Rh6CG234600

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019280
Physical Location & Seq
Reverse (-)
39817321 .. 39817917
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG234600.1

Sequence Viewer

Length: 384 bp
ATGAGCCAGTTGGTGTTCCGGATCCAAATTCCTACAGCTACTGCTTCTGTAGATACAATTGGTGTTCCAAGGGAATGCTTACTGTTGAGAAATATGTTTGATCCCAAAGAAATTGAGGCTGAACCAGATATTGACATGGACATTAAAGATGTTCAGGAGGAATGTTCAAAATGCGGGAAGCTGAAGCATATATTTGTTGACAAGAATAGCGCTGGTTTTGTGTACTTGAGATTTGAGAACACACAAGCTGCAATACATGCTCGACAAGTTCTCCATGGAAGATGGTTTGCTGGGAAGAAGATCACAGCCACTTTCATAAATCGTCGTCCCTTGGAGGCCAAGTCTACTTGCTGCCTAAGCTTAGCCTCTGTAATCTCTTTGTAA

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

8.32

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 102 2.1e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019280)

Species Orthologous Gene IDs
malus_domestica MD01G1009800.v1.1
rosa_chinensis RchiOBHm_Chr6g0278641
rosa_laevigata RLG00000013204 RLG00000013209
rosa_multiflora Rmu_ssc0000144.1_g000015
rosa_rugosa Rorug06G0118300
rosa_samantha Rh6BG232200 Rh6CG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 1 cut(s) 174
AclWI GGATC 3 cut(s) 16, 29, 95
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 211
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 4 cut(s) 38, 181, 248, 360
AluI AGCT 4 cut(s) 38, 181, 248, 360
AlwI GGATC 3 cut(s) 16, 29, 95
AlwNI CAGNNNCTG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 18
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 248, 351
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 235, 338
BccI CCATC 1 cut(s) 276
BfmI CTRYAG 2 cut(s) 33, 48
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 2 cut(s) 249, 352
BlpI GCTNAGC 1 cut(s) 361
BlsI GCNGC 2 cut(s) 250, 353
BmiI GGNNCC 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 68, 274, 330
BsaWI WCCGGW 1 cut(s) 18
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 326, 356
Bse1I ACTGG 1 cut(s) 7
BseAI TCCGGA 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 68, 274, 330
BseNI ACTGG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 235, 338
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 338
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 3 cut(s) 21, 100, 300
Bsp1720I GCTNAGC 1 cut(s) 361
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 338
BspEI TCCGGA 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 3 cut(s) 16, 29, 95
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 3 cut(s) 68, 274, 330
BssMI GATC 3 cut(s) 21, 100, 300
BssT1I CCWWGG 3 cut(s) 68, 274, 330
Bst4CI ACNGT 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 356, 361
BstDSI CCRYGG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 24, 103, 303
BstMBI GATC 3 cut(s) 21, 100, 300
BstMWI GCNNNNNNNGC 2 cut(s) 257, 357
BstNSI RCATGY 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 33, 48
BstV1I GCAGC 2 cut(s) 235, 338
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 223
CviAII CATG 3 cut(s) 136, 257, 275
CviJI RGCY 9 cut(s) 6, 38, 119, 181, 248, 308, 338, 360, 365
CviKI_1 RGCY 9 cut(s) 6, 38, 119, 181, 248, 308, 338, 360, 365
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 356, 361
DpnI GATC 3 cut(s) 23, 102, 302
DpnII GATC 3 cut(s) 21, 100, 300
Eco130I CCWWGG 3 cut(s) 68, 274, 330
Eco47III AGCGCT 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 203
EcoT14I CCWWGG 3 cut(s) 68, 274, 330
ErhI CCWWGG 3 cut(s) 68, 274, 330
FaeI CATG 3 cut(s) 139, 260, 278
FaiI YATR 7 cut(s) 95, 137, 189, 191, 258, 276, 317
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 135, 256, 274
FauI CCCGC 1 cut(s) 167
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 249, 352
Fsp4HI GCNGC 2 cut(s) 249, 352
GlaI GCGC 1 cut(s) 211
GluI GCNGC 2 cut(s) 249, 352
GsaI CCCAGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 19
HhaI GCGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 139, 260, 278
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 358
HpaII CCGG 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 199, 223, 345
Hpy188III TCNNGA 2 cut(s) 19, 155
Hpy8I GTNNAC 3 cut(s) 199, 223, 345
Hpy99I CGWCG 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 357
HpyF3I CTNAG 2 cut(s) 356, 361
Hsp92II CATG 3 cut(s) 139, 260, 278
HspAI GCGC 1 cut(s) 210
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 21, 100, 300
LpnPI CCDG 6 cut(s) 20, 32, 138, 140, 198, 276
Lsp1109I GCAGC 2 cut(s) 235, 338
MalI GATC 3 cut(s) 23, 102, 302
MboI GATC 3 cut(s) 21, 100, 300
MboII GAAGA 3 cut(s) 291, 307, 310
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 1 cut(s) 21
MluCI AATT 3 cut(s) 27, 57, 111
MnlI CCTC 4 cut(s) 109, 151, 328, 376
MroI TCCGGA 1 cut(s) 18
MseI TTAA 1 cut(s) 144
MspI CCGG 1 cut(s) 19
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 257, 357
NcoI CCATGG 1 cut(s) 274
NdeII GATC 3 cut(s) 21, 100, 300
NlaIII CATG 3 cut(s) 139, 260, 278
NlaIV GGNNCC 1 cut(s) 23
NspI RCATGY 1 cut(s) 260
PctI GAATGC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 250, 353
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 249, 352
Sau3AI GATC 3 cut(s) 21, 100, 300
SetI ASST 4 cut(s) 40, 183, 250, 362
SfcI CTRYAG 2 cut(s) 33, 48
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 3 cut(s) 27, 57, 111
SsiI CCGC 1 cut(s) 174
StyI CCWWGG 3 cut(s) 68, 274, 330
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 262
TasI AATT 3 cut(s) 27, 57, 111
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 2 cut(s) 248, 351
TspDTI ATGAA 1 cut(s) 304
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.