Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013604

Physical Location & Seq

Genomic Coordinates Reverse (-)

74088525 .. 74088980

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0552900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTGCTTTTGATTTGGCAGAGGAGGAGTTTAGGCAAGTGCCATTGCCTGTTTTCAACCAAAATGAAGATGGCGTGCATTTGAGGCAGATAAAAATTCAGGTTCTTTTAGGTGGATGTCTTTGTGTATGGTCTCAGGATATTTATGGGCATAGTGAATTTTGGGTGATGAGAGAGTATGGTGTGCCTGAATCTTGGGTTAAACTCATTCAATTTAGTCAAGATGATTTACCAAATGAGTTCACTTCATGCAGTAGCTGGGATCCTACTTTTGTTTCAGAAGGTGGTACAATGTTGATCAAACTGCTTGACAAGAAGGAGTTGGTCTGGATTGAATGCCGTCAAGAAGAGAATCCGGTATGCAGTGCCCAATATAGAATTGAAGAGTTTCCTTGGGCGATATTTGACGGGACTCTATATGATGAAACTTTAGTTTCACTACCTGAAGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.51

Weight (kDa)

4.25

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04790 FvH4_2g04790
malus_domestica	MD00G1108900.v1.1
prunus_persica	Prupe.8G137500_v2.0.a1
pyrus_communis	pycom10g08590
rosa_chinensis	RchiOBHm_Chr6g0254511 RchiOBHm_Chr6g0257541
rosa_laevigata	RLG00000014906
rosa_multiflora	Rmu_sc0009578.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210710 Rroxscaffold_7G00210750
rosa_rugosa	Rorug05G0552900
rosa_samantha	Rh6AG070000 Rh6BG062500 Rh6CG062400 Rh6DG059400 Rh6DG073000
rosa_wichuraiana	Rw6G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	257, 270
AcsI	RAATTY	2 cut(s)	96, 158
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	58, 212, 335, 383
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	1 cut(s)	258
ApoI	RAATTY	2 cut(s)	96, 158
Asp700I	GAANNNNTTC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	262
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	38, 41
BseSI	GKGCMC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	262, 297
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	257, 270
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	262, 297
BssT1I	CCWWGG	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	342, 378
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	2 cut(s)	265, 300
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	262, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	1 cut(s)	258
CviKI_1	RGCY	1 cut(s)	258
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	2 cut(s)	264, 299
DpnII	GATC	2 cut(s)	262, 297
Eam1104I	CTCTTC	2 cut(s)	342, 378
EarI	CTCTTC	2 cut(s)	342, 378
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	1 cut(s)	252
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	297
FokI	GGATG	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	262
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	252
HinfI	GANTC	3 cut(s)	191, 352, 412
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	137, 221, 328, 344
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	275, 310, 440
HpyCH4V	TGCA	3 cut(s)	79, 252, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	262, 297
LpnPI	CCDG	7 cut(s)	63, 86, 122, 201, 244, 313, 369
MalI	GATC	2 cut(s)	264, 299
MboI	GATC	2 cut(s)	262, 297
MboII	GAAGA	3 cut(s)	80, 359, 395
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	4 cut(s)	96, 158, 212, 378
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	3 cut(s)	16, 19, 78
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	201
MspI	CCGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	2 cut(s)	262, 297
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	191, 352
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	262, 297
SchI	GAGTC	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	5 cut(s)	105, 115, 260, 286, 445
Sse9I	AATT	4 cut(s)	96, 158, 212, 378
StyI	CCWWGG	1 cut(s)	392
TasI	AATT	4 cut(s)	96, 158, 212, 378
TfiI	GAWTC	2 cut(s)	191, 352
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	370
TspDTI	ATGAA	3 cut(s)	81, 237, 438
TspRI	CASTG	1 cut(s)	370
XapI	RAATTY	2 cut(s)	96, 158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.