MD01G1022700.v1.1

Apoptotic chromatin condensation inducer in the nucleus

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
9004172 .. 9007895
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1022700.v1.1.491

Sequence Viewer

Length: 1638 bp
ATGTCATATCAATATCCGATTCTTGGCGACCGACCAATCAACCTTTTGAAGGTTACAGAATTAAAAGAGGAGCTTAAGAAGCGAAGTTTGACAACCAAGGGTTTGAAGGATGATTTGGTAAAACGGTTGGATGAAGCAATACGAATTGAAAGGGAAAATGCTTCGACCCAGGATAATGGACTTTATGGTGATAAAGTTGTAGAGCCAATTGCAGTTCTTGCTAAAACACCTAGAAGCACTGGTTCTGGTGGACGTAAAAGGACTGGAAAAGTTGATTTGCCGGTTCAGGTTGATGTTAATGCCAGTGCTACAGACTTGGATCTAGGGGGTATTCAAGAAGGTTATGTTCTGGTTGATAAAGATGCTGGTGCCATAGCTGAAGAGGAGCTGGTTGTTCAATCAACTATTGTGGAAACCAGTGTTAGGGTCACTGAGACTCAGGTGTCTGAGGCAGCATTTGTTGGTGATAATTCACAGAACACTGAAGCTAATAAGGGAATTGGGAATTCACAGCCCCTATTTGACAATGAGGTTCCAAAGTCCCTAGTAGAGAATGAGGATCCAAAGCCCGTAGTGGAGAATGAGGATCCAAAGCCCATAGTAGAGAATGAGGATCCAAAGCCTCAGGTGGTGCATGAGGATCCAGAACCGTATTGTAAGAATGAGGATCCAAGGCCTGACCTGGAGAATGAGGATCCAGAGCCCCAGCTGGAGAATGAGAATCCAAAGCCCCAGCTGGAGAATGTTGATCCTAAGGCCCAGCTGGAGGATGGGGATTCAAAGCCCCATCTGGAGAAAGAGAGTTTAGAGCCTACAGACAAGGATGTCATGGTCAACTCTTCAGCTCCAAACTACCAGGTATCTGAGGTCAGCCATTTAGGGTATGAAGTAAAATATGATTCTATTTCTACTGATTCTGTGTCAATTAATGAAAAGATTGAACTAAAGGATAATATAATTGCTGATCATGTCAAATTAGAATTAGATATTAACCCGGAGATGGTGGACCCATCATCCAGCACTGTTGTCCCAGTCAGTGGTGATTCACATCCACTGGATGTTGAAGAGCCACACCAGGACAAAGCTTCTGTTGGAGAGAAAGTTGACAACAATGATACAAATGCAGACATAAGCAAGAAAAATGATAGTGCTGATGTGGGGTACTCAGAAAAATTAAATTTAGAGAGAAGTTCTGGAGATGATTCTATGGAAGAAGATGTGCTGGACAGTAAACAAATTGATTCAAAGTATAATTCTGACGATGTGGGAGAGATGTGTGAGAAAAATGATGTACCCATTGTAAAGGAGGAAAGTCATGTTGATATTGTGGGAGATGATATTTCCCTGGACAAAATGGATGAAAATATTGAGATCAAGAATCATACTGCCCCACCTGCTGAGAAAAGAAAGCTTAATGATCAAGCAGCAGTTGGAAGCAATGAGCCTATAAAAAGGCGCAGGTGGAACTCTGAAAGCCTTAAAGTTCCAGAGCTGCAAAGTCCTATTCAAAAGCTGACGGTCACACCCAAGGAAACGTTCCAGACCACCAGTTTAAAGCGTAACTTTTCGAGATCAAACTCTACTATGAGTGAGGAAGCTCCCAAAGAACGTGTTGGTGAGTCATTGGTCTTTTGTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

60.34

Weight (kDa)

