Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000144.1

Orthogroup ID

OG0019280

Physical Location & Seq

Genomic Coordinates Reverse (-)

74936 .. 76753

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000144.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgggttctgtgagagggagatcgaacagagggagaccgagcagaggagatagaccgagcagagaccgagcagagatcgaccggagaccgagcggagatcgagcagagggagatcgaccggagaccgagcagagatcgaccggatggagatgggagatcgaccgatggagatgggagatcgaccagatggagatgggagatcgaccagatggagatgggagatcgaccggagaccgatgggagatcgagcagaggggagaggggagatgggagagagcagagggagatgagagatgggatcgagtgagagatgggatcgagagactgatggaggtgcagactgcagacatcagcactggaaatccaaagggtagtgtcttgctgtcaatagcactggtctaccagtggcacttccagcggcaccaatcctgggagctgcaccaggagtacgtttcttctcttggtactcccatggcctctgttcctggtcttgctggacttggtgttccgggtcttcaaattcctacagctactgttccttctgtagatacaattggtgttccaagcgaatgcttactgttgacaaatatgtttgatcctaaagaaattgaggctgaaccagatattgacgtggacattaaagaagatgttcaggaggaatgttcaaaatacgggaagctgaaacatatttttgttgataagaataccgctggttttgtgtacttgagatttgagaacacacaagctgcacaagttctccatggaagatggtttgctgggaagatgatcacagcgactttcatgtgtagcaagaaagaatgtcatgttgagatttacatcacttggaaattttcagtcagtgcaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

289

Amino Acids

33.06

Weight (kDa)

5.34

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019280)

