Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019280

Physical Location & Seq

Genomic Coordinates Forward (+)

27694759 .. 27696948

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCAGTCAAATTTTCAATATGAGCCAGTTGGCATTCCGAATCTTCAAATTCCTACAGCTACTGCTTCTGCAGATACAATTGGTGTTCCAAGGGAATGCTTACTGTTGAGAAATATGTTTGATCCCAAAGAAATTGAGGTTGAACCAGATATTGACGTGGACATTAAAGAAGATGTCCAAGAGGAATGTTCAAAATGCGGGAAGCTGAAACATATATTCATTGACATATCAACCCAGAAACTGACCAGCCAAACTAGCGACATCAGCGCCGTCTGCATCAAGGTCGTCTCGATCCAGCGCAGCCACCACAGCCACCGGAGTTCTCCAACCCAGAAGCCAACTAGATTCCACGCCACCACCCCTGGATCCCACAAATTCTTGGAGCAATTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

6.04

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019280)

Species	Orthologous Gene IDs
malus_domestica	MD01G1009800.v1.1
rosa_chinensis	RchiOBHm_Chr6g0278641
rosa_laevigata	RLG00000013204 RLG00000013209
rosa_multiflora	Rmu_ssc0000144.1_g000015
rosa_rugosa	Rorug06G0118300
rosa_samantha	Rh6BG232200 Rh6CG234600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	4 cut(s)	116, 286, 360, 373
AcsI	RAATTY	3 cut(s)	10, 48, 374
AgsI	TTSAA	4 cut(s)	17, 47, 143, 192
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	59, 205
AluI	AGCT	2 cut(s)	59, 205
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	4 cut(s)	116, 286, 360, 373
AlwNI	CAGNNNCTG	2 cut(s)	62, 241
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	3 cut(s)	10, 48, 374
AspLEI	GCGC	2 cut(s)	269, 300
BamHI	GGATCC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	255, 342
BfmI	CTRYAG	2 cut(s)	54, 69
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	363
BmgBI	CACGTC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	89, 361
BsaWI	WCCGGW	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	89, 361
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
BsmI	GAATGC	2 cut(s)	33, 101
Bsp143I	GATC	3 cut(s)	121, 291, 365
BspACI	CCGC	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	4 cut(s)	116, 286, 360, 373
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	89, 361
BssMI	GATC	3 cut(s)	121, 291, 365
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	269, 300
BstKTI	GATC	3 cut(s)	124, 294, 368
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	121, 291, 365
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 264, 273, 309
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	54, 69
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BtrI	CACGTC	1 cut(s)	157
CaiI	CAGNNNCTG	2 cut(s)	62, 241
CfoI	GCGC	2 cut(s)	269, 300
CviJI	RGCY	7 cut(s)	25, 59, 205, 249, 303, 312, 337
CviKI_1	RGCY	7 cut(s)	25, 59, 205, 249, 303, 312, 337
DpnI	GATC	3 cut(s)	123, 293, 367
DpnII	GATC	3 cut(s)	121, 291, 365
Eco130I	CCWWGG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	292
FaiI	YATR	6 cut(s)	21, 116, 213, 215, 227, 391
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	255, 342
GlaI	GCGC	2 cut(s)	268, 299
GluI	GCNGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	270
HapII	CCGG	1 cut(s)	316
HhaI	GCGC	2 cut(s)	269, 300
Hin6I	GCGC	2 cut(s)	267, 298
HinP1I	GCGC	2 cut(s)	267, 298
HinfI	GANTC	2 cut(s)	40, 345
HpaII	CCGG	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	4, 71, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 264, 273, 309
HpySE526I	ACGT	1 cut(s)	156
HspAI	GCGC	2 cut(s)	267, 298
Kzo9I	GATC	3 cut(s)	121, 291, 365
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	39, 159, 248, 259, 308, 329, 344, 348, 375
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	255, 342
MaeII	ACGT	1 cut(s)	156
MalI	GATC	3 cut(s)	123, 293, 367
MboI	GATC	3 cut(s)	121, 291, 365
MboII	GAAGA	2 cut(s)	35, 182
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	6 cut(s)	10, 48, 78, 132, 374, 386
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	2 cut(s)	130, 175
MseI	TTAA	1 cut(s)	165
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	33, 101
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	255, 264, 273, 309
NdeII	GATC	3 cut(s)	121, 291, 365
NlaIV	GGNNCC	1 cut(s)	367
PctI	GAATGC	2 cut(s)	33, 101
PfeI	GAWTC	2 cut(s)	40, 345
PkrI	GCNGC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	2 cut(s)	62, 241
PsuI	RGATCY	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	121, 291, 365
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	5 cut(s)	61, 141, 159, 207, 285
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	2 cut(s)	54, 69
Sse9I	AATT	6 cut(s)	10, 48, 78, 132, 374, 386
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	2 cut(s)	255, 342
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	290
TasI	AATT	6 cut(s)	10, 48, 78, 132, 374, 386
TfiI	GAWTC	2 cut(s)	40, 345
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	208
XapI	RAATTY	3 cut(s)	10, 48, 374
XspI	CTAG	2 cut(s)	255, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.