Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000197.1

Orthogroup ID

OG0008982

Physical Location & Seq

Genomic Coordinates Reverse (-)

370170 .. 373297

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000197.1_g000087.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgatttttcttttgttcattcctatagataaagcagcagttgtgaccaatgagcctgctgtaaagaggcgcaggtggaactctgaaaacttgaaagttccagagccacaaaactctattcaaacacctaccaccacacccaaagatacttctcagacccccattctgaagcgtaacttttcaagatcaaactctacaattggtgaggatattcccaaggaacgtgttgttcctccatcgcagaagccaccaactaattccttaaagattgatcattttttgcggcctttcaccctgaaagctgtgcaagaacttcttgggaaaactgggaaggttactgatttctggatggaccacattaagacccattgctttgttacctattcatctgtggaagaagccgtggagacacggaatgctgtgtataacttacagtggccaaccaatggaggccgcctcttagtggcggactttgttgatcctcaggaagtacaaacccgggttcagaatcctcagactcctgctacacctgtgagtgctcctgttgctcctgctttctcagccacttcgcagcatcagccttcacctcgtctatctaagcagcaactacagcagcagcttccaccacccccttctctcccccctccgccacccctgtctacccttcccccagcaagagagcggcttcctctgcctcccccacctcctctctcagagaaacttgatcctccgattgtcactttggatgatctctttcgaaaaactaaagcaacccctcggatctattacttacctttatcccaagaacaagtagaggcaaaacttgcagcacagggcagaaaccctaagcaaaaacaaaaaaacttgaagaaaggagttgctgcgctgctactcttccttgcttgtgcagccctatgcttggctgcttctgatgctactgctgcagagcctccgaaactatctgggcacgctaaggtgcacaagtgcattgctggtttccacactgcaagggggacttgtctgaaggagatctatgcatcttattggaatcacaaactcaatattggagaagattgctgcaaggccattaaggaagcagatgatgattgtgccgagaccattttcagtcacttcaagaaccctacttatgttcttttgttgaaggagcattgctcaaagaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002262 GO:0002376 GO:0002520 GO:0002682 GO:0002684 GO:0002761 GO:0002763 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006323 GO:0006915 GO:0006921 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016043 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022411 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030261 GO:0030262 GO:0030263 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033119 GO:0034101 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045637 GO:0045639 GO:0045655 GO:0045657 GO:0045934 GO:0048024 GO:0048025 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050684 GO:0050686 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061574 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0080090 GO:0097194 GO:1902105 GO:1902107 GO:1903311 GO:1903312 GO:1903706 GO:1903708 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RSB_motif SAP

Protein Analysis

394

Amino Acids

43.73

Weight (kDa)

