Rw2G020010

Apoptotic chromatin condensation inducer in the nucleus

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
27109140 .. 27113963
4824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020010.1

Sequence Viewer

Length: 1638 bp
ATGAGGATCCAAAGCCCCAGCTGGAGAATGAGGATCCAGAGCCCATGCGGGAGAGTCTGGTTTCAAAGCCCCAGTTGGAGAATGAGGATCCAAAGCCCCAGCTGGAGAATGAGGATCCAGAGCCCACGGGAGAGTCTGGATTCAAAGCCCCAGTTGGAGAATGTTGATCCAAAGCCCCAGCTGGAGAGTGAGAGTTTAGATGCTACACCCAAGGATGCCGTGCTCGACTCTTCTGCCCCAAACTACCAGGTATCTGAGGTCAGCACTGTTTTAGGGTCTGAAGTAAACTATGATTATATTTCTACTGATACTGTGTCAATTAATGAAAAGATTGAACTAAAGGATAATATAATTGCTGATCATGTCAAATTAGAATTAGATGTTAAGCCGGAGATGGTGGACCCATCATCCAGTGCTGTTGTCCCAGTCAATGGTGATTCACATCCAATGGATGCTGAAGAGCCACCTGAGAGCAAGGCATCTGTTAGAGAGAAAGATGACAACTATGATACTAATGCAGACATTAGCAAGAAAAATGATAGTGTGGATGTGGGGTACTCAGAAAAATTAAATTTGGAGAGAAGTTCTGGAGATGATTCTATGGAAGAGGATGTGCTGGACAGTAAACAAATTGATTCAAAGTATAGTTCTGATTATGTGGGAGATAGGGTTGAGAAAACTGAAGAACCTATTGCATTGGAGGATAGTCATGTTGATGTTGTGGGAGATGATAATTCCTCTGATAAAATGGATACAAGTGTTGATAACAAGAATCATCCAGCTCTTCCTGCTGAGAAAAGAAAGCTTAATGATAAAGCAGCAGTTGTGACCAATGAGCCTGCTGTAAAGAGGCGCAGGTGGAACTCTGAAAACTTGAAAGTTCCAGAGCCACAAAACTCTATTCAAACACCTACCACCACACCCAAAGATACTTCTCAGACCCCCATTCTGAAGCGTAACTTTTCAAGATCGAACTCTACAATTGGTGAGGATATTCCCAAGGAACGTGTTGTTCCTCCATCGCAGAAGCCACCAACTAATTCCTTAAAGATTGATCATTTTTTGCGGCCTTTCACCCTGAAAGCTGTGCAAGAACTTCTTGGGAAAACTGGGAAGGTTACTGATTTCTGGATGGACCACATTAAGACCCATTGCTTTGTTACCTATTCATCTGTGGAAGAAGCCGTGCAGACACGGAATGCTGTGTATAACTTACAGTGGCCAACCAATGGAGGCCGCCTCTTAGTGGCGGACTTTGTTGATCCTCAGGAAGTACAAACCCGGGTTCAGAATCCTCAGACTCCTGCTACACCTGTGAGTGCTCCTGTTGCTCCTGCTTTCTCAGCCACTTCGCAGCATCAGCCTTCACCTCGTCTATCTAAGCAGCAACTACAGCAGCAGCTTCCACCACCCCCTTCTCTCCCCCCTCCGCCACCCCTGTCTACCCTTCCCCCAGCAAGAGAGCGGCTTCCTCTGCCTCCCCCACCTCCTCTCTCAGAGAAACTTGATCCCCCGATTGTCACTTTGGATGATCTCTTTCGAAAAACTAAAGCAACCCCTCGGATCTATTACTTACCTTTATCCCAAGAACAAGTAGAGGCAAAACTTGCAGCACAGGGCAGAAACCCTAAGCAGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

60.94

Weight (kDa)

5.27

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSB_motif PF16294 503 - 539 2.4e-13 RNSP1-SAP18 binding (RSB) motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 846
Acc36I ACCTGC 1 cut(s) 846
AccB7I CCANNNNNTGG 2 cut(s) 431, 1229
AccBSI CCGCTC 1 cut(s) 1465
AccI GTMKAC 1 cut(s) 1442
AciI CCGC 6 cut(s) 48, 1066, 1237, 1250, 1430, 1465
AcoI YGGCCR 1 cut(s) 1220
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 4 cut(s) 300, 477, 702, 971
AfaI GTAC 2 cut(s) 557, 1275
AfiI CCNNNNNNNGG 3 cut(s) 431, 1229, 1246
