Rmu_sc0002823.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002823.1
Physical Location & Seq
Reverse (-)
38339 .. 44507
6169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002823.1_g000008.1.cds

Sequence Viewer

Length: 1392 bp
atggatcgaatgaggccggtgtatgttaggcagaagagcaattccagtggcacgccgggaccgccaggttcgccgtcgatggcctctccaataatgcaccaccattcaaggtcggggtcccttggattgagcggtggcaagaaagcacagaacaccaaagccgcggctcaacggcttgcacatgtcatggcacacaaacccaccgacgacgacgatgaggatgaagacgacctctctattgatatcggcttgtcaagcggcaccgggagcatcggacttgccggtgttggaagaccaattcggcctcgctcgccggcgataaatgtatttcgtactgttcaagagccagcttcatctgcaaggccaatagcaccaggtggtcgatcagctctgtctgtcaagactgcccgctctgtggaaccacaaccatcatcaactcattcaacgccagctatgcgaccatttcagtccatcaactctgtggaaccaccaccttcagctcattcaacaccagcaagccggccatctcagtccataaacaatagaccaatcaacactcttgaacaatcaccgtattcctttcgttcttcaatgaataataaatcatctcagccatccagcaatgttgaacaaccgggttctgctcgttctatgtcaggcattagctctactgaacaaccccagtctcttcgtccttcattagctacacgatcatctcagagtactagtaccaatgagcaaccaaactctgctcgttctatggcagcggcagcagcacgtccacagttagggaccaagccagtccacatggtaccggctagtgtacctatatcacttaggccgtccccttctgcagatactccctctgagagtaggagagatccgccaggacctatattattaaggccaccctcttctgcaatgctatattctgacggttcagaagagaagtgtgaggaaacagaggcaagagctcggcagcttgagaaacaggctgctttgagagtggctgcacaaactcatgatgatagaaatgatgaagctgagtccgaactgcaaacaattcggattatgactcagagaatgatactgactcgtgaagagaaggaagacgttgttttgaagagatcctggcttgctcggtactggagtttatgtgttgaacatggtatacatgctgagattgctacagcacgatctgaattctggtcaactcttgctcctgctcctgttgaagctgtactagaagctggaaagaaagcgagagagcagacagttgaacgtggtctcagtgagcttaggaagttgggaatcgaaatccaactatggaaaaaatcgcgcaaagggcttgagcttgattcgatccctataacacggcagtctgacttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

50.08

Weight (kDa)

9.51

Isoelectric Point (pI)

76.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 811
AccB1I GGYRCC 2 cut(s) 260, 811
AccBSI CCGCTC 2 cut(s) 132, 411
AccI GTMKAC 1 cut(s) 1171
AccII CGCG 2 cut(s) 164, 1339
AciI CCGC 8 cut(s) 62, 132, 162, 164, 258, 409, 767, 884
AclWI GGATC 4 cut(s) 12, 875, 1122, 1357
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 1 cut(s) 1202
AcuI CTGAAG 1 cut(s) 480
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 7 cut(s) 334, 724, 730, 813, 825, 1145, 1242
AfiI CCNNNNNNNGG 2 cut(s) 415, 788
AflIII ACRYGT 1 cut(s) 181
AhlI ACTAGT 1 cut(s) 725
AjiI CACGTC 1 cut(s) 779
AjnI CCWGG 4 cut(s) 64, 373, 886, 1130
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 2 cut(s) 690, 1292
AlwI GGATC 4 cut(s) 12, 875, 1122, 1357
AoxI GGCC 7 cut(s) 14, 81, 302, 362, 521, 839, 905
ApeKI GCWGC 6 cut(s) 764, 770, 773, 979, 995, 1010
ApoI RAATTY 1 cut(s) 1202
Asp718I GGTACC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 1341
