MD01G1051300.v1.1

Armadillo/beta-catenin-like repeat

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
15495453 .. 15499054
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1051300.v1.1.491

Sequence Viewer

Length: 1683 bp
ATGGTGGAAGAAGGCGGCAATGAGGTTTCGATCTATACACGATCAGCAGAAGAATGGTTGTTACATGCTCGGGAGCTTGTCCCATTGGCACTGAACAAGGCAAGAGAGGTTAAGGGGTTTCCGGGTCGATGGAAGATGATCATTTCGAAGTTGGAGCAGATCCCTTCGTGTTTGTCAGATTTGTCTAGCCATCCGTGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGTCGGTATCTAAGACGTTGAAGGAGGTTATTGAATTGGCAGAGTTTTGTGTGGGCGAGAAACACGAAGGAAAACTTCGGATGCAGAGCAATCTGGATGCATTGTCTGGGAAACTAGATTTGAATTTGCGGGATTGCAGGCTATTGATCAAGACCGGGGTGCTTGGTGAGGCTACTTTGCCTTTAGCAATGGCTGGTTCTTCAAGTGAGCAGGAGGCTGCTGCCAATGGGAACATAAGGGAGCTGCTTGCGCGGCTTCAGATTGGTCACTTGGAGGCAAAACACAGGGCTCTCGACAGTCTCGTAGAGATCATGAAAGATGATGAAAAGAATGTGCTGTCAGTTATGAGTCGTAGTAACATTGCTGCTTTAGTTCAGCTGCTCACTGCAACATCTCCTCGTATCCGAGAGAAGACTGTGACTGTAATTTGCTCACTTGCAGAATCCGGAAGCTGTGAAAATTGGCTTGTTTCTGAAGGTGTTTTGCCACCTCTGATAAGGCTTGTTGAGTCTGGCAGTGCAGTAGGTAAAGAGAAGGCTACGATTTCGCTTCAGAGGTTGTCAATGTCCTCTGAGGCAGCACGTGCAATTGTTGGGCATGGAGGGGTTCGTCCACTGGTTGAGATCTGCCAAACTGGTGATTCTGTTTCTCAGGCTGCTTCTGCTAGCACTTTGAAGAACATATCAGCTGTCCCCGAGGTTCGACAGACTCTAGCTGAGGAAGGCATTGTAAAAGTTATGATCAATGTCCTTGATTGCGGAATTTTATTGGGTTCAAAAGAATATGCAGCAGAATGCTTACAGAATCTCACTGCAAGCAATGACAATCTCCGAAGGTCTGTAATATCAGAAGGTGGAATTCGGAGCCTGATGGCTTATCTTGCTGGCCCGTTGCCACAAGAATCCGCAGTTGGGGCATTGAGGAATTTGGTTGGTTCAGTTTCTATGGAGGTTTTGGTTTCTCTTGGTTTCCTTCCACGCATAGTTCACGTGCTTAAATCTGGTTCACTAGGGGCACAGCAGGCTGCTGCATCGGCAATTTGCAGGGTTTGCAGCTCAGCAGAGATGAAAAAATTGATCGGTGAAGTGGGGTGCATTCCTCTCCTCCTCAAGATGCTCGAGGCTAAATCAAACAGTGCAAGAGAGGTTGCTGCGCAGGCAGTTTCAAGTCTGATGACCTTTTCACACAATTGCAGGGAAGTGAAAAGGGATGACAAAAGTGTGCCAAGTCTAGTCCAATTGCTTGACCCTAGTCCCCAAAACACAGCCAAAAAATATGCAGTTTGTTGCCTTGGATTACTGTGTTCGAGTAAGAAATGCAAGAAGCTGATGGTCTCGTATGGAGCAATCGGGTACCTCAAGAAGCTTACGGAGATGGACATCCCTGGAGCGAAGAAGCTACTCGAACGGCTGGAAAGAGGGAAGTTGAGAAGTTTCTTCACAAGAAAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

60.37

Weight (kDa)

