Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013604

Physical Location & Seq

Genomic Coordinates Reverse (-)

22882228 .. 22882791

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1108900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATATCCCAGAGAGAAGCCGAGAGTGAAACCATATTAAATAAAGAGCAAAACAGATTTCTGATCAGCAACGATGACAAAGAAGAAACTGAAGATCTTAATCGAGGAGAGTGGCTGAACCTGAGCCTAGGTAGCATTTCGGCACAAGGACAGATAGACTCACAGGCAAGACCAGCTTCCGGCAAGGTTTTCTCCTGTAACTTCTGCATGAGGAAGTTCTTCAGCTCTCAGGCATTAGGGGGTCACCAGAATGCCCACAAGAGAGAAAGAGGTGCAGCAAGAAGATACCAGTCCCAAAGACTGATGTCGATGATGGGTTTTCCCTTCACTACTTCTACGGTCAGATCACTCAGCGTTCAACCCCACTCACTCGTGCACAAGCCAAGCAGAGAAGAAACTTCACTTGTAGCAAGATTTAGTGATGCCAACGCAAGGTTTGGCACGATGCCCTTCACACTGGATGATGTAATGGATTCTATGTGGCCAGGCAGCTTCCGCTTGGATCCACAAGTATTAGAGCCACAATCAGAGCCATCCAAGCTTGACTTAAACCTTCGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.19

Weight (kDa)

6.92

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04790 FvH4_2g04790
malus_domestica	MD00G1108900.v1.1
prunus_persica	Prupe.8G137500_v2.0.a1
pyrus_communis	pycom10g08590
rosa_chinensis	RchiOBHm_Chr6g0254511 RchiOBHm_Chr6g0257541
rosa_laevigata	RLG00000014906
rosa_multiflora	Rmu_sc0009578.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210710 Rroxscaffold_7G00210750
rosa_rugosa	Rorug05G0552900
rosa_samantha	Rh6AG070000 Rh6BG062500 Rh6CG062400 Rh6DG059400 Rh6DG073000
rosa_wichuraiana	Rw6G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	497, 510
AcoI	YGGCCR	1 cut(s)	482
AcuI	CTGAAG	2 cut(s)	111, 205
AfiI	CCNNNNNNNGG	2 cut(s)	179, 432
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	4 cut(s)	176, 225, 492, 541
AluI	AGCT	4 cut(s)	176, 225, 492, 541
Alw21I	GWGCWC	1 cut(s)	378
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	497, 510
AoxI	GGCC	1 cut(s)	482
ApaLI	GTGCAC	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	275, 489
Asp700I	GAANNNNTTC	1 cut(s)	218
AspA2I	CCTAGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	236
AvrII	CCTAGG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	502
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	287, 501
BccI	CCATC	2 cut(s)	307, 541
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	276, 490
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	2 cut(s)	277, 491
Bme1390I	CCNGG	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	412, 435
BoxI	GACNNNNGTC	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 432
Bse1I	ACTGG	2 cut(s)	289, 462
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	466, 533
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	179, 432
BseMII	CTCAG	3 cut(s)	113, 242, 364
BseNI	ACTGG	2 cut(s)	289, 462
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	287, 501
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	179, 432
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	63, 94, 344, 502
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	3 cut(s)	114, 241, 363
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	497, 510
BsrI	ACTGG	2 cut(s)	289, 462
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	4 cut(s)	63, 94, 344, 502
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	122, 228, 350
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	466, 533
BstKTI	GATC	4 cut(s)	66, 97, 347, 505
BstMBI	GATC	4 cut(s)	63, 94, 344, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 173, 495, 538
BstNI	CCWGG	1 cut(s)	486
BstPAI	GACNNNNGTC	1 cut(s)	304
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	287, 501
BstX2I	RGATCY	2 cut(s)	94, 502
BstYI	RGATCY	2 cut(s)	94, 502
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	466, 533
BtsIMutI	CAGTG	1 cut(s)	455
CviAII	CATG	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	122, 228, 350
DpnI	GATC	4 cut(s)	65, 96, 346, 504
DpnII	GATC	4 cut(s)	63, 94, 344, 502
EaeI	YGGCCR	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	111, 205
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	211
FaiI	YATR	3 cut(s)	35, 209, 479
FalI	AAGNNNNNCTT	4 cut(s)	160, 192, 530, 562
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	276, 490
FokI	GGATG	2 cut(s)	473, 520
Fsp4HI	GCNGC	2 cut(s)	276, 490
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	276, 490
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	3 cut(s)	158, 473, 558
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	63, 344, 529, 563
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	334, 460, 563
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	207, 275, 376
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 173, 495, 538
HpyF3I	CTNAG	3 cut(s)	122, 228, 350
Hsp92II	CATG	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	63, 94, 344, 502
Lsp1109I	GCAGC	2 cut(s)	287, 501
LweI	GCATC	2 cut(s)	412, 435
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	197, 242
MalI	GATC	4 cut(s)	65, 96, 346, 504
MboI	GATC	4 cut(s)	63, 94, 344, 502
MboII	GAAGA	5 cut(s)	95, 104, 211, 294, 404
MflI	RGATCY	2 cut(s)	94, 502
MhlI	GDGCHC	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	484
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	2 cut(s)	152, 552
MnlI	CCTC	3 cut(s)	98, 204, 263
Mox20I	TGGCCA	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	3 cut(s)	38, 99, 548
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	484
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	132, 173, 495, 538
NdeII	GATC	4 cut(s)	63, 94, 344, 502
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	504
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	277, 491
PleI	GAGTC	2 cut(s)	152, 552
PpsI	GAGTC	2 cut(s)	152, 552
PshAI	GACNNNNGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	484
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	94, 502
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	38, 99, 548
SatI	GCNGC	2 cut(s)	276, 490
Sau3AI	GATC	4 cut(s)	63, 94, 344, 502
SchI	GAGTC	2 cut(s)	152, 552
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	412, 435
SmiMI	CAYNNNNRTG	1 cut(s)	249
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	103, 308, 556
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	38, 99, 548
Tru9I	TTAA	3 cut(s)	38, 99, 548
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	2 cut(s)	275, 489
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	462
VneI	GTGCAC	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.