, 1380, 1461, 1806, 1815, 1877
CfoI GCGC 5 cut(s) 136, 157, 288, 1051, 1677
Cfr10I RCCGGY 2 cut(s) 7, 859
Cfr9I CCCGGG 1 cut(s) 49
CseI GACGC 1 cut(s) 1743
Csp6I GTAC 5 cut(s) 421, 869, 1291, 1387, 1766
CspCI CAANNNNNGTGG 2 cut(s) 1596, 1631
CviQI GTAC 5 cut(s) 421, 869, 1291, 1387, 1766
DraIII CACNNNGTG 1 cut(s) 856
EaeI YGGCCR 1 cut(s) 761
Eam1104I CTCTTC 9 cut(s) 20, 528, 535, 988, 1128, 1338, 1347, 1361, 1825
EarI CTCTTC 9 cut(s) 20, 528, 535, 988, 1128, 1338, 1347, 1361, 1825
EciI GGCGGA 2 cut(s) 57, 288
Eco130I CCWWGG 2 cut(s) 91, 369
Eco24I GRGCYC 1 cut(s) 1165
Eco57I CTGAAG 5 cut(s) 516, 963, 1497, 1806, 1979
Eco88I CYCGRG 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 1445
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 2 cut(s) 91, 369
EcoT22I ATGCAT 1 cut(s) 2028
EcoT38I GRGCYC 1 cut(s) 1165
ErhI CCWWGG 2 cut(s) 91, 369
Esp3I CGTCTC 1 cut(s) 363
FalI AAGNNNNNCTT 6 cut(s) 994, 1026, 1062, 1094, 1779, 1811
FaqI GGGAC 1 cut(s) 1036
FblI GTMKAC 1 cut(s) 409
FokI GGATG 2 cut(s) 1018, 1937
FriOI GRGCYC 1 cut(s) 1165
FspBI CTAG 7 cut(s) 405, 543, 1067, 1379, 1527, 1586, 1740
GlaI GCGC 5 cut(s) 135, 156, 287, 1050, 1676
GsuI CTGGAG 4 cut(s) 891, 1411, 1846, 1973
HaeIII GGCC 5 cut(s) 7, 547, 763, 886, 949
HapII CCGG 4 cut(s) 8, 50, 860, 1494
HgaI GACGC 1 cut(s) 1743
HhaI GCGC 5 cut(s) 136, 157, 288, 1051, 1677
Hin1I GRCGYC 1 cut(s) 1735
Hin6I GCGC 5 cut(s) 134, 155, 286, 1049, 1675
HinP1I GCGC 5 cut(s) 134, 155, 286, 1049, 1675
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HindIII AAGCTT 1 cut(s) 1118
HinfI GANTC 6 cut(s) 1246, 1318, 1336, 1781, 1971, 1994
HpaII CCGG 4 cut(s) 8, 50, 860, 1494
HphI GGTGA 3 cut(s) 69, 345, 1899
Hpy166II GTNNAC 4 cut(s) 410, 827, 850, 1607
Hpy188I TCNGA 7 cut(s) 263, 555, 921, 1311, 1786, 2047, 2054
Hpy188III TCNNGA 9 cut(s) 320, 1067, 1340, 1363, 1437, 1571, 1825, 1885, 1952
Hpy8I GTNNAC 4 cut(s) 410, 827, 850, 1607
Hpy99I CGWCG 3 cut(s) 218, 1148, 1737
HpyAV CCTTC 3 cut(s) 393, 1660, 1687
HpyCH4III ACNGT 4 cut(s) 357, 435, 831, 868
HpyCH4IV ACGT 1 cut(s) 823
HpySE526I ACGT 1 cut(s) 823
Hsp92I GRCGYC 1 cut(s) 1735
HspAI GCGC 5 cut(s) 134, 155, 286, 1049, 1675
KroI GCCGGC 1 cut(s) 859
KroNI GCCGGC 1 cut(s) 861
LguI GCTCTTC 2 cut(s) 535, 1825
LmnI GCTCC 4 cut(s) 1092, 1392, 1468, 1954
LweI GCATC 4 cut(s) 964, 1442, 1915, 2013
MaeI CTAG 7 cut(s) 405, 543, 1067, 1379, 1527, 1586, 1740
MaeII ACGT 1 cut(s) 823
MaeIII GTNAC 2 cut(s) 75, 1905
MflI RGATCY 2 cut(s) 901, 1370
MhlI GDGCHC 1 cut(s) 1165
MluCI AATT 5 cut(s) 572, 1445, 1557, 1880, 2017
MlyI GAGTC 4 cut(s) 1240, 1312, 1345, 1790
MmeI TCCRAC 2 cut(s) 591, 946
Mph1103I ATGCAT 1 cut(s) 2028
MroNI GCCGGC 1 cut(s) 859
MroXI GAANNNNTTC 1 cut(s) 1119
MseI TTAA 4 cut(s) 363, 495, 1029, 1556