AflIII ACRYGT 1 cut(s) 1006
AgsI TTSAA 7 cut(s) 65, 144, 335, 639, 877, 905, 966
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 7 cut(s) 21, 102, 181, 782, 805, 1085, 1402
AluI AGCT 7 cut(s) 21, 102, 181, 782, 805, 1085, 1402
Alw21I GWGCWC 2 cut(s) 225, 1324
Ama87I CYCGRG 1 cut(s) 1281
AoxI GGCC 3 cut(s) 1067, 1220, 1234
ApeKI GCWGC 6 cut(s) 818, 1354, 1384, 1396, 1399, 1610
ApoI RAATTY 1 cut(s) 571
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 400, 1135
AsuC2I CCSGG 2 cut(s) 1282, 1283
AsuHPI GGTGA 4 cut(s) 446, 998, 1066, 1359
AsuII TTCGAA 1 cut(s) 1540
AvaI CYCGRG 1 cut(s) 1281
AvaII GGWCC 2 cut(s) 400, 1135
AxyI CCTNAGG 1 cut(s) 1266
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BalI TGGCCA 1 cut(s) 1222
BamHI GGATCC 4 cut(s) 6, 33, 87, 114
BanII GRGCYC 2 cut(s) 44, 125
Bbv12I GWGCWC 2 cut(s) 225, 1324
BbvI GCAGC 6 cut(s) 830, 1366, 1396, 1408, 1411, 1622
BccI CCATC 4 cut(s) 388, 412, 1027, 1126
BceAI ACGGC 2 cut(s) 203, 1169
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 2 cut(s) 358, 1054
BcnI CCSGG 2 cut(s) 1282, 1283
BfmI CTRYAG 1 cut(s) 1391
BfuAI ACCTGC 1 cut(s) 846
BfuI GTATCC 1 cut(s) 745
BisI GCNGC 9 cut(s) 819, 1067, 1237, 1355, 1385, 1397, 1400, 1466, 1611
BlsI GCNGC 9 cut(s) 820, 1068, 1238, 1356, 1386, 1398, 1401, 1467, 1612
Bme1390I CCNGG 3 cut(s) 248, 1282, 1283
Bme18I GGWCC 2 cut(s) 400, 1135
BmeT110I CYCGRG 1 cut(s) 1281
BmgT120I GGNCC 2 cut(s) 400, 1135
BmiI GGNNCC 5 cut(s) 8, 35, 89, 116, 402
BmrFI CCNGG 3 cut(s) 248, 1282, 1283
BmrI ACTGGG 4 cut(s) 66, 145, 419, 1119
BmsI GCATC 5 cut(s) 190, 205, 442, 488, 1366
BmuI ACTGGG 4 cut(s) 66, 145, 419, 1119
BplI GAGNNNNNCTC 2 cut(s) 1224, 1256
BpmI CTGGAG 4 cut(s) 43, 124, 203, 609
Bpu10I CCTNAGC 1 cut(s) 1629
Bpu14I TTCGAA 1 cut(s) 1540
BpuMI CCSGG 2 cut(s) 1282, 1283
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 125, 210, 999, 1281, 1559
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 1229, 1246
Bse1I ACTGG 5 cut(s) 72, 151, 411, 425, 1114
Bse21I CCTNAGG 1 cut(s) 1266
Bse3DI GCAATG 1 cut(s) 1150
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 5 cut(s) 125, 210, 999, 1281, 1559
BseGI GGATG 9 cut(s) 220, 407, 442, 457, 553, 616, 775, 1137, 1534
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 3 cut(s) 431, 1229, 1246
BseMI GCAATG 1 cut(s) 1150
BseMII CTCAG 9 cut(s) 246, 459, 573, 783, 950, 1280, 1310, 1356, 1509
BseNI ACTGG 5 cut(s) 72, 151, 411, 425, 1114
BseRI GAGGAG 1 cut(s) 1479
