pycom01g05110

Apoptotic chromatin condensation inducer in the nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008982
Physical Location & Seq
Reverse (-)
4655613 .. 4657435
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05110.1

Sequence Viewer

Length: 858 bp
ATGGTCAACTCTTCTGCTCCAAACTACCAGGTATCTGAGGTCAGCCATTTAGGGTTTGAAGTAAAATATGATTCTATTTCTACTGATTCTGTGTCAATTAATGAAAAGATTGAACTAAAGGATAATATAATTGCTGACCATGTCAAATTAGAATTAGATGTTAACCCGGAGATGGTGGATCCATCATCCAGCACTGTTGTCCCAGTCAGTGGTGATTCACATCCACTGGATGTTGAAGAACCACACCAGGACAAAGCTTCTGTTGGAGAGAAAGTTGACAACAATGATACAAATGCAGACATAAGCAAGAAAAATGATAGTGCTGATGTGGGGTACTCAGAAAAATTAAATTTAGAGAGAAGTTCTGGAGATGATTCTATGGAAGAAGATGTGCTGGACGGTAAACAAATTGATTCAAAGTATAATTCTGACGATGTGGGAGAGATGTGTGAGAAAAATGATGTACCCATTGTGAATGAGGAAAGTCATGTTGATATTGTGGGAGATGATATTTCCCTGGACAAAATGGATGAAAATGTTGAGATCAAGAATCATACAGCCGCACCTGCTGAGAAAAGAAAGCTTAATGATCAAGCAGCAGTTGGAAGCAATGAGCCTATAAAAAGGCGCAGGTGGAACTCTGAAAGCCTTAAAGTTCCAGAGCTGCAAAGTCCTATTCAAAAGCTGACGGTCACACCCAAGGAAACTTTCCAGACCACCAGTTTAAAGCGTAACTTTTCGAGATCAAACTCTACTATGAGTGAGGAAGCTCCCAAAGAACGTGTTGTTCCACCATCACAGAAGGCTCCAACTAATTCCCTTAGAATTGATCATGATCTGCGACCTTTCACCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002262 GO:0002376 GO:0002520 GO:0002682 GO:0002684 GO:0002761 GO:0002763 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006323 GO:0006915 GO:0006921 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016043 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022411 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030261 GO:0030262 GO:0030263 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033119 GO:0034101 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045637 GO:0045639 GO:0045655 GO:0045657 GO:0045934 GO:0048024 GO:0048025 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050684 GO:0050686 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061574 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0080090 GO:0097194 GO:1902105 GO:1902107 GO:1903311 GO:1903312 GO:1903706 GO:1903708 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
RSB_motif SAP

Protein Analysis

286

Amino Acids

31.63

Weight (kDa)