8.88

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 22 - 131 1.6e-38 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 264 - 473 3.7e-13 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1386
Acc65I GGTACC 1 cut(s) 1584
AccB1I GGYRCC 1 cut(s) 1584
AccII CGCG 1 cut(s) 484
AccIII TCCGGA 1 cut(s) 677
AciI CCGC 5 cut(s) 15, 361, 484, 990, 1137
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 4 cut(s) 355, 993, 1089, 1156
AcuI CTGAAG 3 cut(s) 473, 726, 767
AcvI CACGTG 2 cut(s) 815, 1222
AfaI GTAC 1 cut(s) 1586
AfiI CCNNNNNNNGG 1 cut(s) 1143
AgsI TTSAA 7 cut(s) 253, 266, 355, 435, 907, 1008, 1398
AjnI CCWGG 1 cut(s) 1615
AjuI GAANNNNNNNTTGG 2 cut(s) 1125, 1157
Alw26I GTCTC 2 cut(s) 536, 1570
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 3 cut(s) 69, 926, 1349
Aor13HI TCCGGA 1 cut(s) 677
AoxI GGCC 1 cut(s) 1117
ApoI RAATTY 4 cut(s) 355, 993, 1089, 1156
Asp718I GGTACC 1 cut(s) 1584
AspLEI GCGC 2 cut(s) 484, 1387
AspS9I GGNCC 1 cut(s) 1118
AsuC2I CCSGG 2 cut(s) 123, 388
AsuHPI GGTGA 3 cut(s) 410, 881, 1325
AsuII TTCGAA 1 cut(s) 146
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 3 cut(s) 69, 926, 1349
BaeGI GKGCMC 1 cut(s) 1249
BanI GGYRCC 1 cut(s) 1584
BanII GRGCYC 1 cut(s) 523
BbrPI CACGTG 2 cut(s) 815, 1222
BbsI GAAGAC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 948
BccI CCATC 5 cut(s) 123, 198, 1096, 1555, 1600
BceAI ACGGC 1 cut(s) 1655
BciT130I CCWGG 1 cut(s) 1617
BciVI GTATCC 1 cut(s) 644
BclI TGATCA 3 cut(s) 138, 378, 972
BcnI CCSGG 2 cut(s) 123, 388
BcoDI GTCTC 2 cut(s) 536, 1570
BfaI CTAG 7 cut(s) 186, 347, 897, 944, 1241, 1463, 1482
BfuI GTATCC 1 cut(s) 644
BglII AGATCT 1 cut(s) 855
BlpI GCTNAGC 1 cut(s) 1288
Bme1390I CCNGG 3 cut(s) 123, 388, 1617
BmeT110I CYCGRG 3 cut(s) 69, 926, 1349
BmgT120I GGNCC 1 cut(s) 1118
BmiI GGNNCC 2 cut(s) 1097, 1586
BmrFI CCNGG 3 cut(s) 123, 388, 1617
BmsI GCATC 4 cut(s) 303, 319, 1271, 1335
BmtI GCTAGC 1 cut(s) 900
BoxI GACNNNNGTC 1 cut(s) 1482
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 1 cut(s) 1638
Bpu10I CCTNAGC 1 cut(s) 948
Bpu1102I GCTNAGC 1 cut(s) 1288
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 1325, 1574
BpuMI CCSGG 2 cut(s) 123, 388
BsaAI YACGTR 2 cut(s) 815, 1222
BsaBI GATNNNNATC 1 cut(s) 1610
BsaI GGTCTC 1 cut(s) 1570
BsaJI CCNNGG 4 cut(s) 387, 927, 1522, 1615
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 1143
Bse1I ACTGG 2 cut(s) 852, 871
Bse3DI GCAATG 4 cut(s) 25, 426, 591, 1057
Bse8I GATNNNNATC 1 cut(s) 1610
BseAI TCCGGA 1 cut(s) 677
BseBI CCWGG 1 cut(s) 1617
BseDI CCNNGG 4 cut(s) 387, 927, 1522, 1615
BseGI GGATG 5 cut(s) 190, 318, 334, 1447, 1611
BseJI GATNNNNATC 1 cut(s) 1610
BseLI CCNNNNNNNGG 1 cut(s) 1143
BseMI GCAATG 4 cut(s) 25, 426, 591, 1057
BseMII CTCAG 4 cut(s) 795, 896, 939, 1302
BseNI ACTGG 2 cut(s) 852, 871
BseRI GAGGAG 3 cut(s) 618, 1325, 1328
BseSI GKGCMC 1 cut(s) 1249
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 1 cut(s) 1119
BshNI GGYRCC 1 cut(s) 1584
BsiHKCI CYCGRG 3 cut(s) 69, 926, 1349
BsiSI CCGG 3 cut(s) 122, 387, 678