BseXI GCAGC 6 cut(s) 830, 1366, 1396, 1408, 1411, 1622
BseYI CCCAGC 4 cut(s) 17, 98, 177, 1453
BsgI GTGCAG 1 cut(s) 1208
BshFI GGCC 3 cut(s) 1069, 1222, 1236
BsiHKAI GWGCWC 2 cut(s) 225, 1324
BsiHKCI CYCGRG 1 cut(s) 1281
BsiSI CCGG 2 cut(s) 389, 1282
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 3 cut(s) 431, 1229, 1246
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 1204
BsnI GGCC 3 cut(s) 1069, 1222, 1236
BsoBI CYCGRG 1 cut(s) 1281
Bsp119I TTCGAA 1 cut(s) 1540
Bsp1286I GDGCHC 4 cut(s) 44, 125, 225, 1324
BspACI CCGC 6 cut(s) 48, 1066, 1237, 1250, 1430, 1465
BspANI GGCC 3 cut(s) 1069, 1222, 1236
BspCNI CTCAG 9 cut(s) 247, 460, 572, 784, 949, 1279, 1309, 1355, 1508
BspLI GGNNCC 5 cut(s) 8, 35, 89, 116, 402
BspMI ACCTGC 1 cut(s) 846
BspQI GCTCTTC 2 cut(s) 453, 789
BspT104I TTCGAA 1 cut(s) 1540
BsrBI CCGCTC 1 cut(s) 1465
BsrDI GCAATG 1 cut(s) 1150
BsrI ACTGG 5 cut(s) 72, 151, 411, 425, 1114
BssECI CCNNGG 5 cut(s) 125, 210, 999, 1281, 1559
BssT1I CCWWGG 2 cut(s) 210, 999
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 4 cut(s) 268, 313, 623, 1218
Bst6I CTCTTC 4 cut(s) 235, 453, 600, 789
BstAPI GCANNNNNTGC 1 cut(s) 1607
BstBI TTCGAA 1 cut(s) 1540
BstC8I GCNNGC 1 cut(s) 840
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 9 cut(s) 220, 407, 442, 457, 553, 616, 775, 1137, 1534
BstHHI GCGC 1 cut(s) 855
BstMWI GCNNNNNNNGC 7 cut(s) 788, 1328, 1343, 1360, 1393, 1474, 1607
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 246, 1280, 1281
BstSFI CTRYAG 1 cut(s) 1391
BstV1I GCAGC 6 cut(s) 830, 1366, 1396, 1408, 1411, 1622
BstX2I RGATCY 5 cut(s) 6, 33, 87, 114, 1563
BstYI RGATCY 5 cut(s) 6, 33, 87, 114, 1563
Bsu36I CCTNAGG 1 cut(s) 1266
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 1069, 1222, 1236
BtgI CCRYGG 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 1005
BtsCI GGATG 9 cut(s) 220, 407, 442, 457, 553, 616, 775, 1137, 1534
BtsIMutI CAGTG 3 cut(s) 264, 418, 1223
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 1 cut(s) 840
CfoI GCGC 1 cut(s) 855
Cfr13I GGNCC 2 cut(s) 400, 1135
Cfr9I CCCGGG 1 cut(s) 1281
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 2 cut(s) 556, 1274
CviAII CATG 3 cut(s) 45, 362, 710
CviQI GTAC 2 cut(s) 556, 1274
EaeI YGGCCR 1 cut(s) 1220
Eam1104I CTCTTC 4 cut(s) 235, 453, 600, 789
EarI CTCTTC 4 cut(s) 235, 453, 600, 789
EciI GGCGGA 2 cut(s) 1265, 1419
Eco130I CCWWGG 2 cut(s) 210, 999
Eco24I GRGCYC 2 cut(s) 44, 125
Eco47I GGWCC 2 cut(s) 400, 1135
Eco57I CTGAAG 4 cut(s) 300, 477, 702, 971