4.62

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 574, 621
Acc36I ACCTGC 2 cut(s) 574, 621
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 1 cut(s) 561
AclWI GGATC 2 cut(s) 173, 186
AcsI RAATTY 1 cut(s) 349
AfaI GTAC 2 cut(s) 335, 465
AfiI CCNNNNNNNGG 2 cut(s) 172, 209
AflIII ACRYGT 1 cut(s) 781
AgsI TTSAA 5 cut(s) 59, 113, 236, 417, 680
AjnI CCWGG 3 cut(s) 27, 246, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 5 cut(s) 257, 583, 664, 685, 770
AluI AGCT 5 cut(s) 257, 583, 664, 685, 770
AlwI GGATC 2 cut(s) 173, 186
ApeKI GCWGC 2 cut(s) 596, 664
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 1 cut(s) 99
AspLEI GCGC 1 cut(s) 630
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 224, 841
BamHI GGATCC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 608, 651
BccI CCATC 3 cut(s) 166, 190, 802
BciT130I CCWGG 3 cut(s) 29, 248, 518
BclI TGATCA 2 cut(s) 589, 829
BcnI CCSGG 1 cut(s) 167
BfuAI ACCTGC 2 cut(s) 574, 621
BisI GCNGC 3 cut(s) 561, 597, 665
BlsI GCNGC 3 cut(s) 562, 598, 666
Bme1390I CCNGG 4 cut(s) 29, 167, 248, 518
BmiI GGNNCC 2 cut(s) 180, 807
BmrFI CCNGG 4 cut(s) 29, 167, 248, 518
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 167
BsaBI GATNNNNATC 2 cut(s) 219, 834
BsaJI CCNNGG 2 cut(s) 516, 699
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 209
Bse1I ACTGG 3 cut(s) 203, 231, 720
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 2 cut(s) 219, 834
BseBI CCWGG 3 cut(s) 29, 248, 518
BseDI CCNNGG 2 cut(s) 516, 699
BseGI GGATG 4 cut(s) 185, 220, 235, 535
BseJI GATNNNNATC 2 cut(s) 219, 834
BseLI CCNNNNNNNGG 2 cut(s) 172, 209
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 3 cut(s) 27, 351, 561
BseNI ACTGG 3 cut(s) 203, 231, 720
BseXI GCAGC 2 cut(s) 608, 651
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 172, 209
BsmFI GGGAC 1 cut(s) 185
Bsp143I GATC 6 cut(s) 178, 543, 589, 743, 829, 835
BspACI CCGC 1 cut(s) 561
BspCNI CTCAG 3 cut(s) 28, 350, 562
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 180, 807
BspMI ACCTGC 2 cut(s) 574, 621
BspPI GGATC 2 cut(s) 173, 186
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 3 cut(s) 203, 231, 720
BssECI CCNNGG 2 cut(s) 516, 699
BssMI GATC 6 cut(s) 178, 543, 589, 743, 829, 835
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 29, 248, 518
Bst4CI ACNGT 3 cut(s) 196, 401, 691
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 36, 337, 570, 821
BstF5I GGATG 4 cut(s) 185, 220, 235, 535
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 6 cut(s) 181, 546, 592, 746, 832, 838
BstMBI GATC 6 cut(s) 178, 543, 589, 743, 829, 835
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNI CCWGG 3 cut(s) 29, 248, 518
BstSCI CCNGG 4 cut(s) 27, 165, 246, 516
BstV1I GCAGC 2 cut(s) 608, 651
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 4 cut(s) 185, 220, 235, 535
BtsIMutI CAGTG 3 cut(s) 192, 214, 224
BveI ACCTGC 2 cut(s) 574, 621
CciI TCATGA 1 cut(s) 832
CfoI GCGC 1 cut(s) 630
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 2 cut(s) 334, 464
CviAII CATG 3 cut(s) 140, 488, 833
CviQI GTAC 2 cut(s) 334, 464
DdeI CTNAG 4 cut(s) 36, 337, 570, 821
DpnI GATC 6 cut(s) 180, 545, 591, 745, 831, 837
DpnII GATC 6 cut(s) 178, 543, 589, 743, 829, 835
DraI TTTAAA 1 cut(s) 726
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 699
EcoRII CCWGG 3 cut(s) 27, 246, 516
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 3 cut(s) 143, 491, 836
