Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038845.1

Orthogroup ID

OG0017060

Physical Location & Seq

Genomic Coordinates Forward (+)

1518 .. 2941

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggcttcgcgtcggctcttatcccctcttctccgatccccttccagattttcgatctcaaaccacaaccctaccctatcaaccccctcgcaatcgcctccccgcgcttcaccgtacgcccacctcctccggaatgctcttcttaccggccgccgcatgctccacacctcttcttctatcaccactaactcagaggtgcctgctttgcttggccgtagcccatctactgttcgatgccaagctactgcagctacttatcttggaggacttagaacaacctacaagcgttccatctcttctgcccaagctactcatgtgccttctgtccaacagacccttgctactagaactaaggtcttattattatcctttcaaatgttcatttttaatagcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

132

Amino Acids

14.41

Weight (kDa)

12.0

Isoelectric Point (pI)

80.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017060)

Species	Orthologous Gene IDs
malus_domestica	MD01G1006600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0031171
rosa_laevigata	RLG00000033288
rosa_multiflora	Rmu_sc0011257.1_g000004 Rmu_sc0027814.1_g000001 Rmu_sc0038845.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049090
rosa_samantha	Rh5AG216400 Rh5BG215700 Rh5CG239200 Rh5CG239300 Rh5DG220600
rosa_wichuraiana	Rw5G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	2 cut(s)	10, 105
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	3 cut(s)	103, 151, 154
AclWI	GGATC	1 cut(s)	30
AcoI	YGGCCR	2 cut(s)	148, 211
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	3 cut(s)	242, 251, 308
AluI	AGCT	3 cut(s)	242, 251, 308
AlwI	GGATC	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	129
AoxI	GGCC	2 cut(s)	148, 211
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	102, 172
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	229, 299
BceAI	ACGGC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	3 cut(s)	151, 154, 249
BlsI	GCNGC	3 cut(s)	152, 155, 250
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	10, 105
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	150, 213
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	130, 147
BsiWI	CGTACG	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	150, 213
Bsp13I	TCCGGA	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	35, 54
BspACI	CCGC	3 cut(s)	103, 151, 154
BspANI	GGCC	2 cut(s)	150, 213
BspCNI	CTCAG	1 cut(s)	203
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	2 cut(s)	10, 105
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	2 cut(s)	35, 54
Bst4CI	ACNGT	2 cut(s)	114, 229
Bst6I	CTCTTC	4 cut(s)	33, 144, 175, 301
BstC8I	GCNNGC	2 cut(s)	158, 201
BstDEI	CTNAG	3 cut(s)	190, 269, 351
BstFNI	CGCG	2 cut(s)	10, 105
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	38, 57
BstMBI	GATC	2 cut(s)	35, 54
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 248
BstNSI	RCATGY	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	2 cut(s)	10, 105
BstV1I	GCAGC	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	150, 213
Cac8I	GCNNGC	2 cut(s)	158, 201
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	157, 314
CviJI	RGCY	8 cut(s)	5, 16, 150, 213, 219, 242, 251, 308
CviKI_1	RGCY	8 cut(s)	5, 16, 150, 213, 219, 242, 251, 308
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	190, 269, 351
DpnI	GATC	2 cut(s)	37, 56
DpnII	GATC	2 cut(s)	35, 54
EaeI	YGGCCR	2 cut(s)	148, 211
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	4 cut(s)	33, 144, 175, 301
EarI	CTCTTC	4 cut(s)	33, 144, 175, 301
EclXI	CGGCCG	1 cut(s)	148
Eco52I	CGGCCG	1 cut(s)	148
FaeI	CATG	2 cut(s)	160, 317
FaiI	YATR	2 cut(s)	158, 315
FatI	CATG	2 cut(s)	156, 313
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	151, 154, 249
Fsp4HI	GCNGC	3 cut(s)	151, 154, 249
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	151, 154, 249
HaeIII	GGCC	2 cut(s)	150, 213
HapII	CCGG	2 cut(s)	130, 147
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	160, 317
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	130, 147
HphI	GGTGA	2 cut(s)	102, 172
Hpy188I	TCNGA	2 cut(s)	35, 193
Hpy188III	TCNNGA	2 cut(s)	45, 130
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	51, 330
HpyCH4III	ACNGT	2 cut(s)	114, 229
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 248
HpyF3I	CTNAG	3 cut(s)	190, 269, 351
Hsp92II	CATG	2 cut(s)	160, 317
HspAI	GCGC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	35, 54
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	165
LpnPI	CCDG	4 cut(s)	58, 143, 160, 213
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	345
MalI	GATC	2 cut(s)	37, 56
MboI	GATC	2 cut(s)	35, 54
MboII	GAAGA	5 cut(s)	20, 131, 162, 165, 288
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	8 cut(s)	36, 97, 108, 134, 137, 178, 187, 257
MroI	TCCGGA	1 cut(s)	129
MseI	TTAA	2 cut(s)	387, 397
MspI	CCGG	2 cut(s)	130, 147
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	2 cut(s)	10, 105
MwoI	GCNNNNNNNGC	2 cut(s)	205, 248
NdeII	GATC	2 cut(s)	35, 54
NlaIII	CATG	2 cut(s)	160, 317
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	139
Pfl23II	CGTACG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	152, 155, 250
PspLI	CGTACG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	387, 397
SatI	GCNGC	3 cut(s)	151, 154, 249
Sau3AI	GATC	2 cut(s)	35, 54
SetI	ASST	8 cut(s)	126, 170, 198, 244, 253, 281, 310, 357
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	160
SsiI	CCGC	3 cut(s)	103, 151, 154
SspMI	CTAG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	114, 229
TaqI	TCGA	2 cut(s)	53, 232
TauI	GCSGC	2 cut(s)	153, 156
Tru1I	TTAA	2 cut(s)	387, 397
Tru9I	TTAA	2 cut(s)	387, 397
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.