Rmu_ssc0000197.1_g000093

Apoptotic chromatin condensation inducer in the nucleus

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000197.1
Physical Location & Seq
Reverse (-)
400396 .. 403314
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000197.1_g000093.1.cds

Sequence Viewer

Length: 1644 bp
atgtcatcaccatatcccaaacttgacaatcgaacaattgatcagtggaaggttactgagttgaaagaagagcttaagaggcggaaattgacaaccaagggtttgaaggacgatttgatcaaacgtttggatgaggcaattcgaattgaaagggaaaatgccgagaggcttgaaagggaaaatgctgagaggcttgaaagagagaatgccgagaggctcgaaagggagaatgctgagaggctcgaaagggaaaatgctgagaggctagcaagggaaaatgctgagaggctggaaagggaaattgccgagaagattgtgagggaaaatgccgagaagaatatagagggtaatgctgagaaggtggataatggttttaatgctgatccggagcgacatgcagtggatgctaaaacaactacaggcttcattgatgggcaggaaaaggctgaaaacgttgtcattggtggtagtgcagcagcattgaatcaaggcaatatcgaagaggattacgttcttgtggataaacatgatgctgctattgttggagaggagctgattgttcaatcaactactgttgaaaccactgttactgtcactgagaatgtggtagaatatttagatttaggtgggcaaggttcacagaacactgaagcaaagaagacgaatgagaattcaaaaccacagctagagaatgaggatccaaagccccagctggagaatgaggatccagagcccatgcgggagagtctggtttcaaagccccagttggagaatgaggatccaaagccccagctggagaatgaggatccagagcccatgcgggagagtctggattcaaagccccagttggagaatgttgatccaaagccccagctggagagtgagagtttagatgctacacccaaggatgccgtgctcgactcttctgccccaaactaccaggtatctgaggtcagcactgttttagggtctgaagtaaactatgattatatttctactgatactgtgtcaattaatgaaaagattgaactaaaggataatataattgctgatcatgtcaaattagaattagatgttaagccggagatggtggacccatcatccagtgttgttgtcccagtcaatggtgattcacatccaatggatgctgaagagccacctgagagcaaggcatctgttagagagaaagatgacaactatgatactaatgcagacattagcaagaaaaatgatagtgtggatgtggggtactcagaaaaattaaatttggagagaagttctggagatgattctatggaagaggatgtgctggacagtaaacaaattgattcaaagtatagttctgattatgtgggagatagggttgagaaaactgaagaacctattgcattggaggatagtcatgttgatgttgtgggagatgataattcctctgataaaatggatacaagtgttgataacaagaatcatccagctcttcctgctgagaaaagaaagcttaatggtcatctactattcactgctttttatgtgtattttcactctcttggtcaccggcacagtgtatttcatgtcctgggtcgccatgtgtcaccttgggtcactttctgggtcaccctggtgacctgcaatctaacttggtga
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

61.71

Weight (kDa)

4.54

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1634
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 3 cut(s) 82, 739, 820
AclI AACGTT 2 cut(s) 124, 453
AcsI RAATTY 2 cut(s) 670, 1264
AcuI CTGAAG 4 cut(s) 669, 993, 1170, 1395
AfaI GTAC 1 cut(s) 1250
AfiI CCNNNNNNNGG 1 cut(s) 1124
AflII CTTAAG 1 cut(s) 74
AjnI CCWGG 3 cut(s) 939, 1575, 1617
AleI CACNNNNGTG 1 cut(s) 1619
AluBI AGCT 8 cut(s) 73, 553, 685, 712, 793, 874, 1475, 1498
AluI AGCT 8 cut(s) 73, 553, 685, 712, 793, 874, 1475, 1498
