Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017060

Physical Location & Seq

Genomic Coordinates Reverse (-)

25790279 .. 25792741

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTCCACGCCTCTTCTTCTATCACCACTAACTCAGAGGTGCCTGCTTTGCTTGGCCGTATCCCATGTACTGTTCGATACCAAGCTACTGCAGCTACTTATCTTGGAGGACTTAGAACAACCTACAAGCGTTCCATCTCTTCTGCCCAAGCTATTCATGTGCCTTCTGTCCAACAGACCCTTGCCACTAGAACTAAGGTTGTTGACTTTCTTGCACCATACCAAAGAGGAGGAAATATTGGGTTGTTTGGTGGGGTTGGTGTAGGGAAAAACTATGCTTACTATTCAGCTCAACCTGGTGGCAAAAGTGGAGGATTCAAAAAACAGTGCAAGGGAAGAATGAAAGGACTATCTTGCCGAGGTAATCGTATCAGCTTTGGTAAATATGGTCTTCAAGCGCTTGAACCTGCTTGGATCACAGCTAGACAAATAGAAGCAGGGCGGAGAGCAATGTCACGAAATGCACGTGGTGGAGGGAAAATATGGGTACGAGTAATTTCAGACAAACCAGTTACAGCAAAGCCTACAGAAGTACGTATGGGCAAGGGGAAAGGAGCTGTCTCGCATATGGTGGCTGTTGTTTTACCGGGCAGAATACTTTATGAAGTGAGCGGAGTAGCAGAAAATGTAGCCAGAAGGGCTATTACTATAGCTGGATCCAAAATGCCTATAAAAACTAAATTTGTTGTCTCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

232

Amino Acids

24.7

Weight (kDa)

10.85

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L16	PF00252	106 - 229	8e-43	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017060)

Species	Orthologous Gene IDs
malus_domestica	MD01G1006600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0031171
rosa_laevigata	RLG00000033288
rosa_multiflora	Rmu_sc0011257.1_g000004 Rmu_sc0027814.1_g000001 Rmu_sc0038845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049090
rosa_samantha	Rh5AG216400 Rh5BG215700 Rh5CG239200 Rh5CG239300 Rh5DG220600
rosa_wichuraiana	Rw5G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	612
AciI	CCGC	2 cut(s)	442, 612
AclWI	GGATC	3 cut(s)	422, 651, 664
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	680
AcvI	CACGTG	1 cut(s)	467
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	70, 489, 534
AfeI	AGCGCT	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	319, 395, 404
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	8 cut(s)	86, 95, 152, 290, 375, 422, 557, 653
AluI	AGCT	8 cut(s)	86, 95, 152, 290, 375, 422, 557, 653
Alw26I	GTCTC	2 cut(s)	565, 694
AlwI	GGATC	3 cut(s)	422, 651, 664
Aor51HI	AGCGCT	1 cut(s)	399
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	628, 660
BbrPI	CACGTG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	2 cut(s)	565, 694
BfaI	CTAG	2 cut(s)	189, 423
BfmI	CTRYAG	3 cut(s)	90, 525, 648
BfoI	RGCGCY	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	638
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	2 cut(s)	297, 588
BmiI	GGNNCC	2 cut(s)	42, 658
BmrFI	CCNGG	2 cut(s)	297, 588
BpiI	GAAGAC	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	588
BsaAI	YACGTR	2 cut(s)	467, 536
BsaJI	CCNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	565, 694
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	414, 656
BspACI	CCGC	2 cut(s)	442, 612
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	42, 658
BspMAI	CTGCAG	1 cut(s)	94
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	3 cut(s)	422, 651, 664
BspT107I	GGYRCC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	2 cut(s)	414, 656
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	73, 327
Bst6I	CTCTTC	2 cut(s)	19, 145
BstBAI	YACGTR	2 cut(s)	467, 536
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	34, 113, 195, 691
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	2 cut(s)	417, 659
BstMAI	GTCTC	2 cut(s)	565, 694
BstMBI	GATC	2 cut(s)	414, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 92, 638
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	295, 586
BstSFI	CTRYAG	3 cut(s)	90, 525, 648
BstSNI	TACGTA	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	332
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	69, 488, 533
CviAII	CATG	2 cut(s)	66, 158
CviQI	GTAC	3 cut(s)	69, 488, 533
DdeI	CTNAG	4 cut(s)	34, 113, 195, 691
DpnI	GATC	2 cut(s)	416, 658
DpnII	GATC	2 cut(s)	414, 656
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	19, 145
EarI	CTCTTC	2 cut(s)	19, 145
EciI	GGCGGA	1 cut(s)	457
Eco105I	TACGTA	1 cut(s)	536
Eco47III	AGCGCT	1 cut(s)	399
Eco72I	CACGTG	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	69, 161
FatI	CATG	2 cut(s)	65, 157
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	189, 423
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	69, 161
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	37, 502
Hpy188III	TCNNGA	1 cut(s)	456
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	174, 630
HpyCH4III	ACNGT	2 cut(s)	73, 327
HpyCH4IV	ACGT	2 cut(s)	466, 535
HpyCH4V	TGCA	4 cut(s)	92, 215, 330, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 92, 638
HpyF3I	CTNAG	4 cut(s)	34, 113, 195, 691
HpySE526I	ACGT	2 cut(s)	466, 535
Hsp92II	CATG	2 cut(s)	69, 161
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	414, 656
LmnI	GCTCC	2 cut(s)	9, 554
Lsp1109I	GCAGC	1 cut(s)	104
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	189, 423
MaeII	ACGT	2 cut(s)	466, 535
MaeIII	GTNAC	2 cut(s)	453, 511
MalI	GATC	2 cut(s)	416, 658
MbiI	CCGCTC	1 cut(s)	612
MboI	GATC	2 cut(s)	414, 656
MboII	GAAGA	5 cut(s)	6, 9, 132, 348, 383
MflI	RGATCY	1 cut(s)	656
MluCI	AATT	2 cut(s)	495, 680
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	8 cut(s)	22, 31, 101, 221, 224, 305, 353, 467
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	297, 588
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	49, 92, 638
NciI	CCSGG	1 cut(s)	588
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	2 cut(s)	414, 656
NlaIII	CATG	2 cut(s)	69, 161
NlaIV	GGNNCC	2 cut(s)	42, 658
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	467
PmlI	CACGTG	1 cut(s)	467
Ppu21I	YACGTR	2 cut(s)	467, 536
Psp6I	CCWGG	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	42, 658
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	656
RsaI	GTAC	3 cut(s)	70, 489, 534
RsaNI	GTAC	3 cut(s)	69, 488, 533
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	414, 656
ScrFI	CCNGG	2 cut(s)	297, 588
SexAI	ACCWGGT	1 cut(s)	295
SfcI	CTRYAG	3 cut(s)	90, 525, 648
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	2 cut(s)	495, 680
SsiI	CCGC	2 cut(s)	442, 612
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	2 cut(s)	189, 423
StyD4I	CCNGG	2 cut(s)	295, 586
TaaI	ACNGT	2 cut(s)	73, 327
TaiI	ACGT	2 cut(s)	469, 538
TaqI	TCGA	1 cut(s)	76
TasI	AATT	2 cut(s)	495, 680
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	146, 356, 618
TspRI	CASTG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	680
XspI	CTAG	2 cut(s)	189, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.