4.48

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP PF02037 13 - 48 5.4e-11 SAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1402, 1449
AasI GACNNNNNNGTC 2 cut(s) 442, 824
Acc36I ACCTGC 2 cut(s) 1402, 1449
AccB1I GGYRCC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 1037
AclI AACGTT 1 cut(s) 1535
AcsI RAATTY 2 cut(s) 505, 1177
AcuI CTGAAG 3 cut(s) 399, 504, 825
AfaI GTAC 2 cut(s) 1163, 1293
AfiI CCNNNNNNNGG 6 cut(s) 23, 49, 423, 766, 1000, 1037
AflII CTTAAG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 1609
AjnI CCWGG 5 cut(s) 168, 681, 855, 1074, 1344
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 1520, 1552
Alw26I GTCTC 1 cut(s) 428
AoxI GGCC 2 cut(s) 674, 756
ApeKI GCWGC 3 cut(s) 452, 1424, 1492
ApoI RAATTY 2 cut(s) 505, 1177
AseI ATTAAT 1 cut(s) 927
AspLEI GCGC 1 cut(s) 1458
AspS9I GGNCC 2 cut(s) 757, 1006
AsuC2I CCSGG 1 cut(s) 995
AsuHPI GGTGA 4 cut(s) 200, 476, 1052, 1628
AvaII GGWCC 1 cut(s) 1006
AxyI CCTNAGG 2 cut(s) 624, 753
BamHI GGATCC 6 cut(s) 559, 586, 613, 640, 667, 694
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 464, 1436, 1479
BccI CCATC 4 cut(s) 764, 795, 994, 1018
BciT130I CCWGG 5 cut(s) 170, 683, 857, 1076, 1346
BclI TGATCA 2 cut(s) 964, 1417
BcnI CCSGG 1 cut(s) 995
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 3 cut(s) 231, 323, 545
BfmI CTRYAG 2 cut(s) 309, 813
BfrI CTTAAG 1 cut(s) 74
BfuAI ACCTGC 2 cut(s) 1402, 1449
BisI GCNGC 3 cut(s) 453, 1425, 1493
BlsI GCNGC 3 cut(s) 454, 1426, 1494
Bme1390I CCNGG 6 cut(s) 170, 683, 857, 995, 1076, 1346
Bme18I GGWCC 1 cut(s) 1006
BmgT120I GGNCC 2 cut(s) 757, 1006
BmiI GGNNCC 9 cut(s) 370, 534, 561, 588, 615, 642, 669, 696, 1008
BmrFI CCNGG 6 cut(s) 170, 683, 857, 995, 1076, 1346
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 1025
BpmI CTGGAG 6 cut(s) 704, 731, 758, 785, 812, 1215
BpuMI CCSGG 1 cut(s) 995
BsaBI GATNNNNATC 1 cut(s) 1047
BsaJI CCNNGG 5 cut(s) 96, 168, 671, 1344, 1527
BsaXI ACNNNNNCTCC 2 cut(s) 1086, 1116
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 49, 423, 766, 1000, 1037
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 7 cut(s) 244, 268, 303, 417, 1031, 1059, 1548
Bse21I CCTNAGG 2 cut(s) 624, 753
Bse3DI GCAATG 1 cut(s) 1444
Bse8I GATNNNNATC 1 cut(s) 1047
BseBI CCWGG 5 cut(s) 170, 683, 857, 1076, 1346
BseDI CCNNGG 5 cut(s) 96, 168, 671, 1344, 1527
BseGI GGATG 8 cut(s) 115, 136, 775, 829, 1013, 1048, 1063, 1363
BseJI GATNNNNATC 1 cut(s) 1047
BseLI CCNNNNNNNGG 6 cut(s) 23, 49, 423, 766, 1000, 1037
BseMI GCAATG 1 cut(s) 1444
BseMII CTCAG 7 cut(s) 423, 438, 452, 638, 855, 1179, 1389
BseNI ACTGG 7 cut(s) 244, 268, 303, 417, 1031, 1059, 1548
BseRI GAGGAG 2 cut(s) 83, 398
BseXI GCAGC 3 cut(s) 464, 1436, 1479
BseYI CCCAGC 3 cut(s) 705, 732, 759
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 2 cut(s) 676, 758
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 2 cut(s) 281, 995
BslFI GGGAC 2 cut(s) 526, 1013
BslI CCNNNNNNNGG 6 cut(s) 23, 49, 423, 766, 1000, 1037
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 2 cut(s) 526, 1013
BsnI GGCC 2 cut(s) 676, 758
Bsp1286I GDGCHC 1 cut(s) 705
BspANI GGCC 2 cut(s) 676, 758
BspCNI CTCAG 7 cut(s) 424, 439, 451, 637, 856, 1178, 1390
BspLI GGNNCC 9 cut(s) 370, 534, 561, 588, 615, 642, 669, 696, 1008
BspMI ACCTGC 2 cut(s) 1402, 1449
BspQI GCTCTTC 1 cut(s) 1059
BspT107I GGYRCC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 1444
