Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013604

Physical Location & Seq

Genomic Coordinates Forward (+)

8016071 .. 8016388

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG073000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCCCACAAGAGAGACAGAGAGAGCTGCAGCTAGAAGATATCAATCTCAAAGAATGATGTCAATGAAGGGTTTTCCCTTCAATATTTCAACACTTCAATCGCTCAACGTACAGCCCCATTCACTTGTACACAAGCCAAGCAGATACGAAACTGCACTTGTAGCAAGATTTAATGATGCCAGTACAAGGTATAGCATGATGCCTTTCACACTTGACGACGTAATGCATTTAATGTGGCCAGGCAGCTTCCGCTTGGATCCACAAGTATTAGAGCCACAATCAGAGCCATGCAACCTCGACTTAAATCTTCAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.2

Weight (kDa)

7.96

Isoelectric Point (pI)

76.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04790 FvH4_2g04790
malus_domestica	MD00G1108900.v1.1
prunus_persica	Prupe.8G137500_v2.0.a1
pyrus_communis	pycom10g08590
rosa_chinensis	RchiOBHm_Chr6g0254511 RchiOBHm_Chr6g0257541
rosa_laevigata	RLG00000014906
rosa_multiflora	Rmu_sc0009578.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210710 Rroxscaffold_7G00210750
rosa_rugosa	Rorug05G0552900
rosa_samantha	Rh6AG070000 Rh6BG062500 Rh6CG062400 Rh6DG059400 Rh6DG073000
rosa_wichuraiana	Rw6G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	251, 264
AcoI	YGGCCR	1 cut(s)	236
AfaI	GTAC	3 cut(s)	111, 129, 184
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	82, 90, 98, 311
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	26, 32, 246
AluI	AGCT	3 cut(s)	26, 32, 246
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	251, 264
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	26, 29, 243
BalI	TGGCCA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	13, 41, 255
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	27, 30, 244
BlsI	GCNGC	3 cut(s)	28, 31, 245
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	166, 189
BsaBI	GATNNNNATC	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	13, 41, 255
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	251, 264
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	127
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 249
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	13, 41, 255
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	110, 128, 183
CviAII	CATG	2 cut(s)	196, 288
CviJI	RGCY	8 cut(s)	26, 32, 115, 136, 238, 246, 274, 286
CviKI_1	RGCY	8 cut(s)	26, 32, 115, 136, 238, 246, 274, 286
CviQI	GTAC	3 cut(s)	110, 128, 183
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	228
FaeI	CATG	2 cut(s)	199, 291
FaiI	YATR	3 cut(s)	192, 197, 289
FatI	CATG	2 cut(s)	195, 287
Fnu4HI	GCNGC	3 cut(s)	27, 30, 244
Fsp4HI	GCNGC	3 cut(s)	27, 30, 244
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	3 cut(s)	27, 30, 244
HaeIII	GGCC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	199, 291
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	283, 317
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	61, 88
HpyCH4IV	ACGT	2 cut(s)	108, 219
HpyCH4V	TGCA	4 cut(s)	29, 155, 226, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 249
HpySE526I	ACGT	2 cut(s)	108, 219
Hsp92II	CATG	2 cut(s)	199, 291
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	193, 225, 252
Lsp1109I	GCAGC	3 cut(s)	13, 41, 255
LweI	GCATC	2 cut(s)	166, 189
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	108, 219
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	48, 299
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	238
MnlI	CCTC	1 cut(s)	305
Mox20I	TGGCCA	1 cut(s)	238
Mph1103I	ATGCAT	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	3 cut(s)	171, 230, 302
Msp20I	TGGCCA	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	161, 249
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	199, 291
NlaIV	GGNNCC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	28, 31, 245
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	3 cut(s)	111, 129, 184
RsaNI	GTAC	3 cut(s)	110, 128, 183
SaqAI	TTAA	3 cut(s)	171, 230, 302
SatI	GCNGC	3 cut(s)	27, 30, 244
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	7 cut(s)	28, 34, 111, 191, 222, 248, 297
SfaNI	GCATC	2 cut(s)	166, 189
SfcI	CTRYAG	1 cut(s)	27
SsiI	CCGC	1 cut(s)	250
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	238
TaiI	ACGT	2 cut(s)	111, 222
TaqI	TCGA	1 cut(s)	297
TatI	WGTACW	2 cut(s)	127, 182
Tru1I	TTAA	3 cut(s)	171, 230, 302
Tru9I	TTAA	3 cut(s)	171, 230, 302
TseI	GCWGC	3 cut(s)	26, 29, 243
TspDTI	ATGAA	1 cut(s)	80
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.