Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013604

Physical Location & Seq

Genomic Coordinates Reverse (-)

9759290 .. 9760444

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATCTCCCACGGAGAAGCAGAAAGCGAGATAGTACTAGGGAAAGAGCAAAACAGATATGCAAACAGCGATGATAACAATGAAGAAACAGAAGATCTTAATCAAGGAGAGTGGCTGAACCTGAGCCTAGGTGGGAATTTGCTCTCAACAGAAGGAGACACTGACTCGCAGTCAAGACCAGCTACGGGCAAGGTTTTCTCCTGTAACTTCTGCATGAGGAAGTTCTTCAGCTCCCAGGCATTAGGAGGTCACCAGAACGCCCACAAGAGAGAGAGAGGTGCAGCTAGAAGATATCAATCTCAAAGAATGATGTCCATGATGGGCTTTCCCTTCAATACTTCAACGCTTCGATCGCTCAACGTTCAGCCCCATTCACTTGTGCACAAGCCAAGCAGATATGAAACTGCACTTGTAGCAAGATTTAATGATGCCAAGACAAGGTTTAGCATGATGCCTTTCACACTTGACGATGTAATGGATTCGATGTGGCCGGGCAGCTTCCGCTTGGATCCACTAGTATTAGAGCCACAATCAGAGCCATGCAAGCTCGATTTAAATCTTCGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

5.96

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04790 FvH4_2g04790
malus_domestica	MD00G1108900.v1.1
prunus_persica	Prupe.8G137500_v2.0.a1
pyrus_communis	pycom10g08590
rosa_chinensis	RchiOBHm_Chr6g0254511 RchiOBHm_Chr6g0257541
rosa_laevigata	RLG00000014906
rosa_multiflora	Rmu_sc0009578.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210710 Rroxscaffold_7G00210750
rosa_rugosa	Rorug05G0552900
rosa_samantha	Rh6AG070000 Rh6BG062500 Rh6CG062400 Rh6DG059400 Rh6DG073000
rosa_wichuraiana	Rw6G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	502
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	2 cut(s)	503, 516
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	211
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	185, 438
AgsI	TTSAA	2 cut(s)	334, 342
AhdI	GACNNNNNGTC	1 cut(s)	169
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	5 cut(s)	182, 231, 284, 498, 547
AluI	AGCT	5 cut(s)	182, 231, 284, 498, 547
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	503, 516
AoxI	GGCC	1 cut(s)	488
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	281, 495
ApoI	RAATTY	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	242
AvrII	CCTAGG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	293, 507
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	4 cut(s)	38, 128, 285, 515
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	282, 496
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	2 cut(s)	283, 497
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	236, 492
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	2 cut(s)	236, 492
BmsI	GCATC	2 cut(s)	418, 441
Bpu10I	CCTNAGC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	492
BsaBI	GATNNNNATC	3 cut(s)	99, 295, 555
BsaJI	CCNNGG	3 cut(s)	10, 127, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 438
Bse8I	GATNNNNATC	3 cut(s)	99, 295, 555
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	10, 127, 234
BseJI	GATNNNNATC	3 cut(s)	99, 295, 555
BseLI	CCNNNNNNNGG	2 cut(s)	185, 438
BseMII	CTCAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	293, 507
BsgI	GTGCAG	2 cut(s)	300, 390
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	185, 438
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	3, 94, 350, 508
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	503, 516
BssECI	CCNNGG	3 cut(s)	10, 127, 234
BssMI	GATC	4 cut(s)	3, 94, 350, 508
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	10
BstEII	GGTNACC	1 cut(s)	248
BstKTI	GATC	4 cut(s)	6, 97, 353, 511
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	3, 94, 350, 508
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 413, 501, 544
BstNI	CCWGG	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	234, 490
BstSLI	GKGCMC	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	293, 507
BstX2I	RGATCY	2 cut(s)	94, 508
BstYI	RGATCY	2 cut(s)	94, 508
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	35
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviAII	CATG	4 cut(s)	214, 316, 448, 540
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	4 cut(s)	5, 96, 352, 510
DpnII	GATC	4 cut(s)	3, 94, 350, 508
DraI	TTTAAA	1 cut(s)	555
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	488
Eam1105I	GACNNNNNGTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	217, 319, 451, 543
FaiI	YATR	6 cut(s)	60, 215, 317, 399, 449, 541
FatI	CATG	4 cut(s)	213, 315, 447, 539
Fnu4HI	GCNGC	2 cut(s)	282, 496
Fsp4HI	GCNGC	2 cut(s)	282, 496
FspBI	CTAG	4 cut(s)	38, 128, 285, 515
GluI	GCNGC	2 cut(s)	282, 496
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	491
Hin1II	CATG	4 cut(s)	217, 319, 451, 543
HinfI	GANTC	2 cut(s)	164, 479
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	146, 340
HpyCH4III	ACNGT	1 cut(s)	567
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	62, 213, 281, 382, 407, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 413, 501, 544
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	217, 319, 451, 543
Kzo9I	GATC	4 cut(s)	3, 94, 350, 508
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	134, 192, 214, 221, 248, 266, 504
Lsp1109I	GCAGC	2 cut(s)	293, 507
LweI	GCATC	2 cut(s)	418, 441
MaeI	CTAG	4 cut(s)	38, 128, 285, 515
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	203, 248
MalI	GATC	4 cut(s)	5, 96, 352, 510
MboI	GATC	4 cut(s)	3, 94, 350, 508
MboII	GAAGA	5 cut(s)	95, 104, 217, 300, 551
MflI	RGATCY	2 cut(s)	94, 508
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	210, 239, 269
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	3 cut(s)	99, 423, 554
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	236, 492
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	352, 413, 501, 544
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	4 cut(s)	3, 94, 350, 508
NlaIII	CATG	4 cut(s)	217, 319, 451, 543
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	283, 497
Ple19I	CGATCG	1 cut(s)	353
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	94, 508
PvuI	CGATCG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	99, 423, 554
SatI	GCNGC	2 cut(s)	282, 496
Sau3AI	GATC	4 cut(s)	3, 94, 350, 508
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	236, 492
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	418, 441
SmiI	ATTTAAAT	1 cut(s)	555
SpeI	ACTAGT	1 cut(s)	514
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	4 cut(s)	38, 128, 285, 515
StyD4I	CCNGG	2 cut(s)	234, 490
StyI	CCWWGG	1 cut(s)	127
SwaI	ATTTAAAT	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	567
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	349, 482, 549, 562
TasI	AATT	1 cut(s)	136
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	99, 423, 554
Tru9I	TTAA	3 cut(s)	99, 423, 554
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	281, 495
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	96, 414
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	136
XmaJI	CCTAGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	4 cut(s)	38, 128, 285, 515
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.