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 7 cut(s) 244, 268, 303, 417, 1031, 1059, 1548
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 5 cut(s) 96, 168, 671, 1344, 1527
BssT1I CCWWGG 3 cut(s) 96, 671, 1527
Bst2UI CCWGG 5 cut(s) 170, 683, 857, 1076, 1346
Bst4CI ACNGT 5 cut(s) 126, 651, 1024, 1229, 1519
Bst6I CTCTTC 3 cut(s) 375, 844, 1059
BstAFI CTTAAG 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 218
BstDEI CTNAG 8 cut(s) 432, 438, 447, 624, 753, 864, 1165, 1398
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 8 cut(s) 115, 136, 775, 829, 1013, 1048, 1063, 1363
BstHHI GCGC 1 cut(s) 1458
BstMAI GTCTC 1 cut(s) 428
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 79, 218, 1394
BstNI CCWGG 5 cut(s) 170, 683, 857, 1076, 1346
BstSCI CCNGG 6 cut(s) 168, 681, 855, 993, 1074, 1344
BstSFI CTRYAG 2 cut(s) 309, 813
BstV1I GCAGC 3 cut(s) 464, 1436, 1479
BstX2I RGATCY 7 cut(s) 319, 559, 586, 613, 640, 667, 694
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 7 cut(s) 319, 559, 586, 613, 640, 667, 694
Bsu36I CCTNAGG 2 cut(s) 624, 753
BsuRI GGCC 2 cut(s) 676, 758
BtsCI GGATG 8 cut(s) 115, 136, 775, 829, 1013, 1048, 1063, 1363
BtsIMutI CAGTG 8 cut(s) 237, 310, 424, 429, 480, 1020, 1042, 1052
BveI ACCTGC 2 cut(s) 1402, 1449
CfoI GCGC 1 cut(s) 1458
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 757, 1006
CsiI ACCWGGT 1 cut(s) 855
Csp6I GTAC 2 cut(s) 1162, 1292
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 4 cut(s) 635, 829, 968, 1316
CviQI GTAC 2 cut(s) 1162, 1292
DdeI CTNAG 8 cut(s) 432, 438, 447, 624, 753, 864, 1165, 1398
DraI TTTAAA 1 cut(s) 1554
DrdI GACNNNNNNGTC 2 cut(s) 442, 824
DseDI GACNNNNNNGTC 2 cut(s) 442, 824
Eam1104I CTCTTC 3 cut(s) 375, 844, 1059
EarI CTCTTC 3 cut(s) 375, 844, 1059
Eco130I CCWWGG 3 cut(s) 96, 671, 1527
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 1006
Eco57I CTGAAG 3 cut(s) 399, 504, 825
Eco81I CCTNAGG 2 cut(s) 624, 753
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 5 cut(s) 168, 681, 855, 1074, 1344
EcoT14I CCWWGG 3 cut(s) 96, 671, 1527
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 3 cut(s) 96, 671, 1527
FaeI CATG 4 cut(s) 638, 832, 971, 1319
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 1547, 1579
FaqI GGGAC 2 cut(s) 526, 1013
FatI CATG 4 cut(s) 634, 828, 967, 1315
FbaI TGATCA 2 cut(s) 964, 1417
Fnu4HI GCNGC 3 cut(s) 453, 1425, 1493
FokI GGATG 8 cut(s) 122, 143, 782, 836, 1000, 1035, 1070, 1370
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 3 cut(s) 453, 1425, 1493
FspBI CTAG 3 cut(s) 231, 323, 545
GlaI GCGC 1 cut(s) 1457
GluI GCNGC 3 cut(s) 453, 1425, 1493
GsaI CCCAGC 3 cut(s) 709, 736, 763
GsuI CTGGAG 6 cut(s) 704, 731, 758, 785, 812, 1215
HaeIII GGCC 2 cut(s) 676, 758
HapII CCGG 2 cut(s) 281, 995
HhaI GCGC 1 cut(s) 1458
Hin1II CATG 4 cut(s) 638, 832, 971, 1319
Hin6I GCGC 1 cut(s) 1456
HinP1I GCGC 1 cut(s) 1456
HincII GTYRAC 2 cut(s) 835, 1105
HindII GTYRAC 2 cut(s) 835, 1105
HindIII AAGCTT 2 cut(s) 1083, 1409
HpaII CCGG 2 cut(s) 281, 995
HphI GGTGA 4 cut(s) 200, 476, 1052, 1628
Hpy166II GTNNAC 5 cut(s) 251, 835, 1006, 1105, 1232
Hpy188I TCNGA 6 cut(s) 18, 448, 865, 1168, 1258, 1471
Hpy188III TCNNGA 9 cut(s) 335, 644, 698, 791, 1194, 1375, 1487, 1540, 1569
Hpy8I GTNNAC 5 cut(s) 251, 835, 1006, 1105, 1232
HpyAV CCTTC 3 cut(s) 43, 100, 332
HpyCH4III ACNGT 5 cut(s) 126, 651, 1024, 1229, 1519
HpyCH4IV ACGT 3 cut(s) 253, 1535, 1609