9.32

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39680 AT4G39680
fragaria_vesca	FvH4_1g21740 FvH4_1g21740 FvH4_1g21740
malus_domestica	MD01G1022700.v1.1 MD15G1329800.v1.1
prunus_persica	Prupe.6G178400_v2.0.a1
pyrus_communis	pycom01g05110 pycom15g29560
rosa_chinensis	RchiOBHm_Chr2g0115611
rosa_laevigata	RLG00000018197
rosa_multiflora	Rmu_ssc0000197.1_g000087 Rmu_ssc0000197.1_g000093
rosa_roxburghii	Rroxscaffold_2G00128060 Rroxscaffold_2G00128930
rosa_rugosa	Rorug02G0198500
rosa_samantha	Rh2AG255800 Rh2BG266600 Rh2CG261200 Rh2DG264100
rosa_wichuraiana	Rw2G020010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	63
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	682
AccI	GTMKAC	1 cut(s)	659
AciI	CCGC	5 cut(s)	283, 454, 467, 647, 682
AclWI	GGATC	3 cut(s)	473, 719, 788
AcoI	YGGCCR	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	188, 1043
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	3 cut(s)	446, 463, 919
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	6 cut(s)	94, 122, 183, 868, 1135, 1162
AluBI	AGCT	2 cut(s)	302, 619
AluI	AGCT	2 cut(s)	302, 619
Alw21I	GWGCWC	2 cut(s)	541, 981
Alw26I	GTCTC	2 cut(s)	401, 1109
Alw44I	GTGCAC	1 cut(s)	977
AlwI	GGATC	3 cut(s)	473, 719, 788
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	4 cut(s)	284, 437, 451, 1083
ApaLI	GTGCAC	1 cut(s)	977
AspLEI	GCGC	2 cut(s)	72, 886
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	2 cut(s)	499, 500
AsuHPI	GGTGA	3 cut(s)	215, 283, 576
AsuII	TTCGAA	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	483
BaeGI	GKGCMC	2 cut(s)	969, 981
BalI	TGGCCA	1 cut(s)	439
Bbv12I	GWGCWC	2 cut(s)	541, 981
BccI	CCATC	2 cut(s)	244, 343
BceAI	ACGGC	1 cut(s)	386
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	499, 500
BcoDI	GTCTC	2 cut(s)	401, 1109
BfmI	CTRYAG	3 cut(s)	24, 608, 942
BfuAI	ACCTGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	1029
Bme1390I	CCNGG	2 cut(s)	499, 500
Bme18I	GGWCC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	499, 500
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	583, 922, 1046
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	3 cut(s)	441, 473, 1157
Bpu10I	CCTNAGC	2 cut(s)	846, 972
Bpu14I	TTCGAA	1 cut(s)	757
BpuMI	CCSGG	2 cut(s)	499, 500
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	4 cut(s)	216, 402, 498, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 463, 919
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	483
Bse3DI	GCAATG	3 cut(s)	367, 987, 1168
BseDI	CCNNGG	4 cut(s)	216, 402, 498, 776
BseGI	GGATG	2 cut(s)	354, 751
BseLI	CCNNNNNNNGG	3 cut(s)	446, 463, 919
BseMI	GCAATG	3 cut(s)	367, 987, 1168
BseMII	CTCAG	5 cut(s)	167, 497, 527, 573, 726
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	2 cut(s)	969, 981
BseYI	CCCAGC	1 cut(s)	670
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	4 cut(s)	286, 439, 453, 1085
BsiHKAI	GWGCWC	2 cut(s)	541, 981
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	1027
BslI	CCNNNNNNNGG	3 cut(s)	446, 463, 919
BsmAI	GTCTC	2 cut(s)	401, 1109
BsmFI	GGGAC	1 cut(s)	1027
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	4 cut(s)	286, 439, 453, 1085
Bso31I	GGTCTC	1 cut(s)	1109
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	757
Bsp1286I	GDGCHC	3 cut(s)	541, 969, 981
Bsp143I	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
BspACI	CCGC	5 cut(s)	283, 454, 467, 647, 682
BspANI	GGCC	4 cut(s)	286, 439, 453, 1085
BspCNI	CTCAG	5 cut(s)	166, 496, 526, 572, 725
BspMAI	CTGCAG	1 cut(s)	946
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	3 cut(s)	473, 719, 788
BspT104I	TTCGAA	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	1109
BsrBI	CCGCTC	1 cut(s)	682
BsrDI	GCAATG	3 cut(s)	367, 987, 1168
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	216, 402, 498, 776
BssMI	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	899
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	57, 969
BstDEI	CTNAG	9 cut(s)	153, 460, 483, 513, 559, 597, 712, 846, 972
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	354, 751
BstHHI	GCGC	2 cut(s)	72, 886
BstKTI	GATC	7 cut(s)	188, 274, 481, 727, 751, 783, 1032
BstMAI	GTCTC	2 cut(s)	401, 1109
BstMBI	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
BstMWI	GCNNNNNNNGC	9 cut(s)	545, 560, 577, 610, 691, 824, 908, 932, 941
BstSCI	CCNGG	2 cut(s)	497, 498
BstSFI	CTRYAG	3 cut(s)	24, 608, 942
BstSLI	GKGCMC	2 cut(s)	969, 981
BstX2I	RGATCY	2 cut(s)	780, 1029
BstYI	RGATCY	2 cut(s)	780, 1029
