Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019280

Physical Location & Seq

Genomic Coordinates Forward (+)

27631825 .. 27634455

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATATCCGCCAGCAACACCAGGCTCTTCATGGGCTGGTCAAATTTTCAATATGAGCCAGTTGGCATTCCGAATCTTCAAATTCCTACAGCTACTGCTTCTGCAGATACAATTGGTGTTCCAAGGGAATGCTTACTGTTGAGAAATATGTTTGATCCCAAAGAAATTGAGGTTGAACCAGATATTGACGTGGACATTAAAGAAGATGTCCAAGAGGAATGTTCAAAATGCGGGAAGCTGAAACATATATTCATTGACATATCAACCCAGAAACTGACCAGCCAAACTAGCGACATCAGCGCCGTCTGCATCAAGGTCGTCTCGATCCAGCGCAGCCACCACAGCCACCGGAGTTCTCCAACCCAGAAGCCAACTAGATTCCACGCCACCACCCCTGGATCCCACAAATTCTTGGAGCAATTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

6.28

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019280)

Species	Orthologous Gene IDs
malus_domestica	MD01G1009800.v1.1
rosa_chinensis	RchiOBHm_Chr6g0278641
rosa_laevigata	RLG00000013204 RLG00000013209
rosa_multiflora	Rmu_ssc0000144.1_g000015
rosa_rugosa	Rorug06G0118300
rosa_samantha	Rh6BG232200 Rh6CG234600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 231
AclWI	GGATC	4 cut(s)	149, 319, 393, 406
AcsI	RAATTY	3 cut(s)	43, 81, 407
AgsI	TTSAA	4 cut(s)	50, 80, 176, 225
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	20, 394
AluBI	AGCT	2 cut(s)	92, 238
AluI	AGCT	2 cut(s)	92, 238
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	4 cut(s)	149, 319, 393, 406
AlwNI	CAGNNNCTG	2 cut(s)	95, 274
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	3 cut(s)	43, 81, 407
AspLEI	GCGC	2 cut(s)	302, 333
BamHI	GGATCC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	287
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	2 cut(s)	22, 396
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	288, 375
BfmI	CTRYAG	2 cut(s)	87, 102
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	22, 396
BmgBI	CACGTC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	2 cut(s)	22, 396
BmsI	GCATC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	122, 394
BsaWI	WCCGGW	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	22, 396
BseDI	CCNNGG	2 cut(s)	122, 394
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmI	GAATGC	2 cut(s)	66, 134
Bsp143I	GATC	3 cut(s)	154, 324, 398
BspACI	CCGC	2 cut(s)	9, 231
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	4 cut(s)	149, 319, 393, 406
BspQI	GCTCTTC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	122, 394
BssMI	GATC	3 cut(s)	154, 324, 398
BssT1I	CCWWGG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	22, 396
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	302, 333
BstKTI	GATC	3 cut(s)	157, 327, 401
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	154, 324, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	288, 297, 306, 342
BstNI	CCWGG	2 cut(s)	22, 396
BstSCI	CCNGG	2 cut(s)	20, 394
BstSFI	CTRYAG	2 cut(s)	87, 102
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	13
CaiI	CAGNNNCTG	2 cut(s)	95, 274
CfoI	GCGC	2 cut(s)	302, 333
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	9 cut(s)	25, 36, 58, 92, 238, 282, 336, 345, 370
CviKI_1	RGCY	9 cut(s)	25, 36, 58, 92, 238, 282, 336, 345, 370
DpnI	GATC	3 cut(s)	156, 326, 400
DpnII	GATC	3 cut(s)	154, 324, 398
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	20, 394
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	1 cut(s)	34
FaiI	YATR	7 cut(s)	32, 54, 149, 246, 248, 260, 424
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	2 cut(s)	288, 375
GlaI	GCGC	2 cut(s)	301, 332
GluI	GCNGC	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	303
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	2 cut(s)	302, 333
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	300, 331
HinP1I	GCGC	2 cut(s)	300, 331
HinfI	GANTC	2 cut(s)	73, 378
HpaII	CCGG	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	104, 309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	288, 297, 306, 342
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	2 cut(s)	300, 331
Kzo9I	GATC	3 cut(s)	154, 324, 398
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	288, 375
MaeII	ACGT	1 cut(s)	189
MalI	GATC	3 cut(s)	156, 326, 400
MboI	GATC	3 cut(s)	154, 324, 398
MboII	GAAGA	3 cut(s)	19, 68, 215
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	6 cut(s)	43, 81, 111, 165, 407, 419
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	2 cut(s)	163, 208
MseI	TTAA	1 cut(s)	198
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	2 cut(s)	22, 396
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	2 cut(s)	66, 134
MvaI	CCWGG	2 cut(s)	22, 396
MwoI	GCNNNNNNNGC	4 cut(s)	288, 297, 306, 342
NdeII	GATC	3 cut(s)	154, 324, 398
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	2 cut(s)	66, 134
PfeI	GAWTC	2 cut(s)	73, 378
PkrI	GCNGC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	20, 394
PspGI	CCWGG	2 cut(s)	20, 394
PspN4I	GGNNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	2 cut(s)	95, 274
PsuI	RGATCY	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	154, 324, 398
ScrFI	CCNGG	2 cut(s)	22, 396
SetI	ASST	5 cut(s)	94, 174, 192, 240, 318
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	2 cut(s)	87, 102
Sse9I	AATT	6 cut(s)	43, 81, 111, 165, 407, 419
SsiI	CCGC	2 cut(s)	9, 231
SspMI	CTAG	2 cut(s)	288, 375
StyD4I	CCNGG	2 cut(s)	20, 394
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	323
TasI	AATT	6 cut(s)	43, 81, 111, 165, 407, 419
TfiI	GAWTC	2 cut(s)	73, 378
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	19, 241
XapI	RAATTY	3 cut(s)	43, 81, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	2 cut(s)	288, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.