HpyCH4V TGCA 4 cut(s) 212, 634, 1124, 1495
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 218, 1394
HpyF3I CTNAG 8 cut(s) 432, 438, 447, 624, 753, 864, 1165, 1398
HpySE526I ACGT 3 cut(s) 253, 1535, 1609
Hsp92II CATG 4 cut(s) 638, 832, 971, 1319
HspAI GCGC 1 cut(s) 1456
Ksp22I TGATCA 2 cut(s) 964, 1417
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 4 cut(s) 70, 385, 850, 1603
Lsp1109I GCAGC 3 cut(s) 464, 1436, 1479
LweI GCATC 1 cut(s) 352
MabI ACCWGGT 1 cut(s) 855
MaeI CTAG 3 cut(s) 231, 323, 545
MaeII ACGT 3 cut(s) 253, 1535, 1609
MaeIII GTNAC 4 cut(s) 52, 427, 1519, 1559
MboII GAAGA 5 cut(s) 392, 831, 1076, 1223, 1226
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 7 cut(s) 319, 559, 586, 613, 640, 667, 694
MhlI GDGCHC 1 cut(s) 705
MlyI GAGTC 2 cut(s) 430, 1628
MmeI TCCRAC 3 cut(s) 108, 1072, 1411
MspA1I CMGCKG 3 cut(s) 709, 736, 763
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 2 cut(s) 281, 995
MspR9I CCNGG 6 cut(s) 170, 683, 857, 995, 1076, 1346
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 5 cut(s) 170, 683, 857, 1076, 1346
MwoI GCNNNNNNNGC 3 cut(s) 79, 218, 1394
NciI CCSGG 1 cut(s) 995
NlaIII CATG 4 cut(s) 638, 832, 971, 1319
NlaIV GGNNCC 9 cut(s) 370, 534, 561, 588, 615, 642, 669, 696, 1008
NmuCI GTSAC 2 cut(s) 427, 1519
PaqCI CACCTGC 2 cut(s) 1402, 1449
PceI AGGCCT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 1059
PfeI GAWTC 9 cut(s) 19, 721, 776, 899, 914, 1043, 1202, 1241, 1378
PflMI CCANNNNNTGG 1 cut(s) 1037
PkrI GCNGC 3 cut(s) 454, 1426, 1494
PleI GAGTC 2 cut(s) 430, 1627
PpsI GAGTC 2 cut(s) 430, 1627
PshBI ATTAAT 1 cut(s) 927
Psp1406I AACGTT 1 cut(s) 1535
Psp6I CCWGG 5 cut(s) 168, 681, 855, 1074, 1344
PspFI CCCAGC 3 cut(s) 705, 732, 759
PspGI CCWGG 5 cut(s) 168, 681, 855, 1074, 1344
PspN4I GGNNCC 9 cut(s) 370, 534, 561, 588, 615, 642, 669, 696, 1008
PspPI GGNCC 2 cut(s) 757, 1006
PsuI RGATCY 7 cut(s) 319, 559, 586, 613, 640, 667, 694
PvuII CAGCTG 3 cut(s) 709, 736, 763
RsaI GTAC 2 cut(s) 1163, 1293
RsaNI GTAC 2 cut(s) 1162, 1292
SapI GCTCTTC 1 cut(s) 1059
SatI GCNGC 3 cut(s) 453, 1425, 1493
Sau96I GGNCC 2 cut(s) 757, 1006
SchI GAGTC 2 cut(s) 430, 1628
ScrFI CCNGG 6 cut(s) 170, 683, 857, 995, 1076, 1346
SduI GDGCHC 1 cut(s) 705
SexAI ACCWGGT 1 cut(s) 855
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 2 cut(s) 309, 813
SinI GGWCC 1 cut(s) 1006
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SseBI AGGCCT 1 cut(s) 676
SspI AATATT 1 cut(s) 1366
SspMI CTAG 3 cut(s) 231, 323, 545
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 6 cut(s) 168, 681, 855, 993, 1074, 1344
StyI CCWWGG 3 cut(s) 96, 671, 1527
TaaI ACNGT 5 cut(s) 126, 651, 1024, 1229, 1519
TaiI ACGT 3 cut(s) 256, 1538, 1612
TaqI TCGA 2 cut(s) 164, 1568
TaqII GACCGA 1 cut(s) 45
TfiI GAWTC 9 cut(s) 19, 721, 776, 899, 914, 1043, 1202, 1241, 1378
TscAI CASTG 8 cut(s) 244, 310, 424, 436, 487, 1027, 1042, 1059
TseFI GTSAC 2 cut(s) 427, 1519
TseI GCWGC 3 cut(s) 452, 1424, 1492
Tsp45I GTSAC 2 cut(s) 427, 1519
TspDTI ATGAA 4 cut(s) 147, 900, 945, 1374
TspRI CASTG 8 cut(s) 244, 310, 424, 436, 487, 1027, 1042, 1059
Van91I CCANNNNNTGG 1 cut(s) 1037
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 1006
VspI ATTAAT 1 cut(s) 927
XagI CCTNNNNNAGG 1 cut(s) 47
XapI RAATTY 2 cut(s) 505, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XspI CTAG 3 cut(s) 231, 323, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.