Alw21I GWGCWC 1 cut(s) 918
Aor13HI TCCGGA 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 473, 476, 533
ApoI RAATTY 2 cut(s) 670, 1264
AseI ATTAAT 1 cut(s) 1014
AspS9I GGNCC 1 cut(s) 1093
AsuHPI GGTGA 5 cut(s) 1139, 1544, 1584, 1606, 1633
AsuII TTCGAA 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 1093
BaeI ACNNNNGTAYC 2 cut(s) 1437, 1470
BamHI GGATCC 4 cut(s) 697, 724, 778, 805
BanII GRGCYC 2 cut(s) 735, 816
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 3 cut(s) 485, 488, 520
BccI CCATC 3 cut(s) 425, 1081, 1105
BceAI ACGGC 1 cut(s) 896
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciT130I CCWGG 3 cut(s) 941, 1577, 1619
BciVI GTATCC 1 cut(s) 1438
BclI TGATCA 3 cut(s) 40, 117, 1051
BfaI CTAG 2 cut(s) 266, 686
BfmI CTRYAG 1 cut(s) 417
BfrI CTTAAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 1634
BfuI GTATCC 1 cut(s) 1438
BisI GCNGC 3 cut(s) 474, 477, 534
BlsI GCNGC 3 cut(s) 475, 478, 535
Bme1390I CCNGG 3 cut(s) 941, 1577, 1619
Bme18I GGWCC 1 cut(s) 1093
BmgT120I GGNCC 1 cut(s) 1093
BmiI GGNNCC 5 cut(s) 699, 726, 780, 807, 1095
BmrFI CCNGG 3 cut(s) 941, 1577, 1619
BmrI ACTGGG 3 cut(s) 757, 838, 1112
BmsI GCATC 6 cut(s) 394, 520, 883, 898, 1135, 1181
BmtI GCTAGC 1 cut(s) 269
BmuI ACTGGG 3 cut(s) 757, 838, 1112
BpiI GAAGAC 1 cut(s) 665
BpmI CTGGAG 4 cut(s) 734, 815, 896, 1302
Bpu14I TTCGAA 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 1134
BsaJI CCNNGG 5 cut(s) 96, 903, 1576, 1595, 1617
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 1347, 1377
Bsc4I CCNNNNNNNGG 1 cut(s) 1124
Bse118I RCCGGY 1 cut(s) 1554
Bse1I ACTGG 4 cut(s) 763, 844, 1104, 1118
Bse8I GATNNNNATC 1 cut(s) 1134
BseAI TCCGGA 1 cut(s) 385
BseBI CCWGG 3 cut(s) 941, 1577, 1619
BseDI CCNNGG 5 cut(s) 96, 903, 1576, 1595, 1617
BseGI GGATG 9 cut(s) 136, 409, 913, 1100, 1135, 1150, 1246, 1309, 1468
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 1 cut(s) 1124
BseNI ACTGG 4 cut(s) 763, 844, 1104, 1118
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 3 cut(s) 485, 488, 520
BseYI CCCAGC 3 cut(s) 708, 789, 870
BsgI GTGCAG 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 918
BsiSI CCGG 3 cut(s) 386, 1082, 1555
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 1 cut(s) 1124
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 2 cut(s) 211, 235
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 3 cut(s) 735, 816, 918
Bsp13I TCCGGA 1 cut(s) 385
Bsp143I GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
BspACI CCGC 3 cut(s) 82, 739, 820
