Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013604

Physical Location & Seq

Genomic Coordinates Forward (+)

61214886 .. 61215473

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATCTCCCACGGAGAAGCAGAAAGCGAGATAGTACTAGGGAAAGAGCAAAACAGATATTCAAACAGCGATGATAACAACGAAGAAACAGAAGATCTTAATCAACGAGAGTGGCTAAACCTAAGCCTATATAGGTGGGAATTTGCTCTCAATAGAAGGAGACACCGACTCACGGTCAAGACCAGCTTCAGGCAAGGAAGTTCTACAGCTCCCAGGCATTGGGAGGTCACCAGAATGCCCACAAGAGAGAGAGAGAGAGAGAGAGGTGCAGCTAGAAGATATCAATCTCAAAGAATGATGTCAATGATGGGTTTTCCCTTCAATACTTCAACACTTCGATCGCTCAACGTACAGCTCCATTCACTTGTGCACAAGCCAAGTAGATACGAAACTGCACTTGTAGCAAGATTTGATGATGCCAGTACAAGGTTTAGCATGATGCCTTTCACACTTGACGACGTAATGGATTCAATGTGGCCAGGCAGCTTCCGCTTGGATCCACAAGTATTAGAGCCACAATCAGAGCCATGCAACCTCGACTTAAATCTTCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.86

Weight (kDa)

6.53

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04790 FvH4_2g04790
malus_domestica	MD00G1108900.v1.1
prunus_persica	Prupe.8G137500_v2.0.a1
pyrus_communis	pycom10g08590
rosa_chinensis	RchiOBHm_Chr6g0254511 RchiOBHm_Chr6g0257541
rosa_laevigata	RLG00000014906
rosa_multiflora	Rmu_sc0009578.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210710 Rroxscaffold_7G00210750
rosa_rugosa	Rorug05G0552900
rosa_samantha	Rh6AG070000 Rh6BG062500 Rh6CG062400 Rh6DG059400 Rh6DG073000
rosa_wichuraiana	Rw6G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	2 cut(s)	491, 504
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	3 cut(s)	36, 351, 424
AfiI	CCNNNNNNNGG	4 cut(s)	172, 189, 219, 426
AgsI	TTSAA	5 cut(s)	63, 322, 330, 471, 551
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	212, 478
AluBI	AGCT	5 cut(s)	186, 209, 272, 355, 486
AluI	AGCT	5 cut(s)	186, 209, 272, 355, 486
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	491, 504
AoxI	GGCC	1 cut(s)	476
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	269, 483
ApoI	RAATTY	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	478
BamHI	GGATCC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	281, 495
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	214, 480
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	38, 273
BfmI	CTRYAG	1 cut(s)	204
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	270, 484
BlsI	GCNGC	2 cut(s)	271, 485
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	214, 480
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	2 cut(s)	214, 480
BmsI	GCATC	2 cut(s)	406, 429
Bpu10I	CCTNAGC	1 cut(s)	122
BsaBI	GATNNNNATC	2 cut(s)	99, 283
BsaJI	CCNNGG	2 cut(s)	10, 212
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 189, 219, 426
Bse1I	ACTGG	1 cut(s)	420
Bse8I	GATNNNNATC	2 cut(s)	99, 283
BseBI	CCWGG	2 cut(s)	214, 480
BseDI	CCNNGG	2 cut(s)	10, 212
BseJI	GATNNNNATC	2 cut(s)	99, 283
BseLI	CCNNNNNNNGG	4 cut(s)	172, 189, 219, 426
BseNI	ACTGG	1 cut(s)	420
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	281, 495
BsgI	GTGCAG	2 cut(s)	288, 378
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	4 cut(s)	172, 189, 219, 426
BsmAI	GTCTC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	4 cut(s)	3, 94, 338, 496
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	491, 504
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	10, 212
BssMI	GATC	4 cut(s)	3, 94, 338, 496
Bst2UI	CCWGG	2 cut(s)	214, 480
Bst4CI	ACNGT	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	10
BstEII	GGTNACC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	6, 97, 341, 499
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	4 cut(s)	3, 94, 338, 496
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 489
BstNI	CCWGG	2 cut(s)	214, 480
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	212, 478
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	281, 495
BstX2I	RGATCY	2 cut(s)	94, 496
BstYI	RGATCY	2 cut(s)	94, 496
BsuRI	GGCC	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	35, 350, 423
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviAII	CATG	2 cut(s)	436, 528
CviQI	GTAC	3 cut(s)	35, 350, 423
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	4 cut(s)	5, 96, 340, 498
DpnII	GATC	4 cut(s)	3, 94, 338, 496
DriI	GACNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	476
Eam1105I	GACNNNNNGTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	212, 478
EcoRV	GATATC	1 cut(s)	281
FaeI	CATG	2 cut(s)	439, 531
FaiI	YATR	4 cut(s)	130, 132, 437, 529
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	2 cut(s)	435, 527
Fnu4HI	GCNGC	2 cut(s)	270, 484
Fsp4HI	GCNGC	2 cut(s)	270, 484
FspBI	CTAG	2 cut(s)	38, 273
GluI	GCNGC	2 cut(s)	270, 484
HaeIII	GGCC	1 cut(s)	478
Hin1II	CATG	2 cut(s)	439, 531
HinfI	GANTC	2 cut(s)	168, 467
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	523, 557
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	150, 328
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	348, 459
HpyCH4V	TGCA	4 cut(s)	269, 370, 395, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 489
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	2 cut(s)	348, 459
Hsp92II	CATG	2 cut(s)	439, 531
Kzo9I	GATC	4 cut(s)	3, 94, 338, 496
LmnI	GCTCC	2 cut(s)	214, 360
LpnPI	CCDG	8 cut(s)	175, 196, 199, 226, 244, 433, 465, 492
Lsp1109I	GCAGC	2 cut(s)	281, 495
LweI	GCATC	2 cut(s)	406, 429
MaeI	CTAG	2 cut(s)	38, 273
MaeII	ACGT	2 cut(s)	348, 459
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	5, 96, 340, 498
MboI	GATC	4 cut(s)	3, 94, 338, 496
MboII	GAAGA	4 cut(s)	95, 104, 288, 539
MflI	RGATCY	2 cut(s)	94, 496
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	217, 257, 545
Mox20I	TGGCCA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	2 cut(s)	99, 542
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	478
MspR9I	CCNGG	2 cut(s)	214, 480
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	214, 480
MwoI	GCNNNNNNNGC	2 cut(s)	401, 489
NdeII	GATC	4 cut(s)	3, 94, 338, 496
NlaIII	CATG	2 cut(s)	439, 531
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	271, 485
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	212, 478
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	2 cut(s)	212, 478
PspN4I	GGNNCC	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	94, 496
PvuI	CGATCG	1 cut(s)	341
RsaI	GTAC	3 cut(s)	36, 351, 424
RsaNI	GTAC	3 cut(s)	35, 350, 423
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	99, 542
SatI	GCNGC	2 cut(s)	270, 484
Sau3AI	GATC	4 cut(s)	3, 94, 338, 496
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	214, 480
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	2 cut(s)	406, 429
SfcI	CTRYAG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	38, 273
StyD4I	CCNGG	2 cut(s)	212, 478
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	351, 462
TaqI	TCGA	2 cut(s)	337, 537
TasI	AATT	1 cut(s)	140
TatI	WGTACW	2 cut(s)	34, 422
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	99, 542
Tru9I	TTAA	2 cut(s)	99, 542
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	269, 483
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	219
VneI	GTGCAC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	140
XspI	CTAG	2 cut(s)	38, 273
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.