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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04230 |
| malus_domestica | MD00G1051700.v1.1 MD12G1231500.v1.1 |
| prunus_persica | Prupe.6G335100_v2.0.a1 |
| pyrus_communis | pycom04g19150 pycom12g21430 |
| rosa_chinensis | RchiOBHm_Chr3g0452891 |
| rosa_laevigata | RLG00000025562 |
| rosa_multiflora | Rmu_sc0002823.1_g000008 |
| rosa_roxburghii | Rroxscaffold_6G00429900 |
| rosa_rugosa | Rorug02G0643400 Rorug02G0643500 Rorug02G0643500 Rorug02G0643500 Rorug02G0643500 |
| rosa_samantha | Rh3AG046200 Rh3BG048700 Rh3CG047300 Rh3DG048300 |
| rosa_wichuraiana | Rw3G003630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1180, 1278 |
| AccB1I | GGYRCC | 1 cut(s) | 865 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1832 |
| AccI | GTMKAC | 1 cut(s) | 418 |
| AccII | CGCG | 1 cut(s) | 1725 |
| AciI | CCGC | 7 cut(s) | 159, 255, 282, 836, 959, 1754, 1903 |
| AclWI | GGATC | 2 cut(s) | 12, 905 |
| AcoI | YGGCCR | 1 cut(s) | 770 |
| AcsI | RAATTY | 1 cut(s) | 1547 |
| AcuI | CTGAAG | 3 cut(s) | 525, 972, 1599 |
| AcyI | GRCGYC | 2 cut(s) | 407, 1783 |
| AdeI | CACNNNGTG | 1 cut(s) | 865 |
| AfaI | GTAC | 4 cut(s) | 431, 879, 1382, 1490 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 842, 1832 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 9 cut(s) | 760, 1124, 1251, 1284, 1466, 1666, 1741, 1794, 1819 |
| AjiI | CACGTC | 1 cut(s) | 833 |
| AjnI | CCWGG | 1 cut(s) | 751 |
| Alw26I | GTCTC | 1 cut(s) | 372 |
| AlwI | GGATC | 2 cut(s) | 12, 905 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 875 |
| Ama87I | CYCGRG | 1 cut(s) | 58 |
| AoxI | GGCC | 4 cut(s) | 14, 770, 893, 956 |
| ApoI | RAATTY | 1 cut(s) | 1547 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1128 |
| AspLEI | GCGC | 5 cut(s) | 145, 166, 297, 1060, 1725 |
| AsuC2I | CCSGG | 2 cut(s) | 59, 60 |
| AsuHPI | GGTGA | 2 cut(s) | 78, 354 |
| AsuII | TTCGAA | 2 cut(s) | 569, 1842 |
| AsuNHI | GCTAGC | 1 cut(s) | 1480 |
| AvaI | CYCGRG | 1 cut(s) | 58 |
| BanI | GGYRCC | 1 cut(s) | 865 |
| BanII | GRGCYC | 1 cut(s) | 1174 |
| BauI | CACGAG | 1 cut(s) | 1656 |
| BbsI | GAAGAC | 2 cut(s) | 1086, 1223 |
| BccI | CCATC | 8 cut(s) | 178, 373, 397, 494, 781, 970, 1432, 1826 |
| BciT130I | CCWGG | 1 cut(s) | 753 |
| BcnI | CCSGG | 2 cut(s) | 59, 60 |
| BcoDI | GTCTC | 1 cut(s) | 372 |
| BfaI | CTAG | 5 cut(s) | 414, 552, 1076, 1481, 1788 |
| BfmI | CTRYAG | 2 cut(s) | 906, 1298 |
| BfuAI | ACCTGC | 2 cut(s) | 1180, 1278 |
| Bme1390I | CCNGG | 3 cut(s) | 59, 60, 753 |
| BmeT110I | CYCGRG | 1 cut(s) | 58 |
| BmgBI | CACGTC | 1 cut(s) | 833 |
| BmiI | GGNNCC | 3 cut(s) | 55, 847, 867 |
| BmrFI | CCNGG | 3 cut(s) | 59, 60, 753 |
| BmsI | GCATC | 1 cut(s) | 973 |
| BmtI | GCTAGC | 1 cut(s) | 1484 |