Eco81I CCTNAGG 1 cut(s) 1266
Eco88I CYCGRG 1 cut(s) 1281
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 210, 999
EcoT38I GRGCYC 2 cut(s) 44, 125
ErhI CCWWGG 2 cut(s) 210, 999
FaeI CATG 3 cut(s) 48, 365, 713
FalI AAGNNNNNCTT 4 cut(s) 944, 976, 1083, 1115
FaqI GGGAC 1 cut(s) 407
FatI CATG 3 cut(s) 44, 361, 709
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 2 cut(s) 358, 1054
FblI GTMKAC 1 cut(s) 1442
Fnu4HI GCNGC 9 cut(s) 819, 1067, 1237, 1355, 1385, 1397, 1400, 1466, 1611
FokI GGATG 9 cut(s) 227, 394, 429, 464, 560, 623, 762, 1144, 1541
FriOI GRGCYC 2 cut(s) 44, 125
Fsp4HI GCNGC 9 cut(s) 819, 1067, 1237, 1355, 1385, 1397, 1400, 1466, 1611
GlaI GCGC 1 cut(s) 854
GluI GCNGC 9 cut(s) 819, 1067, 1237, 1355, 1385, 1397, 1400, 1466, 1611
GsaI CCCAGC 4 cut(s) 21, 102, 181, 1457
GsuI CTGGAG 4 cut(s) 43, 124, 203, 609
HaeIII GGCC 3 cut(s) 1069, 1222, 1236
HapII CCGG 2 cut(s) 389, 1282
HhaI GCGC 1 cut(s) 855
Hin1II CATG 3 cut(s) 48, 365, 713
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HindIII AAGCTT 1 cut(s) 803
HpaII CCGG 2 cut(s) 389, 1282
HphI GGTGA 4 cut(s) 446, 998, 1066, 1359
Hpy166II GTNNAC 4 cut(s) 286, 400, 626, 1443
Hpy188III TCNNGA 8 cut(s) 37, 118, 137, 588, 884, 966, 1129, 1268
Hpy8I GTNNAC 4 cut(s) 286, 400, 626, 1443
HpyAV CCTTC 4 cut(s) 1108, 1374, 1425, 1457
HpyCH4III ACNGT 4 cut(s) 268, 313, 623, 1218
HpyCH4IV ACGT 1 cut(s) 1006
HpyCH4V TGCA 5 cut(s) 518, 695, 1090, 1189, 1610
HpyF10VI GCNNNNNNNGC 7 cut(s) 788, 1328, 1343, 1360, 1393, 1474, 1607
HpySE526I ACGT 1 cut(s) 1006
Hsp92II CATG 3 cut(s) 48, 365, 713
HspAI GCGC 1 cut(s) 853
Ksp22I TGATCA 2 cut(s) 358, 1054
LguI GCTCTTC 2 cut(s) 453, 789
LmnI GCTCC 2 cut(s) 1327, 1336
Lsp1109I GCAGC 6 cut(s) 830, 1366, 1396, 1408, 1411, 1622
LweI GCATC 5 cut(s) 190, 205, 442, 488, 1366
MabI ACCWGGT 1 cut(s) 246
MaeII ACGT 1 cut(s) 1006
MaeIII GTNAC 5 cut(s) 826, 956, 1117, 1159, 1519
MbiI CCGCTC 1 cut(s) 1465
MboII GAAGA 6 cut(s) 222, 470, 617, 695, 776, 1190
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 5 cut(s) 6, 33, 87, 114, 1563
MhlI GDGCHC 4 cut(s) 44, 125, 225, 1324
MlsI TGGCCA 1 cut(s) 1222
MluNI TGGCCA 1 cut(s) 1222
MlyI GAGTC 4 cut(s) 63, 142, 221, 1294
MmeI TCCRAC 2 cut(s) 56, 135
Mox20I TGGCCA 1 cut(s) 1222
MscI TGGCCA 1 cut(s) 1222
MseI TTAA 6 cut(s) 321, 384, 569, 807, 1046, 1143
MslI CAYNNNNRTG 1 cut(s) 714
Msp20I TGGCCA 1 cut(s) 1222
MspA1I CMGCKG 3 cut(s) 21, 102, 181
MspI CCGG 2 cut(s) 389, 1282
MspR9I CCNGG 3 cut(s) 248, 1282, 1283
