MD01G1018200.v1.1
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016140
Physical Location & Seq
Forward (+)
7834281 .. 7834984
704 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1018200.v1.1.491

Sequence Viewer

Length: 594 bp
ATGTTGGCAAGCAGCAAGACCACACCTCGAAGGTACTCTCGATTATCGTTCAAGCAGAGGCTAAAGGTTGCTGTGGAGGTCGCTCAGTGTTTGCTTTACCTACATGATAGAGGCCTGCCCCACGGGAACCTAAAGCCAAGTAATGTGCTCCTGGCAGGTCCTGATTACAGTGCTCACCTAACTGATTATAGTCTTCACCGTCTGATGACACCTGCTGGTATCGCCGAACAGATTTTAACTATGGGAGCACTTGGATACCGTGCTCCAGAGCTTGTCACCGCAACCAAACCAGTCCCTTCTTTCAAAGCTGATGTGTATGCTTTTGGGGTGATTTTGATGGAATTGTTAACCAGAAGAAGTGCAGGAGACATTATATCGGGACAGTCGGGGGCGGTTGACCTCACAGACTGGGTTCGGCTGTGTGATCGAGAAGGACGAGGAATGGATTGCATTGACAGAGACATTGCTGGTGGGGAAGAACCCTCGAAAGCAATGGATGAATTGCTAGCAATATCGCTCAGGTGTATTCTACCTGTAAATGAGAGGCCTAACATCAGACAAGTCTTTGAGGATGTCAATTCTATATCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

198

Amino Acids

21.66

Weight (kDa)

6.9

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 13 - 118 4.1e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 15 - 170 2.5e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10020 AT5G10020
fragaria_vesca FvH4_1g22060
malus_domestica MD01G1018200.v1.1
pyrus_communis pycom01g04790
rosa_chinensis RchiOBHm_Chr2g0116131
rosa_laevigata RLG00000018242
rosa_multiflora Rmu_sc0002288.1_g000016
rosa_roxburghii Rroxscaffold_2G00127470
rosa_rugosa Rorug02G0203700
rosa_samantha Rh2AG260100 Rh2BG271100 Rh2CG266400 Rh2DG268300
rosa_wichuraiana Rw2G020370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 2 cut(s) 146, 220
AciI CCGC 2 cut(s) 279, 392
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 2 cut(s) 52, 304
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 271, 308
AluI AGCT 2 cut(s) 271, 308
Alw21I GWGCWC 4 cut(s) 150, 175, 250, 265
Alw26I GTCTC 2 cut(s) 360, 453
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 2 cut(s) 112, 545
ApeKI GCWGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 167, 188, 268, 340
AsuNHI GCTAGC 1 cut(s) 505
AvaII GGWCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 4 cut(s) 150, 175, 250, 265
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 360, 453
BfaI CTAG 1 cut(s) 506
BfuAI ACCTGC 2 cut(s) 146, 220
BfuI GTATCC 1 cut(s) 248
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 418
BmtI GCTAGC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 121
Bse1I ACTGG 3 cut(s) 290, 413, 588
Bse3DI GCAATG 2 cut(s) 462, 498
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 502, 577
BseMI GCAATG 2 cut(s) 462, 498
BseMII CTCAG 2 cut(s) 98, 532
BseNI ACTGG 3 cut(s) 290, 413, 588
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 2 cut(s) 114, 547
BsiHKAI GWGCWC 4 cut(s) 150, 175, 250, 265
BslFI GGGAC 2 cut(s) 278, 393
BsmAI GTCTC 2 cut(s) 360, 453
BsmFI GGGAC 2 cut(s) 278, 393
BsnI GGCC 2 cut(s) 114, 547
Bsp1286I GDGCHC 4 cut(s) 150, 175, 250, 265
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 2 cut(s) 279, 392
BspANI GGCC 2 cut(s) 114, 547
BspCNI CTCAG 2 cut(s) 97, 531
BspLI GGNNCC 1 cut(s) 128
BspMI ACCTGC 2 cut(s) 146, 220
BspOI GCTAGC 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 462, 498
BsrI ACTGG 3 cut(s) 290, 413, 588
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 170, 200, 260, 384
BstC8I GCNNGC 3 cut(s) 10, 116, 507
BstDEI CTNAG 2 cut(s) 84, 518
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 502, 577
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 2 cut(s) 360, 453
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 185
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 114, 547
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 502, 577
BtsIMutI CAGTG 2 cut(s) 92, 175
BveI ACCTGC 2 cut(s) 146, 220
Cac8I GCNNGC 3 cut(s) 10, 116, 507
CaiI CAGNNNCTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 104
CviJI RGCY 7 cut(s) 61, 114, 136, 271, 308, 418, 547
CviKI_1 RGCY 7 cut(s) 61, 114, 136, 271, 308, 418, 547
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 84, 518
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
Eco147I AGGCCT 2 cut(s) 114, 547
Eco47I GGWCC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 107
FaiI YATR 6 cut(s) 105, 189, 242, 318, 374, 584
FaqI GGGAC 2 cut(s) 278, 393
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 2 cut(s) 509, 584
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 506
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 114, 547
Hin1II CATG 1 cut(s) 107
HincII GTYRAC 2 cut(s) 348, 397
HindII GTYRAC 2 cut(s) 348, 397
HpaI GTTAAC 1 cut(s) 348
HphI GGTGA 4 cut(s) 167, 188, 268, 340
Hpy166II GTNNAC 2 cut(s) 348, 397
Hpy188I TCNGA 2 cut(s) 204, 557
Hpy188III TCNNGA 5 cut(s) 39, 161, 266, 378, 428
Hpy8I GTNNAC 2 cut(s) 348, 397
HpyAV CCTTC 3 cut(s) 24, 306, 425
HpyCH4III ACNGT 4 cut(s) 170, 200, 260, 384
HpyCH4V TGCA 2 cut(s) 362, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 84, 518
Hsp92II CATG 1 cut(s) 107
KspAI GTTAAC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 3 cut(s) 153, 245, 268
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 506
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 3 cut(s) 185, 366, 488
MhlI GDGCHC 4 cut(s) 150, 175, 250, 265
MluCI AATT 3 cut(s) 341, 500, 577
MnlI CCTC 9 cut(s) 36, 51, 70, 104, 410, 431, 493, 537, 562
MseI TTAA 2 cut(s) 236, 347
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 424
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 220
PceI AGGCCT 2 cut(s) 114, 547
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PkrI GCNGC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 236, 347
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 4 cut(s) 150, 175, 250, 265
SinI GGWCC 1 cut(s) 158
Sse9I AATT 3 cut(s) 341, 500, 577
SseBI AGGCCT 2 cut(s) 114, 547
SsiI CCGC 2 cut(s) 279, 392
SspMI CTAG 1 cut(s) 506
StuI AGGCCT 2 cut(s) 114, 547
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 170, 200, 260, 384
TaqI TCGA 4 cut(s) 28, 40, 427, 485
TasI AATT 3 cut(s) 341, 500, 577
Tru1I TTAA 2 cut(s) 236, 347
Tru9I TTAA 2 cut(s) 236, 347
TscAI CASTG 2 cut(s) 92, 175
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 513
TspRI CASTG 2 cut(s) 92, 175
VpaK11BI GGWCC 1 cut(s) 158
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.