| BpiI | GAAGAC | 2 cut(s) | 1086, 1223 |
| BpmI | CTGGAG | 2 cut(s) | 900, 1513 |
| Bpu14I | TTCGAA | 2 cut(s) | 569, 1842 |
| BpuEI | CTTGAG | 2 cut(s) | 1202, 1323 |
| BpuMI | CCSGG | 2 cut(s) | 59, 60 |
| Bsa29I | ATCGAT | 2 cut(s) | 1471, 1633 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1875 |
| BsaHI | GRCGYC | 2 cut(s) | 407, 1783 |
| BsaJI | CCNNGG | 5 cut(s) | 57, 58, 59, 100, 268 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 842, 1832 |
| Bse118I | RCCGGY | 1 cut(s) | 16 |
| Bse1I | ACTGG | 4 cut(s) | 786, 854, 1496, 1807 |
| Bse3DI | GCAATG | 1 cut(s) | 1773 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1875 |
| BseBI | CCWGG | 1 cut(s) | 753 |
| BseCI | ATCGAT | 2 cut(s) | 1471, 1633 |
| BseDI | CCNNGG | 5 cut(s) | 57, 58, 59, 100, 268 |
| BseGI | GGATG | 3 cut(s) | 15, 1020, 1570 |
| BseJI | GATNNNNATC | 1 cut(s) | 1875 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 842, 1832 |
| BseMI | GCAATG | 1 cut(s) | 1773 |
| BseMII | CTCAG | 7 cut(s) | 575, 647, 719, 791, 1379, 1415, 1689 |
| BseNI | ACTGG | 4 cut(s) | 786, 854, 1496, 1807 |
| BseRI | GAGGAG | 3 cut(s) | 230, 1557, 1763 |
| BsgI | GTGCAG | 2 cut(s) | 813, 1314 |
| Bsh1236I | CGCG | 1 cut(s) | 1725 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1633 |
| BshFI | GGCC | 4 cut(s) | 16, 772, 895, 958 |
| BshNI | GGYRCC | 1 cut(s) | 865 |
| BshVI | ATCGAT | 2 cut(s) | 1471, 1633 |
| BsiEI | CGRYCG | 1 cut(s) | 1633 |
| BsiHKCI | CYCGRG | 1 cut(s) | 58 |
| BsiSI | CCGG | 3 cut(s) | 17, 59, 1596 |
| BslFI | GGGAC | 2 cut(s) | 366, 1045 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 842, 1832 |
| BsmAI | GTCTC | 1 cut(s) | 372 |
| BsmBI | CGTCTC | 1 cut(s) | 372 |
| BsmFI | GGGAC | 2 cut(s) | 366, 1045 |
| BsmI | GAATGC | 1 cut(s) | 1273 |
| BsnI | GGCC | 4 cut(s) | 16, 772, 895, 958 |
| BsoBI | CYCGRG | 1 cut(s) | 58 |
| Bsp119I | TTCGAA | 2 cut(s) | 569, 1842 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1174 |
| Bsp19I | CCATGG | 1 cut(s) | 100 |
| BspACI | CCGC | 7 cut(s) | 159, 255, 282, 836, 959, 1754, 1903 |
| BspANI | GGCC | 4 cut(s) | 16, 772, 895, 958 |
| BspCNI | CTCAG | 7 cut(s) | 574, 646, 718, 790, 1380, 1416, 1688 |
| BspDI | ATCGAT | 2 cut(s) | 1471, 1633 |
| BspFNI | CGCG | 1 cut(s) | 1725 |
| BspLI | GGNNCC | 3 cut(s) | 55, 847, 867 |
| BspMAI | CTGCAG | 2 cut(s) | 910, 1302 |
| BspMI | ACCTGC | 2 cut(s) | 1180, 1278 |
| BspOI | GCTAGC | 1 cut(s) | 1484 |
| BspPI | GGATC | 2 cut(s) | 12, 905 |
| BspQI | GCTCTTC | 2 cut(s) | 29, 544 |
| BspT104I | TTCGAA | 2 cut(s) | 569, 1842 |
| BspT107I | GGYRCC | 1 cut(s) | 865 |
| BsrDI | GCAATG | 1 cut(s) | 1773 |
| BsrFI | RCCGGY | 1 cut(s) | 16 |
| BsrI | ACTGG | 4 cut(s) | 786, 854, 1496, 1807 |
| BssAI | RCCGGY | 1 cut(s) | 16 |
| BssECI | CCNNGG | 5 cut(s) | 57, 58, 59, 100, 268 |