AspS9I GGNCC 4 cut(s) 59, 117, 792, 890
AsuC2I CCSGG 3 cut(s) 57, 265, 636
AsuHPI GGTGA 1 cut(s) 561
AvaII GGWCC 4 cut(s) 59, 117, 792, 890
BaeI ACNNNNGTAYC 2 cut(s) 1135, 1168
BanI GGYRCC 2 cut(s) 260, 811
BanII GRGCYC 1 cut(s) 976
BauI CACGAG 1 cut(s) 1095
BbsI GAAGAC 3 cut(s) 231, 298, 1116
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 6 cut(s) 776, 782, 785, 982, 991, 997
BccI CCATC 5 cut(s) 73, 436, 479, 532, 622
BceAI ACGGC 3 cut(s) 58, 188, 826
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 4 cut(s) 66, 375, 888, 1132
BcnI CCSGG 3 cut(s) 57, 265, 636
BcoDI GTCTC 2 cut(s) 690, 1292
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 3 cut(s) 726, 819, 1244
BfmI CTRYAG 2 cut(s) 852, 1188
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 7 cut(s) 57, 66, 265, 375, 636, 888, 1132
Bme18I GGWCC 4 cut(s) 59, 117, 792, 890
BmgBI CACGTC 1 cut(s) 779
BmgT120I GGNCC 4 cut(s) 59, 117, 792, 890
BmiI GGNNCC 8 cut(s) 60, 118, 119, 262, 420, 486, 793, 813
BmrFI CCNGG 7 cut(s) 57, 66, 265, 375, 636, 888, 1132
BmrI ACTGGG 1 cut(s) 676
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 676
BpiI GAAGAC 3 cut(s) 231, 298, 1116
BpmI CTGGAG 1 cut(s) 1168
Bpu10I CCTNAGC 1 cut(s) 1298
BpuEI CTTGAG 2 cut(s) 1004, 1370
BpuMI CCSGG 3 cut(s) 57, 265, 636
BsaI GGTCTC 1 cut(s) 1292
BsaJI CCNNGG 2 cut(s) 121, 162
BsaXI ACNNNNNCTCC 4 cut(s) 1141, 1171, 1204, 1234
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 788
Bse118I RCCGGY 5 cut(s) 16, 281, 313, 519, 814
Bse1I ACTGG 4 cut(s) 45, 682, 800, 1151
Bse3DI GCAATG 2 cut(s) 628, 927
BseBI CCWGG 4 cut(s) 66, 375, 888, 1132
BseDI CCNNGG 2 cut(s) 121, 162
BseGI GGATG 2 cut(s) 226, 614
BseLI CCNNNNNNNGG 2 cut(s) 415, 788
BseMI GCAATG 2 cut(s) 628, 927
BseMII CTCAG 8 cut(s) 542, 623, 731, 858, 1035, 1091, 1170, 1303
BseNI ACTGG 4 cut(s) 45, 682, 800, 1151
BseXI GCAGC 6 cut(s) 776, 782, 785, 982, 991, 997
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 2 cut(s) 164, 1339
BshFI GGCC 7 cut(s) 16, 83, 304, 364, 523, 841, 907
BshNI GGYRCC 2 cut(s) 260, 811
BsiHKAI GWGCWC 1 cut(s) 976
BsiSI CCGG 8 cut(s) 17, 56, 264, 282, 314, 520, 635, 815
BslFI GGGAC 4 cut(s) 72, 103, 805, 829
BslI CCNNNNNNNGG 2 cut(s) 415, 788
BsmAI GTCTC 2 cut(s) 690, 1292
BsmFI GGGAC 4 cut(s) 72, 103, 805, 829
BsnI GGCC 7 cut(s) 16, 83, 304, 364, 523, 841, 907
Bso31I GGTCTC 1 cut(s) 1292
Bsp1286I GDGCHC 1 cut(s) 976
Bsp143I GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
BspACI CCGC 8 cut(s) 62, 132, 162, 164, 258, 409, 767, 884
BspANI GGCC 7 cut(s) 16, 83, 304, 364, 523, 841, 907
BspCNI CTCAG 8 cut(s) 541, 622, 730, 859, 1036, 1090, 1171, 1302