MslI CAYNNNNRTG 3 cut(s) 90, 1188, 2002
MspA1I CMGCKG 3 cut(s) 911, 983, 1475
MspI CCGG 4 cut(s) 8, 50, 860, 1494
MspR9I CCNGG 3 cut(s) 50, 51, 744
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 2 cut(s) 342, 1677
NaeI GCCGGC 1 cut(s) 861
NciI CCSGG 2 cut(s) 50, 51
NcoI CCATGG 2 cut(s) 91, 369
NgoMIV GCCGGC 1 cut(s) 859
NheI GCTAGC 1 cut(s) 1378
NlaIV GGNNCC 4 cut(s) 46, 838, 858, 1854
NmeAIII GCCGAG 1 cut(s) 739
NmuCI GTSAC 2 cut(s) 75, 1905
NsiI ATGCAT 1 cut(s) 2028
NspI RCATGY 2 cut(s) 173, 1193
NspV TTCGAA 1 cut(s) 560
PaqCI CACCTGC 1 cut(s) 1918
PciI ACATGT 1 cut(s) 169
PciSI GCTCTTC 2 cut(s) 535, 1825
PcsI WCGNNNNNNNCGW 1 cut(s) 1051
PdiI GCCGGC 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 1119
PfeI GAWTC 2 cut(s) 1971, 1994
PflMI CCANNNNNTGG 1 cut(s) 1849
PleI GAGTC 4 cut(s) 1240, 1312, 1344, 1789
PpsI GAGTC 4 cut(s) 1240, 1312, 1344, 1789
PscI ACATGT 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 4 cut(s) 46, 838, 858, 1854
PstI CTGCAG 2 cut(s) 901, 1212
PsuI RGATCY 2 cut(s) 901, 1370
PvuII CAGCTG 3 cut(s) 911, 983, 1475
RsaI GTAC 5 cut(s) 422, 870, 1292, 1388, 1767
RsaNI GTAC 5 cut(s) 421, 869, 1291, 1387, 1766
RseI CAYNNNNRTG 3 cut(s) 90, 1188, 2002
SalI GTCGAC 1 cut(s) 408
SapI GCTCTTC 2 cut(s) 535, 1825
SaqAI TTAA 4 cut(s) 363, 495, 1029, 1556
ScaI AGTACT 1 cut(s) 1767
SchI GAGTC 4 cut(s) 1240, 1312, 1345, 1790
ScrFI CCNGG 3 cut(s) 50, 51, 744
SduI GDGCHC 1 cut(s) 1165
SfaNI GCATC 4 cut(s) 964, 1442, 1915, 2013
SfcI CTRYAG 2 cut(s) 897, 1208
SfuI TTCGAA 1 cut(s) 560
SmaI CCCGGG 1 cut(s) 51
SmiMI CAYNNNNRTG 3 cut(s) 90, 1188, 2002
SmlI CTYRAG 4 cut(s) 318, 1172, 1248, 2009
SmoI CTYRAG 4 cut(s) 318, 1172, 1248, 2009
Sse9I AATT 5 cut(s) 572, 1445, 1557, 1880, 2017
SsiI CCGC 8 cut(s) 42, 150, 246, 273, 342, 950, 1430, 1535
SspMI CTAG 7 cut(s) 405, 543, 1067, 1379, 1527, 1586, 1740
StyD4I CCNGG 3 cut(s) 48, 49, 742
StyI CCWWGG 2 cut(s) 91, 369
TaaI ACNGT 4 cut(s) 357, 435, 831, 868
TaiI ACGT 1 cut(s) 826
TasI AATT 5 cut(s) 572, 1445, 1557, 1880, 2017
TatI WGTACW 1 cut(s) 1765
TauI GCSGC 4 cut(s) 152, 249, 952, 1433
TfiI GAWTC 2 cut(s) 1971, 1994
Tru1I TTAA 4 cut(s) 363, 495, 1029, 1556
Tru9I TTAA 4 cut(s) 363, 495, 1029, 1556
TscAI CASTG 3 cut(s) 784, 1212, 1713
TseFI GTSAC 2 cut(s) 75, 1905
Tsp45I GTSAC 2 cut(s) 75, 1905
TspGWI ACGGA 2 cut(s) 1542, 2014
TspMI CCCGGG 1 cut(s) 49
TspRI CASTG 3 cut(s) 784, 1212, 1713
Van91I CCANNNNNTGG 1 cut(s) 1849
XapI RAATTY 1 cut(s) 1445
XbaI TCTAGA 1 cut(s) 1066
XceI RCATGY 2 cut(s) 173, 1193
XmaI CCCGGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 1119
XspI CTAG 7 cut(s) 405, 543, 1067, 1379, 1527, 1586, 1740
ZrmI AGTACT 1 cut(s) 1767
Zsp2I ATGCAT 1 cut(s) 2028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.