| BssNI | GRCGYC | 2 cut(s) | 407, 1783 |
| BssSI | CACGAG | 1 cut(s) | 1656 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| Bst2BI | CACGAG | 1 cut(s) | 1656 |
| Bst2UI | CCWGG | 1 cut(s) | 753 |
| Bst4CI | ACNGT | 4 cut(s) | 366, 444, 877, 1839 |
| Bst6I | CTCTTC | 7 cut(s) | 29, 537, 544, 907, 1137, 1428, 1447 |
| BstACI | GRCGYC | 2 cut(s) | 407, 1783 |
| BstBI | TTCGAA | 2 cut(s) | 569, 1842 |
| BstDSI | CCRYGG | 1 cut(s) | 100 |
| BstF5I | GGATG | 3 cut(s) | 15, 1020, 1570 |
| BstFNI | CGCG | 1 cut(s) | 1725 |
| BstHHI | GCGC | 5 cut(s) | 145, 166, 297, 1060, 1725 |
| BstMAI | GTCTC | 1 cut(s) | 372 |
| BstMCI | CGRYCG | 1 cut(s) | 1633 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 140, 252, 261, 264, 778, 1093, 1186, 1529, 1589 |
| BstNI | CCWGG | 1 cut(s) | 753 |
| BstNSI | RCATGY | 2 cut(s) | 182, 1702 |
| BstSCI | CCNGG | 3 cut(s) | 57, 58, 751 |
| BstSFI | CTRYAG | 2 cut(s) | 906, 1298 |
| BstUI | CGCG | 1 cut(s) | 1725 |
| BstV2I | GAAGAC | 2 cut(s) | 1086, 1223 |
| BstX2I | RGATCY | 1 cut(s) | 910 |
| BstYI | RGATCY | 1 cut(s) | 910 |
| Bsu15I | ATCGAT | 2 cut(s) | 1471, 1633 |
| BsuRI | GGCC | 4 cut(s) | 16, 772, 895, 958 |
| BsuTUI | ATCGAT | 2 cut(s) | 1471, 1633 |
| BtgI | CCRYGG | 1 cut(s) | 100 |
| BtgZI | GCGATG | 1 cut(s) | 1542 |
| BtrI | CACGTC | 1 cut(s) | 833 |
| BtsCI | GGATG | 3 cut(s) | 15, 1020, 1570 |
| BtsI | GCAGTG | 2 cut(s) | 52, 1295 |
| BtsIMutI | CAGTG | 4 cut(s) | 52, 549, 793, 1295 |
| BveI | ACCTGC | 2 cut(s) | 1180, 1278 |
| CaiI | CAGNNNCTG | 1 cut(s) | 875 |
| CfoI | GCGC | 5 cut(s) | 145, 166, 297, 1060, 1725 |
| Cfr10I | RCCGGY | 1 cut(s) | 16 |
| Cfr9I | CCCGGG | 1 cut(s) | 58 |
| ClaI | ATCGAT | 2 cut(s) | 1471, 1633 |
| CseI | GACGC | 2 cut(s) | 415, 1791 |
| Csp6I | GTAC | 4 cut(s) | 430, 878, 1381, 1489 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 28, 63, 1644, 1679 |
| CviQI | GTAC | 4 cut(s) | 430, 878, 1381, 1489 |
| DraIII | CACNNNGTG | 1 cut(s) | 865 |
| EaeI | YGGCCR | 1 cut(s) | 770 |
| Eam1104I | CTCTTC | 7 cut(s) | 29, 537, 544, 907, 1137, 1428, 1447 |
| EarI | CTCTTC | 7 cut(s) | 29, 537, 544, 907, 1137, 1428, 1447 |
| EciI | GGCGGA | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 1174 |
| Eco57I | CTGAAG | 3 cut(s) | 525, 972, 1599 |
| Eco88I | CYCGRG | 1 cut(s) | 58 |
| EcoRI | GAATTC | 1 cut(s) | 1547 |
| EcoRII | CCWGG | 1 cut(s) | 751 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| EcoT22I | ATGCAT | 1 cut(s) | 1265 |
| EcoT38I | GRGCYC | 1 cut(s) | 1174 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| Esp3I | CGTCTC | 1 cut(s) | 372 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1003, 1035, 1071, 1103, 1215, 1247 |
| FaqI | GGGAC | 2 cut(s) | 366, 1045 |
| FblI | GTMKAC | 1 cut(s) | 418 |
| FokI | GGATG | 3 cut(s) | 22, 1027, 1557 |
