Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013604

Physical Location & Seq

Genomic Coordinates Forward (+)

15710919 .. 15711732

Gene Structure 814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATCTCCCAGGGAGAAGGAGAACGTGAAAGTGAACTAATATTAGATAAAGAGCAAAACAGATTTTTGATCAACAACGATAACAAAGAAGAAACTGAAGATCTTAATACAGGAGAGTGGCTGAACCTGAGCCTAGGTAGGAATTTGCTCTCAACAGAGGGAGACACAGACTCACAGTCAAGACCAGCTTCTGGCAAGGTGTTTTCCTGTAACTTCTGCATGAGGAAGTTCTTCAGTTCGCAGGCATTAGGGGGTCACCAGAACGCCCACAAGAGAGAAAGAGGTGCAGCCAGAAGATACCAGTCTCAAAGAATGATGTCAATGATGGGATTCCCGTTCACTACTTCTACGGTTAGATCACTCAGCGTTCAGCCCCACTCACTTGTGCACAAGCCAAACAGAGATGAAACTTCACTTGTAGCAAGATTCAATGATGCAAATACAAGGTTTAGCATGAGGCCTTTCACACTGGACGATGTAATGGATTCTATGTGGCCAGGCAGCTTCCGGTTGGATTCACAAGTATTAGAGCCACAATCAGAGCCATGCAAGCTTGACTTAAACCTTCGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.84

Weight (kDa)

6.11

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04790 FvH4_2g04790
malus_domestica	MD00G1108900.v1.1
prunus_persica	Prupe.8G137500_v2.0.a1
pyrus_communis	pycom10g08590
rosa_chinensis	RchiOBHm_Chr6g0254511 RchiOBHm_Chr6g0257541
rosa_laevigata	RLG00000014906
rosa_multiflora	Rmu_sc0009578.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210710 Rroxscaffold_7G00210750
rosa_rugosa	Rorug05G0552900
rosa_samantha	Rh6AG070000 Rh6BG062500 Rh6CG062400 Rh6DG059400 Rh6DG073000
rosa_wichuraiana	Rw6G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	2 cut(s)	117, 217
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	430
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	9, 496
AluBI	AGCT	3 cut(s)	188, 504, 553
AluI	AGCT	3 cut(s)	188, 504, 553
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	156, 309
Alw44I	GTGCAC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	458, 494
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	287, 501
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	230
AspA2I	CCTAGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	299, 513
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	11, 498
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	156, 309
BfaI	CTAG	1 cut(s)	134
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	2 cut(s)	288, 502
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	2 cut(s)	289, 503
Bme1390I	CCNGG	2 cut(s)	11, 498
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	11, 498
BmsI	GCATC	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	9, 10, 133
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	301, 474
BseBI	CCWGG	2 cut(s)	11, 498
BseDI	CCNNGG	3 cut(s)	9, 10, 133
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	119, 376
BseNI	ACTGG	2 cut(s)	301, 474
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	299, 513
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	460, 496
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	156, 309
BsnI	GGCC	2 cut(s)	460, 496
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	3, 69, 100, 356
BspANI	GGCC	2 cut(s)	460, 496
BspCNI	CTCAG	2 cut(s)	120, 375
BsrI	ACTGG	2 cut(s)	301, 474
BssECI	CCNNGG	3 cut(s)	9, 10, 133
BssMI	GATC	4 cut(s)	3, 69, 100, 356
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	11, 498
Bst4CI	ACNGT	2 cut(s)	177, 352
BstC8I	GCNNGC	2 cut(s)	243, 551
BstDEI	CTNAG	2 cut(s)	128, 362
BstEII	GGTNACC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	6, 72, 103, 359
BstMAI	GTCTC	2 cut(s)	156, 309
BstMBI	GATC	4 cut(s)	3, 69, 100, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNI	CCWGG	2 cut(s)	11, 498
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	9, 496
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	299, 513
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	460, 496
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	243, 551
CaiI	CAGNNNCTG	1 cut(s)	191
CviAII	CATG	3 cut(s)	220, 454, 546
DdeI	CTNAG	2 cut(s)	128, 362
DpnI	GATC	4 cut(s)	5, 71, 102, 358
DpnII	GATC	4 cut(s)	3, 69, 100, 356
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	494
Eam1105I	GACNNNNNGTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	117, 217
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	9, 496
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	223, 457, 549
FaiI	YATR	4 cut(s)	221, 455, 491, 547
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 542, 574
FatI	CATG	3 cut(s)	219, 453, 545
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	288, 502
Fsp4HI	GCNGC	2 cut(s)	288, 502
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	288, 502
HaeIII	GGCC	2 cut(s)	460, 496
HapII	CCGG	1 cut(s)	508
Hin1II	CATG	3 cut(s)	223, 457, 549
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	5 cut(s)	170, 330, 426, 485, 515
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	3 cut(s)	35, 339, 388
Hpy188I	TCNGA	2 cut(s)	541, 575
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	3 cut(s)	35, 339, 388
HpyAV	CCTTC	2 cut(s)	11, 575
HpyCH4III	ACNGT	2 cut(s)	177, 352
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	219, 287, 388, 437, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	2 cut(s)	128, 362
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	223, 457, 549
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	3, 69, 100, 356
Lsp1109I	GCAGC	2 cut(s)	299, 513
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	209, 254
MalI	GATC	4 cut(s)	5, 71, 102, 358
MboI	GATC	4 cut(s)	3, 69, 100, 356
MboII	GAAGA	4 cut(s)	101, 110, 223, 306
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	4 cut(s)	151, 216, 275, 450
Mox20I	TGGCCA	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	2 cut(s)	105, 560
Msp20I	TGGCCA	1 cut(s)	496
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	11, 498
MvaI	CCWGG	2 cut(s)	11, 498
MwoI	GCNNNNNNNGC	1 cut(s)	550
NdeII	GATC	4 cut(s)	3, 69, 100, 356
NlaIII	CATG	3 cut(s)	223, 457, 549
NmuCI	GTSAC	1 cut(s)	254
PasI	CCCWGGG	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	4 cut(s)	330, 426, 485, 515
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	289, 503
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	9, 496
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	9, 496
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	105, 560
SatI	GCNGC	2 cut(s)	288, 502
Sau3AI	GATC	4 cut(s)	3, 69, 100, 356
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	11, 498
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	1 cut(s)	424
Sse9I	AATT	1 cut(s)	142
SseBI	AGGCCT	1 cut(s)	460
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	134
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	9, 496
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	177, 352
TaiI	ACGT	1 cut(s)	28
TasI	AATT	1 cut(s)	142
TfiI	GAWTC	4 cut(s)	330, 426, 485, 515
Tru1I	TTAA	2 cut(s)	105, 560
Tru9I	TTAA	2 cut(s)	105, 560
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	287, 501
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	474
Van91I	CCANNNNNTGG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	142
XmaJI	CCTAGG	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.