BspFNI CGCG 2 cut(s) 164, 1339
BspHI TCATGA 1 cut(s) 1021
BspLI GGNNCC 8 cut(s) 60, 118, 119, 262, 420, 486, 793, 813
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 4 cut(s) 12, 875, 1122, 1357
BspQI GCTCTTC 1 cut(s) 29
BspT107I GGYRCC 2 cut(s) 260, 811
BspTNI GGTCTC 1 cut(s) 1292
BsrBI CCGCTC 2 cut(s) 132, 411
BsrDI GCAATG 2 cut(s) 628, 927
BsrFI RCCGGY 5 cut(s) 16, 281, 313, 519, 814
BsrI ACTGG 4 cut(s) 45, 682, 800, 1151
BssAI RCCGGY 5 cut(s) 16, 281, 313, 519, 814
BssECI CCNNGG 2 cut(s) 121, 162
BssMI GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
BssNAI GTATAC 1 cut(s) 1172
BssSI CACGAG 1 cut(s) 1095
BssT1I CCWWGG 1 cut(s) 121
Bst1107I GTATAC 1 cut(s) 1172
Bst2BI CACGAG 1 cut(s) 1095
Bst2UI CCWGG 4 cut(s) 66, 375, 888, 1132
Bst4CI ACNGT 5 cut(s) 337, 573, 786, 938, 1276
Bst6I CTCTTC 6 cut(s) 29, 693, 919, 939, 1095, 1118
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 226, 614
BstFNI CGCG 2 cut(s) 164, 1339
BstHHI GCGC 1 cut(s) 1341
BstKTI GATC 7 cut(s) 7, 386, 713, 883, 1130, 1199, 1365
BstMAI GTCTC 2 cut(s) 690, 1292
BstMBI GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
BstNI CCWGG 4 cut(s) 66, 375, 888, 1132
BstNSI RCATGY 2 cut(s) 185, 1178
BstSCI CCNGG 7 cut(s) 55, 64, 263, 373, 634, 886, 1130
BstSFI CTRYAG 2 cut(s) 852, 1188
BstUI CGCG 2 cut(s) 164, 1339
BstV1I GCAGC 6 cut(s) 776, 782, 785, 982, 991, 997
BstV2I GAAGAC 3 cut(s) 231, 298, 1116
BstX2I RGATCY 2 cut(s) 880, 1127
BstYI RGATCY 2 cut(s) 880, 1127
BstZ17I GTATAC 1 cut(s) 1172
BsuRI GGCC 7 cut(s) 16, 83, 304, 364, 523, 841, 907
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 779
BtsCI GGATG 2 cut(s) 226, 614
BtsIMutI CAGTG 2 cut(s) 52, 1297
CciI TCATGA 1 cut(s) 1021
CfoI GCGC 1 cut(s) 1341
Cfr10I RCCGGY 5 cut(s) 16, 281, 313, 519, 814
Cfr13I GGNCC 4 cut(s) 59, 117, 792, 890
Cfr42I CCGCGG 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 7 cut(s) 333, 723, 729, 812, 824, 1144, 1241
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 6 cut(s) 182, 187, 808, 1022, 1166, 1175
CviQI GTAC 7 cut(s) 333, 723, 729, 812, 824, 1144, 1241
DpnI GATC 7 cut(s) 6, 385, 712, 882, 1129, 1198, 1364
DpnII GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
DraIII CACNNNGTG 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 6 cut(s) 29, 693, 919, 939, 1095, 1118
EarI CTCTTC 6 cut(s) 29, 693, 919, 939, 1095, 1118
EciI GGCGGA 1 cut(s) 873
Ecl136II GAGCTC 1 cut(s) 974
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 976
Eco31I GGTCTC 1 cut(s) 1292
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 4 cut(s) 59, 117, 792, 890
Eco53kI GAGCTC 1 cut(s) 974
Eco57I CTGAAG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 974