BslFI GGGAC 3 cut(s) 65, 908, 1470
BslI CCNNNNNNNGG 1 cut(s) 1143
BsmAI GTCTC 2 cut(s) 536, 1570
BsmFI GGGAC 3 cut(s) 65, 908, 1470
BsmI GAATGC 3 cut(s) 214, 1031, 1326
BsnI GGCC 1 cut(s) 1119
Bso31I GGTCTC 1 cut(s) 1570
BsoBI CYCGRG 3 cut(s) 69, 926, 1349
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 523, 1249
Bsp13I TCCGGA 1 cut(s) 677
Bsp143I GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
Bsp1720I GCTNAGC 1 cut(s) 1288
BspACI CCGC 5 cut(s) 15, 361, 484, 990, 1137
BspANI GGCC 1 cut(s) 1119
BspCNI CTCAG 4 cut(s) 796, 895, 940, 1301
BspEI TCCGGA 1 cut(s) 677
BspFNI CGCG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 1097, 1586
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 1584
BspTNI GGTCTC 1 cut(s) 1570
BsrDI GCAATG 4 cut(s) 25, 426, 591, 1057
BsrI ACTGG 2 cut(s) 852, 871
BssECI CCNNGG 4 cut(s) 387, 927, 1522, 1615
BssMI GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
BssT1I CCWWGG 1 cut(s) 1522
Bst2UI CCWGG 1 cut(s) 1617
Bst4CI ACNGT 5 cut(s) 530, 649, 655, 1367, 1533
BstAPI GCANNNNNTGC 2 cut(s) 815, 1281
BstBAI YACGTR 2 cut(s) 815, 1222
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 7 cut(s) 371, 480, 898, 1048, 1117, 1254, 1389
BstDEI CTNAG 5 cut(s) 243, 804, 882, 948, 1288
BstF5I GGATG 5 cut(s) 190, 318, 334, 1447, 1611
BstFNI CGCG 1 cut(s) 484
BstHHI GCGC 2 cut(s) 484, 1387
BstKTI GATC 9 cut(s) 33, 44, 141, 162, 381, 543, 858, 975, 1311
BstMAI GTCTC 2 cut(s) 536, 1570
BstMBI GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
BstNI CCWGG 1 cut(s) 1617
BstNSI RCATGY 1 cut(s) 68
BstPAI GACNNNNGTC 1 cut(s) 1482
BstSCI CCNGG 3 cut(s) 121, 386, 1615
BstSLI GKGCMC 1 cut(s) 1249
BstUI CGCG 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 2 cut(s) 159, 855
BstYI RGATCY 2 cut(s) 159, 855
BsuI GTATCC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 1119
BtsCI GGATG 5 cut(s) 190, 318, 334, 1447, 1611
BtsI GCAGTG 3 cut(s) 615, 754, 1041
BtsIMutI CAGTG 6 cut(s) 89, 615, 754, 845, 1041, 1372
Cac8I GCNNGC 7 cut(s) 371, 480, 898, 1048, 1117, 1254, 1389
CciI TCATGA 1 cut(s) 543
CfoI GCGC 2 cut(s) 484, 1387
Cfr13I GGNCC 1 cut(s) 1118
Csp6I GTAC 1 cut(s) 1585
CviAII CATG 3 cut(s) 65, 544, 830
CviQI GTAC 1 cut(s) 1585
DdeI CTNAG 5 cut(s) 243, 804, 882, 948, 1288
DpnI GATC 9 cut(s) 32, 43, 140, 161, 380, 542, 857, 974, 1310
DpnII GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
Eco130I CCWWGG 1 cut(s) 1522
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 1570
Eco57I CTGAAG 3 cut(s) 473, 726, 767
Eco72I CACGTG 2 cut(s) 815, 1222
Eco88I CYCGRG 3 cut(s) 69, 926, 1349
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 1 cut(s) 1615
EcoT14I CCWWGG 1 cut(s) 1522
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 1522
FaeI CATG 3 cut(s) 68, 547, 833
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 3 cut(s) 65, 908, 1470
FatI CATG 3 cut(s) 64, 543, 829
FauI CCCGC 1 cut(s) 354
FbaI TGATCA 3 cut(s) 138, 378, 972
FokI GGATG 5 cut(s) 177, 325, 341, 1454, 1598
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 7 cut(s) 186, 347, 897, 944, 1241, 1463, 1482