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 1 cut(s) 185
FatI CATG 3 cut(s) 139, 487, 832
FbaI TGATCA 2 cut(s) 589, 829
Fnu4HI GCNGC 3 cut(s) 561, 597, 665
FokI GGATG 4 cut(s) 172, 207, 242, 542
Fsp4HI GCNGC 3 cut(s) 561, 597, 665
GlaI GCGC 1 cut(s) 629
GluI GCNGC 3 cut(s) 561, 597, 665
GsuI CTGGAG 1 cut(s) 387
HapII CCGG 1 cut(s) 167
HhaI GCGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 143, 491, 836
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 3 cut(s) 7, 163, 277
HindII GTYRAC 3 cut(s) 7, 163, 277
HindIII AAGCTT 2 cut(s) 255, 581
HinfI GANTC 6 cut(s) 71, 86, 215, 374, 413, 550
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 167
HphI GGTGA 2 cut(s) 224, 841
Hpy166II GTNNAC 4 cut(s) 7, 163, 277, 404
Hpy188I TCNGA 4 cut(s) 37, 340, 430, 643
Hpy188III TCNNGA 6 cut(s) 366, 547, 659, 712, 741, 833
Hpy8I GTNNAC 4 cut(s) 7, 163, 277, 404
HpyAV CCTTC 1 cut(s) 796
HpyCH4III ACNGT 3 cut(s) 196, 401, 691
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 2 cut(s) 296, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 4 cut(s) 36, 337, 570, 821
HpySE526I ACGT 1 cut(s) 781
Hsp92II CATG 3 cut(s) 143, 491, 836
HspAI GCGC 1 cut(s) 628
Ksp22I TGATCA 2 cut(s) 589, 829
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 6 cut(s) 178, 543, 589, 743, 829, 835
LmnI GCTCC 3 cut(s) 22, 775, 811
Lsp1109I GCAGC 2 cut(s) 608, 651
MabI ACCWGGT 1 cut(s) 27
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 2 cut(s) 691, 731
MalI GATC 6 cut(s) 180, 545, 591, 745, 831, 837
MboI GATC 6 cut(s) 178, 543, 589, 743, 829, 835
MboII GAAGA 4 cut(s) 3, 248, 395, 398
MflI RGATCY 1 cut(s) 178
MmeI TCCRAC 3 cut(s) 244, 583, 833
MnlI CCTC 3 cut(s) 31, 472, 757
MseI TTAA 6 cut(s) 99, 162, 347, 585, 651, 725
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 4 cut(s) 29, 167, 248, 518
MvaI CCWGG 3 cut(s) 29, 248, 518
MwoI GCNNNNNNNGC 1 cut(s) 566
NciI CCSGG 1 cut(s) 167
NdeII GATC 6 cut(s) 178, 543, 589, 743, 829, 835
NlaIII CATG 3 cut(s) 143, 491, 836
NlaIV GGNNCC 2 cut(s) 180, 807
NmuCI GTSAC 1 cut(s) 691
PagI TCATGA 1 cut(s) 832
PaqCI CACCTGC 2 cut(s) 574, 621
PfeI GAWTC 6 cut(s) 71, 86, 215, 374, 413, 550
PflFI GACNNNGTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 3 cut(s) 562, 598, 666
PshBI ATTAAT 1 cut(s) 99
Psp6I CCWGG 3 cut(s) 27, 246, 516
PspGI CCWGG 3 cut(s) 27, 246, 516
PspN4I GGNNCC 2 cut(s) 180, 807
PsuI RGATCY 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 335, 465
RsaNI GTAC 2 cut(s) 334, 464
SaqAI TTAA 6 cut(s) 99, 162, 347, 585, 651, 725
SatI GCNGC 3 cut(s) 561, 597, 665
Sau3AI GATC 6 cut(s) 178, 543, 589, 743, 829, 835
ScrFI CCNGG 4 cut(s) 29, 167, 248, 518
SexAI ACCWGGT 1 cut(s) 27
SsiI CCGC 1 cut(s) 561
StyD4I CCNGG 4 cut(s) 27, 165, 246, 516
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 3 cut(s) 196, 401, 691
TaiI ACGT 1 cut(s) 784
TaqI TCGA 1 cut(s) 740
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 6 cut(s) 71, 86, 215, 374, 413, 550
Tru1I TTAA 6 cut(s) 99, 162, 347, 585, 651, 725
Tru9I TTAA 6 cut(s) 99, 162, 347, 585, 651, 725
TscAI CASTG 3 cut(s) 199, 214, 231
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 2 cut(s) 596, 664
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 2 cut(s) 117, 546
TspRI CASTG 3 cut(s) 199, 214, 231
Tth111I GACNNNGTC 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 209
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.