MunI CAATTG 1 cut(s) 981
Mva1269I GAATGC 1 cut(s) 1204
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 7 cut(s) 788, 1328, 1343, 1360, 1393, 1474, 1607
NciI CCSGG 2 cut(s) 1282, 1283
NlaIII CATG 3 cut(s) 48, 365, 713
NlaIV GGNNCC 5 cut(s) 8, 35, 89, 116, 402
NmuCI GTSAC 2 cut(s) 826, 1519
NspV TTCGAA 1 cut(s) 1540
PaqCI CACCTGC 1 cut(s) 846
PciSI GCTCTTC 2 cut(s) 453, 789
PctI GAATGC 1 cut(s) 1204
PfeI GAWTC 6 cut(s) 140, 437, 596, 635, 772, 1291
PflMI CCANNNNNTGG 2 cut(s) 431, 1229
PkrI GCNGC 9 cut(s) 820, 1068, 1238, 1356, 1386, 1398, 1401, 1467, 1612
PleI GAGTC 4 cut(s) 62, 141, 221, 1294
PpsI GAGTC 4 cut(s) 62, 141, 221, 1294
PshBI ATTAAT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 4 cut(s) 17, 98, 177, 1453
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 5 cut(s) 8, 35, 89, 116, 402
PspPI GGNCC 2 cut(s) 400, 1135
PsuI RGATCY 5 cut(s) 6, 33, 87, 114, 1563
PvuII CAGCTG 3 cut(s) 21, 102, 181
RsaI GTAC 2 cut(s) 557, 1275
RsaNI GTAC 2 cut(s) 556, 1274
RseI CAYNNNNRTG 1 cut(s) 714
SapI GCTCTTC 2 cut(s) 453, 789
SaqAI TTAA 6 cut(s) 321, 384, 569, 807, 1046, 1143
SatI GCNGC 9 cut(s) 819, 1067, 1237, 1355, 1385, 1397, 1400, 1466, 1611
Sau96I GGNCC 2 cut(s) 400, 1135
SchI GAGTC 4 cut(s) 63, 142, 221, 1294
ScrFI CCNGG 3 cut(s) 248, 1282, 1283
SduI GDGCHC 4 cut(s) 44, 125, 225, 1324
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 5 cut(s) 190, 205, 442, 488, 1366
SfcI CTRYAG 1 cut(s) 1391
SfuI TTCGAA 1 cut(s) 1540
SinI GGWCC 2 cut(s) 400, 1135
SmaI CCCGGG 1 cut(s) 1283
SmiMI CAYNNNNRTG 1 cut(s) 714
SsiI CCGC 6 cut(s) 48, 1066, 1237, 1250, 1430, 1465
StyD4I CCNGG 3 cut(s) 246, 1280, 1281
StyI CCWWGG 2 cut(s) 210, 999
TaaI ACNGT 4 cut(s) 268, 313, 623, 1218
TaiI ACGT 1 cut(s) 1009
TaqI TCGA 3 cut(s) 225, 971, 1540
TatI WGTACW 1 cut(s) 1273
TauI GCSGC 3 cut(s) 1069, 1239, 1468
TfiI GAWTC 6 cut(s) 140, 437, 596, 635, 772, 1291
Tru1I TTAA 6 cut(s) 321, 384, 569, 807, 1046, 1143
Tru9I TTAA 6 cut(s) 321, 384, 569, 807, 1046, 1143
TscAI CASTG 3 cut(s) 271, 418, 1223
TseFI GTSAC 2 cut(s) 826, 1519
TseI GCWGC 6 cut(s) 818, 1354, 1384, 1396, 1399, 1610
Tsp45I GTSAC 2 cut(s) 826, 1519
TspDTI ATGAA 2 cut(s) 339, 1158
TspGWI ACGGA 1 cut(s) 1210
TspMI CCCGGG 1 cut(s) 1281
TspRI CASTG 3 cut(s) 271, 418, 1223
Van91I CCANNNNNTGG 2 cut(s) 431, 1229
VpaK11BI GGWCC 2 cut(s) 400, 1135
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 571
XmaI CCCGGG 1 cut(s) 1281
XmiI GTMKAC 1 cut(s) 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.