BspEI TCCGGA 1 cut(s) 385
BspLI GGNNCC 5 cut(s) 699, 726, 780, 807, 1095
BspMI ACCTGC 1 cut(s) 1634
BspOI GCTAGC 1 cut(s) 269
BspQI GCTCTTC 3 cut(s) 63, 1146, 1482
BspT104I TTCGAA 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 1554
BsrI ACTGG 4 cut(s) 763, 844, 1104, 1118
BssAI RCCGGY 1 cut(s) 1554
BssECI CCNNGG 5 cut(s) 96, 903, 1576, 1595, 1617
BssMI GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
BssT1I CCWWGG 3 cut(s) 96, 903, 1595
Bst2UI CCWGG 3 cut(s) 941, 1577, 1619
Bst4CI ACNGT 7 cut(s) 574, 586, 592, 961, 1006, 1316, 1562
Bst6I CTCTTC 6 cut(s) 63, 495, 928, 1146, 1293, 1482
BstAFI CTTAAG 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 267
BstEII GGTNACC 3 cut(s) 1550, 1612, 1621
BstF5I GGATG 9 cut(s) 136, 409, 913, 1100, 1135, 1150, 1246, 1309, 1468
BstKTI GATC 9 cut(s) 43, 120, 385, 700, 727, 781, 808, 862, 1054
BstMBI GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 79, 404, 1481
BstNI CCWGG 3 cut(s) 941, 1577, 1619
BstNSI RCATGY 1 cut(s) 398
BstPI GGTNACC 3 cut(s) 1550, 1612, 1621
BstSCI CCNGG 3 cut(s) 939, 1575, 1617
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 485, 488, 520
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 4 cut(s) 697, 724, 778, 805
BstYI RGATCY 4 cut(s) 697, 724, 778, 805
BsuI GTATCC 1 cut(s) 1438
BtsCI GGATG 9 cut(s) 136, 409, 913, 1100, 1135, 1150, 1246, 1309, 1468
BtsI GCAGTG 2 cut(s) 405, 1518
BtsIMutI CAGTG 9 cut(s) 50, 405, 582, 594, 645, 957, 1111, 1518, 1567
BveI ACCTGC 1 cut(s) 1634
Cac8I GCNNGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 1554
Cfr13I GGNCC 1 cut(s) 1093
CsiI ACCWGGT 1 cut(s) 939
Csp6I GTAC 1 cut(s) 1249
CviAII CATG 8 cut(s) 395, 527, 736, 817, 1055, 1403, 1571, 1586
CviQI GTAC 1 cut(s) 1249
DpnI GATC 9 cut(s) 42, 119, 384, 699, 726, 780, 807, 861, 1053
DpnII GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
Eam1104I CTCTTC 6 cut(s) 63, 495, 928, 1146, 1293, 1482
EarI CTCTTC 6 cut(s) 63, 495, 928, 1146, 1293, 1482
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 96, 903, 1595
Eco24I GRGCYC 2 cut(s) 735, 816
Eco47I GGWCC 1 cut(s) 1093
Eco57I CTGAAG 4 cut(s) 669, 993, 1170, 1395
Eco91I GGTNACC 3 cut(s) 1550, 1612, 1621
EcoO65I GGTNACC 3 cut(s) 1550, 1612, 1621
EcoRI GAATTC 1 cut(s) 670
EcoRII CCWGG 3 cut(s) 939, 1575, 1617
EcoT14I CCWWGG 3 cut(s) 96, 903, 1595
EcoT38I GRGCYC 2 cut(s) 735, 816
ErhI CCWWGG 3 cut(s) 96, 903, 1595
FaeI CATG 8 cut(s) 398, 530, 739, 820, 1058, 1406, 1574, 1589
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 1100