EcoO109I RGGNCCY 2 cut(s) 117, 890
EcoRI GAATTC 1 cut(s) 1202
EcoRII CCWGG 4 cut(s) 64, 373, 886, 1130
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 976
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 6 cut(s) 185, 190, 811, 1025, 1169, 1178
FaqI GGGAC 4 cut(s) 72, 103, 805, 829
FatI CATG 6 cut(s) 181, 186, 807, 1021, 1165, 1174
FauI CCCGC 1 cut(s) 416
FblI GTMKAC 1 cut(s) 1171
FokI GGATG 2 cut(s) 233, 601
FriOI GRGCYC 1 cut(s) 976
FspBI CTAG 3 cut(s) 726, 819, 1244
GlaI GCGC 1 cut(s) 1340
GsuI CTGGAG 1 cut(s) 1168
HaeIII GGCC 7 cut(s) 16, 83, 304, 364, 523, 841, 907
HapII CCGG 8 cut(s) 17, 56, 264, 282, 314, 520, 635, 815
HhaI GCGC 1 cut(s) 1341
Hin1II CATG 6 cut(s) 185, 190, 811, 1025, 1169, 1178
Hin6I GCGC 1 cut(s) 1339
HinP1I GCGC 1 cut(s) 1339
HincII GTYRAC 1 cut(s) 1212
HindII GTYRAC 1 cut(s) 1212
HinfI GANTC 5 cut(s) 1046, 1075, 1093, 1311, 1358
HpaII CCGG 8 cut(s) 17, 56, 264, 282, 314, 520, 635, 815
HphI GGTGA 1 cut(s) 561
Hpy166II GTNNAC 5 cut(s) 782, 805, 824, 1172, 1212
Hpy188III TCNNGA 5 cut(s) 341, 400, 560, 1022, 1097
Hpy8I GTNNAC 5 cut(s) 782, 805, 824, 1172, 1212
Hpy99I CGWCG 4 cut(s) 79, 209, 212, 215
HpyAV CCTTC 4 cut(s) 504, 705, 858, 1099
HpyCH4III ACNGT 5 cut(s) 337, 573, 786, 938, 1276
HpyCH4IV ACGT 3 cut(s) 778, 1113, 1282
HpyCH4V TGCA 7 cut(s) 97, 179, 359, 854, 920, 1013, 1057
HpySE526I ACGT 3 cut(s) 778, 1113, 1282
Hsp92II CATG 6 cut(s) 185, 190, 811, 1025, 1169, 1178
HspAI GCGC 1 cut(s) 1339
KflI GGGWCCC 1 cut(s) 117
KpnI GGTACC 1 cut(s) 815
KroI GCCGGC 2 cut(s) 313, 519
KroNI GCCGGC 2 cut(s) 315, 521
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 3 cut(s) 267, 1225, 1231
Lsp1109I GCAGC 6 cut(s) 776, 782, 785, 982, 991, 997
LweI GCATC 1 cut(s) 279
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 3 cut(s) 726, 819, 1244
MaeII ACGT 3 cut(s) 778, 1113, 1282
MalI GATC 7 cut(s) 6, 385, 712, 882, 1129, 1198, 1364
MbiI CCGCTC 2 cut(s) 132, 411
MboI GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
MflI RGATCY 2 cut(s) 880, 1127
MhlI GDGCHC 1 cut(s) 976
MluCI AATT 4 cut(s) 40, 297, 1062, 1202
MlyI GAGTC 3 cut(s) 1055, 1069, 1087
MmeI TCCRAC 2 cut(s) 268, 1345
MnlI CCTC 9 cut(s) 6, 94, 211, 242, 315, 874, 922, 949, 958
MreI CGCCGGCG 1 cut(s) 313
MroNI GCCGGC 2 cut(s) 313, 519
MseI TTAA 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 164, 767
MspI CCGG 8 cut(s) 17, 56, 264, 282, 314, 520, 635, 815
MspR9I CCNGG 7 cut(s) 57, 66, 265, 375, 636, 888, 1132
MvaI CCWGG 4 cut(s) 66, 375, 888, 1132
MvnI CGCG 2 cut(s) 164, 1339
NaeI GCCGGC 2 cut(s) 315, 521
NciI CCSGG 3 cut(s) 57, 265, 636
