Bacterial RNA polymerase, alpha chain C terminal domain
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1006600.v1.1 |
| rosa_chinensis | RchiOBHm_Chr5g0031171 |
| rosa_laevigata | RLG00000033288 |
| rosa_multiflora | Rmu_sc0011257.1_g000004 Rmu_sc0027814.1_g000001 Rmu_sc0038845.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00049090 |
| rosa_samantha | Rh5AG216400 Rh5BG215700 Rh5CG239200 Rh5CG239300 Rh5DG220600 |
| rosa_wichuraiana | Rw5G019780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 91 |
| AjnI | CCWGG | 1 cut(s) | 86 |
| ApoI | RAATTY | 1 cut(s) | 91 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 72 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 123, 155 |
| BciT130I | CCWGG | 1 cut(s) | 88 |
| Bme1390I | CCNGG | 1 cut(s) | 88 |
| BmrFI | CCNGG | 1 cut(s) | 88 |
| BseBI | CCWGG | 1 cut(s) | 88 |
| BspHI | TCATGA | 2 cut(s) | 76, 190 |
| Bst2UI | CCWGG | 1 cut(s) | 88 |
| BstNI | CCWGG | 1 cut(s) | 88 |
| BstNSI | RCATGY | 1 cut(s) | 125 |
| BstSCI | CCNGG | 1 cut(s) | 86 |
| CciI | TCATGA | 2 cut(s) | 76, 190 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 167, 202 |
| CviAII | CATG | 3 cut(s) | 77, 122, 191 |
| CviJI | RGCY | 2 cut(s) | 83, 203 |
| CviKI_1 | RGCY | 2 cut(s) | 83, 203 |
| DraI | TTTAAA | 1 cut(s) | 238 |
| EcoRII | CCWGG | 1 cut(s) | 86 |
| FaeI | CATG | 3 cut(s) | 80, 125, 194 |
| FaiI | YATR | 5 cut(s) | 40, 78, 123, 192, 243 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 8, 40, 57, 89 |
| FatI | CATG | 3 cut(s) | 76, 121, 190 |
| Hin1II | CATG | 3 cut(s) | 80, 125, 194 |
| HinfI | GANTC | 1 cut(s) | 100 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 191 |
| HpyCH4V | TGCA | 2 cut(s) | 125, 162 |
| Hsp92II | CATG | 3 cut(s) | 80, 125, 194 |
| LpnPI | CCDG | 2 cut(s) | 73, 100 |
| MboII | GAAGA | 1 cut(s) | 143 |
| MluCI | AATT | 1 cut(s) | 91 |
| MnlI | CCTC | 1 cut(s) | 94 |
| MroXI | GAANNNNTTC | 1 cut(s) | 72 |
| MseI | TTAA | 3 cut(s) | 33, 56, 237 |
| MspR9I | CCNGG | 1 cut(s) | 88 |
| MvaI | CCWGG | 1 cut(s) | 88 |
| NlaIII | CATG | 3 cut(s) | 80, 125, 194 |
| NspI | RCATGY | 1 cut(s) | 125 |
| PagI | TCATGA | 2 cut(s) | 76, 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 72 |
| PfeI | GAWTC | 1 cut(s) | 100 |
| PfoI | TCCNGGA | 1 cut(s) | 86 |
| Psp6I | CCWGG | 1 cut(s) | 86 |
| PspGI | CCWGG | 1 cut(s) | 86 |
| SaqAI | TTAA | 3 cut(s) | 33, 56, 237 |
| ScrFI | CCNGG | 1 cut(s) | 88 |
| SgeI | CNNG | 7 cut(s) | 28, 89, 99, 100, 134, 198, 203 |
| SmiI | ATTTAAAT | 1 cut(s) | 238 |
| Sse9I | AATT | 1 cut(s) | 91 |
| StyD4I | CCNGG | 1 cut(s) | 86 |
| SwaI | ATTTAAAT | 1 cut(s) | 238 |
| TasI | AATT | 1 cut(s) | 91 |
| TfiI | GAWTC | 1 cut(s) | 100 |
| Tru1I | TTAA | 3 cut(s) | 33, 56, 237 |
| Tru9I | TTAA | 3 cut(s) | 33, 56, 237 |
| TspDTI | ATGAA | 3 cut(s) | 65, 93, 113 |
| XapI | RAATTY | 1 cut(s) | 91 |
| XceI | RCATGY | 1 cut(s) | 125 |
| XmnI | GAANNNNTTC | 1 cut(s) | 72 |