FatI CATG 8 cut(s) 394, 526, 735, 816, 1054, 1402, 1570, 1585
FauI CCCGC 2 cut(s) 732, 813
FbaI TGATCA 3 cut(s) 40, 117, 1051
Fnu4HI GCNGC 3 cut(s) 474, 477, 534
FokI GGATG 9 cut(s) 143, 416, 920, 1087, 1122, 1157, 1253, 1316, 1455
FriOI GRGCYC 2 cut(s) 735, 816
Fsp4HI GCNGC 3 cut(s) 474, 477, 534
FspBI CTAG 2 cut(s) 266, 686
GluI GCNGC 3 cut(s) 474, 477, 534
GsaI CCCAGC 3 cut(s) 712, 793, 874
GsuI CTGGAG 4 cut(s) 734, 815, 896, 1302
HapII CCGG 3 cut(s) 386, 1082, 1555
Hin1II CATG 8 cut(s) 398, 530, 739, 820, 1058, 1406, 1574, 1589
HindIII AAGCTT 1 cut(s) 1496
HinfI GANTC 9 cut(s) 484, 745, 826, 833, 920, 1130, 1289, 1328, 1465
HpaII CCGG 3 cut(s) 386, 1082, 1555
HphI GGTGA 5 cut(s) 1139, 1544, 1584, 1606, 1633
Hpy166II GTNNAC 4 cut(s) 638, 979, 1093, 1319
Hpy188I TCNGA 5 cut(s) 949, 973, 1255, 1345, 1435
Hpy188III TCNNGA 5 cut(s) 386, 728, 809, 830, 1281
Hpy8I GTNNAC 4 cut(s) 638, 979, 1093, 1319
HpyAV CCTTC 3 cut(s) 43, 100, 352
HpyCH4III ACNGT 7 cut(s) 574, 586, 592, 961, 1006, 1316, 1562
HpyCH4IV ACGT 3 cut(s) 124, 453, 510
HpyCH4V TGCA 5 cut(s) 398, 473, 1211, 1388, 1629
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 404, 1481
HpySE526I ACGT 3 cut(s) 124, 453, 510
Hsp92II CATG 8 cut(s) 398, 530, 739, 820, 1058, 1406, 1574, 1589
Kpn2I TCCGGA 1 cut(s) 385
Ksp22I TGATCA 3 cut(s) 40, 117, 1051
Kzo9I GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
LguI GCTCTTC 3 cut(s) 63, 1146, 1482
LmnI GCTCC 2 cut(s) 388, 550
Lsp1109I GCAGC 3 cut(s) 485, 488, 520
LweI GCATC 6 cut(s) 394, 520, 883, 898, 1135, 1181
MabI ACCWGGT 1 cut(s) 939
MaeI CTAG 2 cut(s) 266, 686
MaeII ACGT 3 cut(s) 124, 453, 510
MaeIII GTNAC 8 cut(s) 52, 586, 592, 1550, 1590, 1600, 1612, 1621
MalI GATC 9 cut(s) 42, 119, 384, 699, 726, 780, 807, 861, 1053
MboI GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 4 cut(s) 697, 724, 778, 805
MhlI GDGCHC 3 cut(s) 735, 816, 918
MlyI GAGTC 3 cut(s) 754, 835, 914
MmeI TCCRAC 3 cut(s) 523, 747, 828
MroI TCCGGA 1 cut(s) 385
MseI TTAA 6 cut(s) 75, 375, 1014, 1077, 1262, 1500
MslI CAYNNNNRTG 2 cut(s) 1407, 1619
MspA1I CMGCKG 3 cut(s) 712, 793, 874
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 3 cut(s) 386, 1082, 1555
MspR9I CCNGG 3 cut(s) 941, 1577, 1619
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 2 cut(s) 211, 235
MvaI CCWGG 3 cut(s) 941, 1577, 1619
MwoI GCNNNNNNNGC 3 cut(s) 79, 404, 1481
NdeII GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
NheI GCTAGC 1 cut(s) 265
NlaIII CATG 8 cut(s) 398, 530, 739, 820, 1058, 1406, 1574, 1589