Bsu36I	CCTNAGG	1 cut(s)	483
BsuRI	GGCC	4 cut(s)	286, 439, 453, 1085
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	354, 751
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	2 cut(s)	440, 1002
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	57, 969
CfoI	GCGC	2 cut(s)	72, 886
Cfr13I	GGNCC	1 cut(s)	352
Cfr9I	CCCGGG	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	491
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	9 cut(s)	153, 460, 483, 513, 559, 597, 712, 846, 972
DpnI	GATC	7 cut(s)	187, 273, 480, 726, 750, 782, 1031
DpnII	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
EciI	GGCGGA	2 cut(s)	482, 636
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	1109
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	188, 1043
Eco81I	CCTNAGG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	1039
ErhI	CCWWGG	1 cut(s)	216
FaiI	YATR	5 cut(s)	26, 426, 916, 1035, 1149
FalI	AAGNNNNNCTT	6 cut(s)	161, 193, 300, 332, 1000, 1032
FaqI	GGGAC	1 cut(s)	1027
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	659
FokI	GGATG	2 cut(s)	361, 758
GlaI	GCGC	2 cut(s)	71, 885
GsaI	CCCAGC	1 cut(s)	674
HaeIII	GGCC	4 cut(s)	286, 439, 453, 1085
HapII	CCGG	1 cut(s)	499
HhaI	GCGC	2 cut(s)	72, 886
Hin6I	GCGC	2 cut(s)	70, 884
HinP1I	GCGC	2 cut(s)	70, 884
HinfI	GANTC	3 cut(s)	508, 517, 1048
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	3 cut(s)	215, 283, 576
Hpy166II	GTNNAC	2 cut(s)	660, 979
Hpy188III	TCNNGA	5 cut(s)	101, 183, 346, 485, 1135
Hpy8I	GTNNAC	2 cut(s)	660, 979
HpyAV	CCTTC	6 cut(s)	325, 591, 642, 674, 1018, 1156
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	9 cut(s)	307, 827, 908, 944, 979, 987, 1007, 1037, 1080
HpyF10VI	GCNNNNNNNGC	9 cut(s)	545, 560, 577, 610, 691, 824, 908, 932, 941
HpyF3I	CTNAG	9 cut(s)	153, 460, 483, 513, 559, 597, 712, 846, 972
HpySE526I	ACGT	1 cut(s)	223
HspAI	GCGC	2 cut(s)	70, 884
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
LmnI	GCTCC	3 cut(s)	544, 553, 1165
LweI	GCATC	3 cut(s)	583, 922, 1046
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	6 cut(s)	43, 173, 334, 376, 736, 1127
MalI	GATC	7 cut(s)	187, 273, 480, 726, 750, 782, 1031
MbiI	CCGCTC	1 cut(s)	682
MboI	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
MboII	GAAGA	4 cut(s)	407, 880, 886, 1082
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	2 cut(s)	780, 1029
MhlI	GDGCHC	3 cut(s)	541, 969, 981
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	2 cut(s)	198, 256
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	511
Mox20I	TGGCCA	1 cut(s)	439
Mph1103I	ATGCAT	1 cut(s)	1039
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	3 cut(s)	263, 360, 1089
Msp20I	TGGCCA	1 cut(s)	439
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	2 cut(s)	499, 500
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	421
MwoI	GCNNNNNNNGC	9 cut(s)	545, 560, 577, 610, 691, 824, 908, 932, 941
NciI	CCSGG	2 cut(s)	499, 500
NdeII	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
NmeAIII	GCCGAG	1 cut(s)	1138
NmuCI	GTSAC	3 cut(s)	43, 736, 1127
NsiI	ATGCAT	1 cut(s)	1039
NspV	TTCGAA	1 cut(s)	757
PaqCI	CACCTGC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	508, 1048
PflMI	CCANNNNNTGG	1 cut(s)	446
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	946
PsuI	RGATCY	2 cut(s)	780, 1029
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	263, 360, 1089
Sau3AI	GATC	7 cut(s)	185, 271, 478, 724, 748, 780, 1029
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	499, 500
SduI	GDGCHC	3 cut(s)	541, 969, 981
SfaNI	GCATC	3 cut(s)	583, 922, 1046
SfcI	CTRYAG	3 cut(s)	24, 608, 942
SfuI	TTCGAA	1 cut(s)	757
SinI	GGWCC	1 cut(s)	352
SmaI	CCCGGG	1 cut(s)	500
Sse9I	AATT	2 cut(s)	198, 256
SsiI	CCGC	5 cut(s)	283, 454, 467, 647, 682
SspI	AATATT	1 cut(s)	1063
StyD4I	CCNGG	2 cut(s)	497, 498
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	757
TasI	AATT	2 cut(s)	198, 256
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	3 cut(s)	286, 456, 685
TfiI	GAWTC	2 cut(s)	508, 1048
Tru1I	TTAA	3 cut(s)	263, 360, 1089
Tru9I	TTAA	3 cut(s)	263, 360, 1089
TscAI	CASTG	2 cut(s)	440, 1009
TseFI	GTSAC	3 cut(s)	43, 736, 1127
Tsp45I	GTSAC	3 cut(s)	43, 736, 1127
TspDTI	ATGAA	2 cut(s)	7, 375
TspGWI	ACGGA	1 cut(s)	427
TspMI	CCCGGG	1 cut(s)	498
TspRI	CASTG	2 cut(s)	440, 1009
Van91I	CCANNNNNTGG	1 cut(s)	446
VneI	GTGCAC	1 cut(s)	977
VpaK11BI	GGWCC	1 cut(s)	352
XmaI	CCCGGG	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.