NdeII GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
NgoMIV GCCGGC 2 cut(s) 313, 519
NlaIII CATG 6 cut(s) 185, 190, 811, 1025, 1169, 1178
NlaIV GGNNCC 8 cut(s) 60, 118, 119, 262, 420, 486, 793, 813
NmeAIII GCCGAG 1 cut(s) 955
NspI RCATGY 2 cut(s) 185, 1178
PagI TCATGA 1 cut(s) 1021
PciI ACATGT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 29
PdiI GCCGGC 2 cut(s) 315, 521
PfeI GAWTC 2 cut(s) 1311, 1358
PleI GAGTC 3 cut(s) 1054, 1069, 1087
PpsI GAGTC 3 cut(s) 1054, 1069, 1087
PpuMI RGGWCCY 2 cut(s) 117, 890
PscI ACATGT 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 976
Psp5II RGGWCCY 2 cut(s) 117, 890
Psp6I CCWGG 4 cut(s) 64, 373, 886, 1130
PspGI CCWGG 4 cut(s) 64, 373, 886, 1130
PspN4I GGNNCC 8 cut(s) 60, 118, 119, 262, 420, 486, 793, 813
PspPI GGNCC 4 cut(s) 59, 117, 792, 890
PspPPI RGGWCCY 2 cut(s) 117, 890
PsrI GAACNNNNNNTAC 2 cut(s) 1155, 1187
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 2 cut(s) 880, 1127
RsaI GTAC 7 cut(s) 334, 724, 730, 813, 825, 1145, 1242
RsaNI GTAC 7 cut(s) 333, 723, 729, 812, 824, 1144, 1241
SacI GAGCTC 1 cut(s) 976
SacII CCGCGG 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 902
Sau3AI GATC 7 cut(s) 4, 383, 710, 880, 1127, 1196, 1362
Sau96I GGNCC 4 cut(s) 59, 117, 792, 890
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 3 cut(s) 1055, 1069, 1087
ScrFI CCNGG 7 cut(s) 57, 66, 265, 375, 636, 888, 1132
SduI GDGCHC 1 cut(s) 976
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 852, 1188
Sfr303I CCGCGG 1 cut(s) 165
SgrAI CRCCGGYG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 4 cut(s) 59, 117, 792, 890
SmlI CTYRAG 2 cut(s) 983, 1349
SmoI CTYRAG 2 cut(s) 983, 1349
SpeI ACTAGT 1 cut(s) 725
Sse9I AATT 4 cut(s) 40, 297, 1062, 1202
SsiI CCGC 8 cut(s) 62, 132, 162, 164, 258, 409, 767, 884
SspMI CTAG 3 cut(s) 726, 819, 1244
SstI GAGCTC 1 cut(s) 976
StyD4I CCNGG 7 cut(s) 55, 64, 263, 373, 634, 886, 1130
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 5 cut(s) 337, 573, 786, 938, 1276
TaiI ACGT 3 cut(s) 781, 1116, 1285
TaqI TCGA 5 cut(s) 7, 77, 382, 1314, 1361
TasI AATT 4 cut(s) 40, 297, 1062, 1202
TatI WGTACW 2 cut(s) 722, 1240
TauI GCSGC 4 cut(s) 164, 167, 261, 770
TfiI GAWTC 2 cut(s) 1311, 1358
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TscAI CASTG 2 cut(s) 52, 1297
TseI GCWGC 6 cut(s) 764, 770, 773, 979, 995, 1010
TspDTI ATGAA 5 cut(s) 237, 342, 608, 687, 1053
TspRI CASTG 2 cut(s) 52, 1297
VpaK11BI GGWCC 4 cut(s) 59, 117, 792, 890
XapI RAATTY 1 cut(s) 1202
XceI RCATGY 2 cut(s) 185, 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 1171
XspI CTAG 3 cut(s) 726, 819, 1244
ZrmI AGTACT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.