NlaIV GGNNCC 5 cut(s) 699, 726, 780, 807, 1095
NmeAIII GCCGAG 4 cut(s) 187, 235, 331, 355
NmuCI GTSAC 6 cut(s) 592, 1550, 1590, 1600, 1612, 1621
NspI RCATGY 1 cut(s) 398
NspV TTCGAA 1 cut(s) 142
OliI CACNNNNGTG 1 cut(s) 1619
PciSI GCTCTTC 3 cut(s) 63, 1146, 1482
PctI GAATGC 2 cut(s) 211, 235
PfeI GAWTC 6 cut(s) 484, 833, 1130, 1289, 1328, 1465
PflMI CCANNNNNTGG 1 cut(s) 1124
PkrI GCNGC 3 cut(s) 475, 478, 535
PleI GAGTC 3 cut(s) 753, 834, 914
PpsI GAGTC 3 cut(s) 753, 834, 914
PshBI ATTAAT 1 cut(s) 1014
Psp1406I AACGTT 2 cut(s) 124, 453
Psp6I CCWGG 3 cut(s) 939, 1575, 1617
PspEI GGTNACC 3 cut(s) 1550, 1612, 1621
PspFI CCCAGC 3 cut(s) 708, 789, 870
PspGI CCWGG 3 cut(s) 939, 1575, 1617
PspN4I GGNNCC 5 cut(s) 699, 726, 780, 807, 1095
PspPI GGNCC 1 cut(s) 1093
PsuI RGATCY 4 cut(s) 697, 724, 778, 805
PvuII CAGCTG 3 cut(s) 712, 793, 874
RsaI GTAC 1 cut(s) 1250
RsaNI GTAC 1 cut(s) 1249
RseI CAYNNNNRTG 2 cut(s) 1407, 1619
SapI GCTCTTC 3 cut(s) 63, 1146, 1482
SaqAI TTAA 6 cut(s) 75, 375, 1014, 1077, 1262, 1500
SatI GCNGC 3 cut(s) 474, 477, 534
Sau3AI GATC 9 cut(s) 40, 117, 382, 697, 724, 778, 805, 859, 1051
Sau96I GGNCC 1 cut(s) 1093
SchI GAGTC 3 cut(s) 754, 835, 914
ScrFI CCNGG 3 cut(s) 941, 1577, 1619
SduI GDGCHC 3 cut(s) 735, 816, 918
SexAI ACCWGGT 1 cut(s) 939
SfaNI GCATC 6 cut(s) 394, 520, 883, 898, 1135, 1181
SfcI CTRYAG 1 cut(s) 417
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 1093
SmiMI CAYNNNNRTG 2 cut(s) 1407, 1619
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SsiI CCGC 3 cut(s) 82, 739, 820
SspI AATATT 1 cut(s) 614
SspMI CTAG 2 cut(s) 266, 686
StyD4I CCNGG 3 cut(s) 939, 1575, 1617
StyI CCWWGG 3 cut(s) 96, 903, 1595
TaaI ACNGT 7 cut(s) 574, 586, 592, 961, 1006, 1316, 1562
TaiI ACGT 3 cut(s) 127, 456, 513
TaqI TCGA 6 cut(s) 31, 142, 219, 243, 498, 918
TfiI GAWTC 6 cut(s) 484, 833, 1130, 1289, 1328, 1465
Tru1I TTAA 6 cut(s) 75, 375, 1014, 1077, 1262, 1500
Tru9I TTAA 6 cut(s) 75, 375, 1014, 1077, 1262, 1500
TscAI CASTG 9 cut(s) 50, 405, 589, 601, 652, 964, 1111, 1525, 1567
TseFI GTSAC 6 cut(s) 592, 1550, 1590, 1600, 1612, 1621
TseI GCWGC 3 cut(s) 473, 476, 533
Tsp45I GTSAC 6 cut(s) 592, 1550, 1590, 1600, 1612, 1621
TspDTI ATGAA 3 cut(s) 415, 1032, 1559
TspRI CASTG 9 cut(s) 50, 405, 589, 601, 652, 964, 1111, 1525, 1567
Van91I CCANNNNNTGG 1 cut(s) 1124
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 1093
VspI ATTAAT 1 cut(s) 1014
XapI RAATTY 2 cut(s) 670, 1264
XceI RCATGY 1 cut(s) 398
XspI CTAG 2 cut(s) 266, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.