| FriOI | GRGCYC | 1 cut(s) | 1174 |
| FspBI | CTAG | 5 cut(s) | 414, 552, 1076, 1481, 1788 |
| GlaI | GCGC | 5 cut(s) | 144, 165, 296, 1059, 1724 |
| GsuI | CTGGAG | 2 cut(s) | 900, 1513 |
| HaeIII | GGCC | 4 cut(s) | 16, 772, 895, 958 |
| HapII | CCGG | 3 cut(s) | 17, 59, 1596 |
| HgaI | GACGC | 2 cut(s) | 415, 1791 |
| HhaI | GCGC | 5 cut(s) | 145, 166, 297, 1060, 1725 |
| Hin1I | GRCGYC | 2 cut(s) | 407, 1783 |
| Hin6I | GCGC | 5 cut(s) | 143, 164, 295, 1058, 1723 |
| HinP1I | GCGC | 5 cut(s) | 143, 164, 295, 1058, 1723 |
| HincII | GTYRAC | 1 cut(s) | 419 |
| HindII | GTYRAC | 1 cut(s) | 419 |
| HindIII | AAGCTT | 2 cut(s) | 1127, 1245 |
| HinfI | GANTC | 3 cut(s) | 1336, 1408, 1426 |
| HpaII | CCGG | 3 cut(s) | 17, 59, 1596 |
| HphI | GGTGA | 2 cut(s) | 78, 354 |
| Hpy166II | GTNNAC | 3 cut(s) | 419, 859, 1655 |
| Hpy188I | TCNGA | 6 cut(s) | 9, 272, 564, 930, 1002, 1401 |
| Hpy188III | TCNNGA | 4 cut(s) | 1076, 1430, 1463, 1539 |
| Hpy8I | GTNNAC | 3 cut(s) | 419, 859, 1655 |
| Hpy99I | CGWCG | 4 cut(s) | 227, 409, 1157, 1785 |
| HpyAV | CCTTC | 3 cut(s) | 1202, 1708, 1735 |
| HpyCH4III | ACNGT | 4 cut(s) | 366, 444, 877, 1839 |
| HpyCH4IV | ACGT | 1 cut(s) | 832 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 140, 252, 261, 264, 778, 1093, 1186, 1529, 1589 |
| HpySE526I | ACGT | 1 cut(s) | 832 |
| Hsp92I | GRCGYC | 2 cut(s) | 407, 1783 |
| HspAI | GCGC | 5 cut(s) | 143, 164, 295, 1058, 1723 |
| LguI | GCTCTTC | 2 cut(s) | 29, 544 |
| LmnI | GCTCC | 3 cut(s) | 1101, 1494, 1570 |
| LweI | GCATC | 1 cut(s) | 973 |
| MaeI | CTAG | 5 cut(s) | 414, 552, 1076, 1481, 1788 |
| MaeII | ACGT | 1 cut(s) | 832 |
| MaeIII | GTNAC | 3 cut(s) | 84, 1213, 1894 |
| MfeI | CAATTG | 1 cut(s) | 1827 |
| MflI | RGATCY | 1 cut(s) | 910 |
| MhlI | GDGCHC | 1 cut(s) | 1174 |
| MluCI | AATT | 5 cut(s) | 581, 1279, 1547, 1827, 1906 |
| MlyI | GAGTC | 3 cut(s) | 1330, 1402, 1435 |
| MmeI | TCCRAC | 3 cut(s) | 100, 600, 955 |
| Mph1103I | ATGCAT | 1 cut(s) | 1265 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1128 |
| MseI | TTAA | 3 cut(s) | 372, 504, 1038 |
| MslI | CAYNNNNRTG | 1 cut(s) | 99 |
| MspA1I | CMGCKG | 4 cut(s) | 920, 992, 1577, 1903 |
| MspI | CCGG | 3 cut(s) | 17, 59, 1596 |
| MspR9I | CCNGG | 3 cut(s) | 59, 60, 753 |
| MunI | CAATTG | 1 cut(s) | 1827 |
| Mva1269I | GAATGC | 1 cut(s) | 1273 |
| MvaI | CCWGG | 1 cut(s) | 753 |
| MvnI | CGCG | 1 cut(s) | 1725 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 140, 252, 261, 264, 778, 1093, 1186, 1529, 1589 |
| NciI | CCSGG | 2 cut(s) | 59, 60 |
| NcoI | CCATGG | 1 cut(s) | 100 |
| NheI | GCTAGC | 1 cut(s) | 1480 |
| NlaIV | GGNNCC | 3 cut(s) | 55, 847, 867 |
| NmeAIII | GCCGAG | 1 cut(s) | 748 |
| NmuCI | GTSAC | 1 cut(s) | 84 |
| NsiI | ATGCAT | 1 cut(s) | 1265 |