Species	Orthologous Gene IDs
malus_domestica	MD01G1009800.v1.1
rosa_chinensis	RchiOBHm_Chr6g0278641
rosa_laevigata	RLG00000013204 RLG00000013209
rosa_multiflora	Rmu_ssc0000144.1_g000015
rosa_rugosa	Rorug06G0118300
rosa_samantha	Rh6BG232200 Rh6CG234600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	3 cut(s)	93, 418, 708
AclWI	GGATC	3 cut(s)	306, 323, 590
AcsI	RAATTY	2 cut(s)	519, 848
AfaI	GTAC	3 cut(s)	449, 466, 722
AfiI	CCNNNNNNNGG	2 cut(s)	44, 430
AgsI	TTSAA	2 cut(s)	518, 666
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	3 cut(s)	428, 441, 484
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	4 cut(s)	436, 530, 679, 746
AluI	AGCT	4 cut(s)	436, 530, 679, 746
Alw26I	GTCTC	6 cut(s)	28, 57, 79, 116, 225, 316
AlwI	GGATC	3 cut(s)	306, 323, 590
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	436, 746
ApoI	RAATTY	2 cut(s)	519, 848
Asp700I	GAANNNNTTC	1 cut(s)	648
AsuC2I	CCSGG	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	423, 733
BciT130I	CCWGG	3 cut(s)	430, 443, 486
BclI	TGATCA	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	6 cut(s)	28, 57, 79, 116, 225, 316
BfmI	CTRYAG	3 cut(s)	342, 525, 543
BisI	GCNGC	3 cut(s)	419, 437, 747
BlsI	GCNGC	3 cut(s)	420, 438, 748
Bme1390I	CCNGG	4 cut(s)	430, 443, 486, 510
BmgBI	CACGTC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	4 cut(s)	430, 443, 486, 510
BpiI	GAAGAC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	836
BsaI	GGTCTC	5 cut(s)	28, 57, 79, 116, 225
BsaJI	CCNNGG	3 cut(s)	429, 471, 760
BsaWI	WCCGGW	4 cut(s)	81, 118, 140, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 430
Bse1I	ACTGG	3 cut(s)	361, 399, 403
Bse3DI	GCAATG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	836
BseBI	CCWGG	3 cut(s)	430, 443, 486
BseDI	CCNNGG	3 cut(s)	429, 471, 760
BseGI	GGATG	1 cut(s)	149
BseJI	GATNNNNATC	1 cut(s)	836
BseLI	CCNNNNNNNGG	2 cut(s)	44, 430
BseMI	GCAATG	1 cut(s)	870
BseNI	ACTGG	3 cut(s)	361, 399, 403
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	423, 733
BseYI	CCCAGC	1 cut(s)	776
BsgI	GTGCAG	3 cut(s)	356, 422, 732
Bsh1285I	CGRYCG	5 cut(s)	82, 119, 141, 163, 228
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	420
BsiEI	CGRYCG	5 cut(s)	82, 119, 141, 163, 228
BsiSI	CCGG	5 cut(s)	82, 119, 141, 228, 509
BslI	CCNNNNNNNGG	2 cut(s)	44, 430
BsmAI	GTCTC	6 cut(s)	28, 57, 79, 116, 225, 316
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	5 cut(s)	28, 57, 79, 116, 225
Bsp19I	CCATGG	2 cut(s)	471, 760
BspACI	CCGC	3 cut(s)	93, 418, 708
BspANI	GGCC	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	306, 323, 590
BspT107I	GGYRCC	1 cut(s)	420
BspTNI	GGTCTC	5 cut(s)	28, 57, 79, 116, 225
BsrBI	CCGCTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	3 cut(s)	361, 399, 403
BssECI	CCNNGG	3 cut(s)	429, 471, 760
BssT1I	CCWWGG	2 cut(s)	471, 760
Bst2UI	CCWGG	3 cut(s)	430, 443, 486
Bst4CI	ACNGT	2 cut(s)	535, 579
BstDSI	CCRYGG	2 cut(s)	471, 760
BstF5I	GGATG	1 cut(s)	149
BstMAI	GTCTC	6 cut(s)	28, 57, 79, 116, 225, 316
BstMCI	CGRYCG	5 cut(s)	82, 119, 141, 163, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	3 cut(s)	430, 443, 486
BstSCI	CCNGG	4 cut(s)	428, 441, 484, 508
BstSFI	CTRYAG	3 cut(s)	342, 525, 543
BstV1I	GCAGC	2 cut(s)	423, 733
BstV2I	GAAGAC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	2 cut(s)	471, 760
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	4 cut(s)	354, 392, 410, 865
CaiI	CAGNNNCTG	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	448, 465, 721
CviAII	CATG	4 cut(s)	472, 761, 802, 824
CviJI	RGCY	6 cut(s)	436, 476, 530, 614, 679, 746
CviKI_1	RGCY	6 cut(s)	436, 476, 530, 614, 679, 746
CviQI	GTAC	3 cut(s)	448, 465, 721
Eco130I	CCWWGG	2 cut(s)	471, 760
Eco31I	GGTCTC	5 cut(s)	28, 57, 79, 116, 225
EcoRII	CCWGG	3 cut(s)	428, 441, 484
EcoT14I	CCWWGG	2 cut(s)	471, 760
ErhI	CCWWGG	2 cut(s)	471, 760
FaeI	CATG	4 cut(s)	475, 764, 805, 827
FaiI	YATR	6 cut(s)	473, 590, 687, 762, 803, 825
FatI	CATG	4 cut(s)	471, 760, 801, 823
FbaI	TGATCA	1 cut(s)	786
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	419, 437, 747
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	419, 437, 747
GluI	GCNGC	3 cut(s)	419, 437, 747
GsaI	CCCAGC	1 cut(s)	780
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	5 cut(s)	82, 119, 141, 228, 509
Hin1II	CATG	4 cut(s)	475, 764, 805, 827
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HpaII	CCGG	5 cut(s)	82, 119, 141, 228, 509
Hpy166II	GTNNAC	4 cut(s)	400, 582, 634, 721
Hpy188III	TCNNGA	2 cut(s)	319, 653
Hpy8I	GTNNAC	4 cut(s)	400, 582, 634, 721
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	2 cut(s)	535, 579
HpyCH4IV	ACGT	2 cut(s)	450, 630
HpyCH4V	TGCA	5 cut(s)	337, 344, 439, 749, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpySE526I	ACGT	2 cut(s)	450, 630
Hsp92II	CATG	4 cut(s)	475, 764, 805, 827
Ksp22I	TGATCA	1 cut(s)	786
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	2 cut(s)	423, 733
MaeII	ACGT	2 cut(s)	450, 630
MbiI	CCGCTC	1 cut(s)	93
MboII	GAAGA	5 cut(s)	447, 506, 656, 777, 793
MfeI	CAATTG	1 cut(s)	552
MluCI	AATT	4 cut(s)	519, 552, 606, 848
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	1 cut(s)	639
MspA1I	CMGCKG	2 cut(s)	418, 710
MspI	CCGG	5 cut(s)	82, 119, 141, 228, 509
MspR9I	CCNGG	4 cut(s)	430, 443, 486, 510
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	3 cut(s)	430, 443, 486
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	2 cut(s)	471, 760
NlaIII	CATG	4 cut(s)	475, 764, 805, 827
NlaIV	GGNNCC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	648
PkrI	GCNGC	3 cut(s)	420, 438, 748
Psp6I	CCWGG	3 cut(s)	428, 441, 484
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	3 cut(s)	428, 441, 484
PspN4I	GGNNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	449, 466, 722
RsaNI	GTAC	3 cut(s)	448, 465, 721
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	3 cut(s)	419, 437, 747
ScrFI	CCNGG	4 cut(s)	430, 443, 486, 510
SetI	ASST	7 cut(s)	336, 438, 453, 532, 633, 681, 748
SfcI	CTRYAG	3 cut(s)	342, 525, 543
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	4 cut(s)	519, 552, 606, 848
SsiI	CCGC	3 cut(s)	93, 418, 708
StyD4I	CCNGG	4 cut(s)	428, 441, 484, 508
StyI	CCWWGG	2 cut(s)	471, 760
TaaI	ACNGT	2 cut(s)	535, 579
TaiI	ACGT	2 cut(s)	453, 633
TaqII	GACCGA	7 cut(s)	52, 70, 81, 103, 140, 177, 249
TasI	AATT	4 cut(s)	519, 552, 606, 848
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	4 cut(s)	361, 399, 410, 865
TseI	GCWGC	2 cut(s)	436, 746
TspDTI	ATGAA	1 cut(s)	790
TspRI	CASTG	4 cut(s)	361, 399, 410, 865
XapI	RAATTY	2 cut(s)	519, 848
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.