Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0019280

Physical Location & Seq

Genomic Coordinates Reverse (-)

5845540 .. 5848906

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1009800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAGAAGCTGGATCGCACTGGTATTGCCACAAGTATTGTGGGTTCTCTTGGAGTTCATGCGCTGAATGGGGCAGCTCCTAATCAACTAGCTGTTGCATTGCCAATCAATGGTCAAGCTGCAGTCTCTGCTCCTATTCTTCCACCAGCAGTTGCAGTCAATGAACCTGTTGGTAACCCCAGCGAATGTCTACTACTGAAGAATATGTTCGATCCAGCCACTGAGAGGGAGCCAGATTTTGATATAGACATTAAAGAGGATGTTGAAGAAGAATGTTCGAAATATGGCCATGTGAAGCATATTTATGTGGACAAAAACAGTGCTGGTTTCGTGTATTTGTGGTTTGAAACTGTGGAAGCAGCAGCCGGAGCTCAACGTGCAATGCATTGGAGATGGTTTGCAGGAAGGCTGATTTCAGCCCTGTTCATGCAACCTCAAGTTTACGAGGCCAAGTTTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0015630 GO:0016070 GO:0016604 GO:0016607 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

155

Amino Acids

16.74

Weight (kDa)

5.12

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RBM39linker	PF15519	1 - 80	1.1e-10	linker between RRM2 and RRM3 domains in RBM39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019280)

Species	Orthologous Gene IDs
malus_domestica	MD01G1009800.v1.1
rosa_chinensis	RchiOBHm_Chr6g0278641
rosa_laevigata	RLG00000013204 RLG00000013209
rosa_multiflora	Rmu_ssc0000144.1_g000015
rosa_rugosa	Rorug06G0118300
rosa_samantha	Rh6BG232200 Rh6CG234600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	190
AclWI	GGATC	2 cut(s)	21, 206
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	110, 225
AgsI	TTSAA	2 cut(s)	266, 347
AluBI	AGCT	6 cut(s)	10, 77, 92, 119, 371, 461
AluI	AGCT	6 cut(s)	10, 77, 92, 119, 371, 461
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	21, 206
AlwNI	CAGNNNCTG	3 cut(s)	10, 128, 221
AoxI	GGCC	2 cut(s)	286, 447
ApeKI	GCWGC	4 cut(s)	74, 119, 359, 362
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	4 cut(s)	86, 106, 371, 374
BccI	CCATC	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	4 cut(s)	75, 120, 360, 363
BlsI	GCNGC	4 cut(s)	76, 121, 361, 364
BmiI	GGNNCC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 225
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	98, 387
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	110, 225
BseMI	GCAATG	2 cut(s)	98, 387
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	86, 106, 371, 374
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	288, 449
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	110, 225
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	288, 449
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	13, 211
BspANI	GGCC	2 cut(s)	288, 449
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	2 cut(s)	21, 206
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	98, 387
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	13, 211
Bst4CI	ACNGT	2 cut(s)	320, 352
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	16, 214
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	13, 211
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 368, 377
BstPI	GGTNACC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	86, 106, 371, 374
BsuRI	GGCC	2 cut(s)	288, 449
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	18, 219, 325
CaiI	CAGNNNCTG	3 cut(s)	10, 128, 221
CfoI	GCGC	1 cut(s)	64
CspCI	CAANNNNNGTGG	4 cut(s)	19, 21, 54, 56
CviAII	CATG	3 cut(s)	59, 290, 427
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	15, 213
DpnII	GATC	2 cut(s)	13, 211
EaeI	YGGCCR	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	3 cut(s)	62, 293, 430
FaiI	YATR	8 cut(s)	60, 206, 245, 285, 291, 300, 306, 428
FatI	CATG	3 cut(s)	58, 289, 426
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	75, 120, 360, 363
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	4 cut(s)	75, 120, 360, 363
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	4 cut(s)	75, 120, 360, 363
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	288, 449
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	62, 293, 430
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	3 cut(s)	191, 310, 442
Hpy8I	GTNNAC	3 cut(s)	191, 310, 442
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	320, 352
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	8 cut(s)	4, 98, 122, 155, 380, 385, 401, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 368, 377
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	62, 293, 430
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	13, 211
LmnI	GCTCC	5 cut(s)	82, 136, 229, 368, 458
Lsp1109I	GCAGC	4 cut(s)	86, 106, 371, 374
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	15, 213
MboI	GATC	2 cut(s)	13, 211
MboII	GAAGA	4 cut(s)	131, 211, 278, 281
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	4 cut(s)	219, 250, 439, 444
Mox20I	TGGCCA	1 cut(s)	288
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	252, 463
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	128, 368, 377
NdeII	GATC	2 cut(s)	13, 211
NlaIII	CATG	3 cut(s)	62, 293, 430
NlaIV	GGNNCC	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	76, 121, 361, 364
Psp124BI	GAGCTC	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	3 cut(s)	10, 128, 221
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	252, 463
SatI	GCNGC	4 cut(s)	75, 120, 360, 363
Sau3AI	GATC	2 cut(s)	13, 211
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	9 cut(s)	12, 79, 94, 121, 169, 373, 379, 436, 463
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	320, 352
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	210, 278
Tru1I	TTAA	2 cut(s)	252, 463
Tru9I	TTAA	2 cut(s)	252, 463
TscAI	CASTG	3 cut(s)	25, 226, 325
TseI	GCWGC	4 cut(s)	74, 119, 359, 362
TspDTI	ATGAA	3 cut(s)	47, 177, 415
TspRI	CASTG	3 cut(s)	25, 226, 325
Van91I	CCANNNNNTGG	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.