| NspI | RCATGY | 2 cut(s) | 182, 1702 |
| NspV | TTCGAA | 2 cut(s) | 569, 1842 |
| PaeI | GCATGC | 1 cut(s) | 1702 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PciSI | GCTCTTC | 2 cut(s) | 29, 544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1060 |
| PctI | GAATGC | 1 cut(s) | 1273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1128 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1832 |
| Ple19I | CGATCG | 1 cut(s) | 1633 |
| PleI | GAGTC | 3 cut(s) | 1330, 1402, 1434 |
| PpsI | GAGTC | 3 cut(s) | 1330, 1402, 1434 |
| PscI | ACATGT | 1 cut(s) | 178 |
| Psp6I | CCWGG | 1 cut(s) | 751 |
| PspGI | CCWGG | 1 cut(s) | 751 |
| PspN4I | GGNNCC | 3 cut(s) | 55, 847, 867 |
| PstI | CTGCAG | 2 cut(s) | 910, 1302 |
| PstNI | CAGNNNCTG | 1 cut(s) | 875 |
| PsuI | RGATCY | 1 cut(s) | 910 |
| PvuI | CGATCG | 1 cut(s) | 1633 |
| PvuII | CAGCTG | 3 cut(s) | 920, 992, 1577 |
| RsaI | GTAC | 4 cut(s) | 431, 879, 1382, 1490 |
| RsaNI | GTAC | 4 cut(s) | 430, 878, 1381, 1489 |
| RseI | CAYNNNNRTG | 1 cut(s) | 99 |
| SalI | GTCGAC | 1 cut(s) | 417 |
| SapI | GCTCTTC | 2 cut(s) | 29, 544 |
| SaqAI | TTAA | 3 cut(s) | 372, 504, 1038 |
| SchI | GAGTC | 3 cut(s) | 1330, 1402, 1435 |
| ScrFI | CCNGG | 3 cut(s) | 59, 60, 753 |
| SduI | GDGCHC | 1 cut(s) | 1174 |
| SfaNI | GCATC | 1 cut(s) | 973 |
| SfcI | CTRYAG | 2 cut(s) | 906, 1298 |
| SfuI | TTCGAA | 2 cut(s) | 569, 1842 |
| SmaI | CCCGGG | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 99 |
| SmlI | CTYRAG | 2 cut(s) | 1181, 1338 |
| SmoI | CTYRAG | 2 cut(s) | 1181, 1338 |
| SphI | GCATGC | 1 cut(s) | 1702 |
| Sse9I | AATT | 5 cut(s) | 581, 1279, 1547, 1827, 1906 |
| SsiI | CCGC | 7 cut(s) | 159, 255, 282, 836, 959, 1754, 1903 |
| SspMI | CTAG | 5 cut(s) | 414, 552, 1076, 1481, 1788 |
| StyD4I | CCNGG | 3 cut(s) | 57, 58, 751 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaaI | ACNGT | 4 cut(s) | 366, 444, 877, 1839 |
| TaiI | ACGT | 1 cut(s) | 835 |
| TasI | AATT | 5 cut(s) | 581, 1279, 1547, 1827, 1906 |
| TauI | GCSGC | 3 cut(s) | 161, 258, 961 |
| Tru1I | TTAA | 3 cut(s) | 372, 504, 1038 |
| Tru9I | TTAA | 3 cut(s) | 372, 504, 1038 |
| TscAI | CASTG | 4 cut(s) | 52, 549, 793, 1302 |
| TseFI | GTSAC | 1 cut(s) | 84 |
| Tsp45I | GTSAC | 1 cut(s) | 84 |
| TspDTI | ATGAA | 8 cut(s) | 629, 701, 1248, 1508, 1560, 1653, 1683, 1811 |
| TspMI | CCCGGG | 1 cut(s) | 58 |
| TspRI | CASTG | 4 cut(s) | 52, 549, 793, 1302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1832 |
| XapI | RAATTY | 1 cut(s) | 1547 |
| XbaI | TCTAGA | 1 cut(s) | 1075 |
| XceI | RCATGY | 2 cut(s) | 182, 1702 |
| XmaI | CCCGGG | 1 cut(s) | 58 |
| XmiI | GTMKAC | 1 cut(s) | 418 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1128 |
| XspI | CTAG | 5 cut(s) | 414, 552, 1076, 1481, 1788 |
| Zsp2I | ATGCAT | 1 cut(s) | 1265 |