FspI TGCGCA 1 cut(s) 1386
GlaI GCGC 2 cut(s) 483, 1386
GsuI CTGGAG 1 cut(s) 1638
HaeIII GGCC 1 cut(s) 1119
HapII CCGG 3 cut(s) 122, 387, 678
HhaI GCGC 2 cut(s) 484, 1387
Hin1II CATG 3 cut(s) 68, 547, 833
Hin6I GCGC 2 cut(s) 482, 1385
HinP1I GCGC 2 cut(s) 482, 1385
HindIII AAGCTT 1 cut(s) 1595
HinfI GANTC 7 cut(s) 580, 674, 740, 872, 940, 1036, 1133
HpaII CCGG 3 cut(s) 122, 387, 678
HphI GGTGA 3 cut(s) 410, 881, 1325
Hpy166II GTNNAC 3 cut(s) 845, 1219, 1238
Hpy188III TCNNGA 8 cut(s) 71, 326, 382, 524, 544, 678, 1342, 1591
Hpy8I GTNNAC 3 cut(s) 845, 1219, 1238
HpyCH4III ACNGT 5 cut(s) 530, 649, 655, 1367, 1533
HpyCH4IV ACGT 3 cut(s) 248, 814, 1221
HpyF3I CTNAG 5 cut(s) 243, 804, 882, 948, 1288
HpySE526I ACGT 3 cut(s) 248, 814, 1221
Hsp92II CATG 3 cut(s) 68, 547, 833
HspAI GCGC 2 cut(s) 482, 1385
Kpn2I TCCGGA 1 cut(s) 677
KpnI GGTACC 1 cut(s) 1588
Ksp22I TGATCA 3 cut(s) 138, 378, 972
Kzo9I GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
LmnI GCTCC 7 cut(s) 73, 154, 223, 472, 1095, 1574, 1619
LweI GCATC 4 cut(s) 303, 319, 1271, 1335
MaeI CTAG 7 cut(s) 186, 347, 897, 944, 1241, 1463, 1482
MaeII ACGT 3 cut(s) 248, 814, 1221
MaeIII GTNAC 4 cut(s) 60, 497, 587, 649
MalI GATC 9 cut(s) 32, 43, 140, 161, 380, 542, 857, 974, 1310
MboI GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
MboII GAAGA 8 cut(s) 20, 62, 145, 423, 655, 919, 1636, 1660
MfeI CAATTG 4 cut(s) 227, 819, 1420, 1469
MflI RGATCY 2 cut(s) 159, 855
MhlI GDGCHC 2 cut(s) 523, 1249
MlyI GAGTC 3 cut(s) 589, 749, 934
MmeI TCCRAC 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 334
MroI TCCGGA 1 cut(s) 677
MseI TTAA 2 cut(s) 111, 1227
MspA1I CMGCKG 2 cut(s) 610, 920
MspI CCGG 3 cut(s) 122, 387, 678
MspR9I CCNGG 3 cut(s) 123, 388, 1617
MunI CAATTG 4 cut(s) 227, 819, 1420, 1469
Mva1269I GAATGC 3 cut(s) 214, 1031, 1326
MvaI CCWGG 1 cut(s) 1617
MvnI CGCG 1 cut(s) 484
NciI CCSGG 2 cut(s) 123, 388
NdeII GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 3 cut(s) 68, 547, 833
NlaIV GGNNCC 2 cut(s) 1097, 1586
NmuCI GTSAC 2 cut(s) 497, 649
NsbI TGCGCA 1 cut(s) 1386
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 68
NspV TTCGAA 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 1349
PagI TCATGA 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 3 cut(s) 214, 1031, 1326
PfeI GAWTC 4 cut(s) 674, 872, 1036, 1133
PleI GAGTC 3 cut(s) 588, 748, 934
PmaCI CACGTG 2 cut(s) 815, 1222
PmlI CACGTG 2 cut(s) 815, 1222
PpsI GAGTC 3 cut(s) 588, 748, 934
Ppu21I YACGTR 2 cut(s) 815, 1222
PshAI GACNNNNGTC 1 cut(s) 1482
Psp6I CCWGG 1 cut(s) 1615
PspCI CACGTG 2 cut(s) 815, 1222
PspGI CCWGG 1 cut(s) 1615
PspN4I GGNNCC 2 cut(s) 1097, 1586
PspPI GGNCC 1 cut(s) 1118
PspXI VCTCGAGB 1 cut(s) 1349
PsuI RGATCY 2 cut(s) 159, 855
PvuII CAGCTG 2 cut(s) 610, 920
RsaI GTAC 1 cut(s) 1586
RsaNI GTAC 1 cut(s) 1585
SaqAI TTAA 2 cut(s) 111, 1227
Sau3AI GATC 9 cut(s) 30, 41, 138, 159, 378, 540, 855, 972, 1308
Sau96I GGNCC 1 cut(s) 1118
SchI GAGTC 3 cut(s) 589, 749, 934
ScrFI CCNGG 3 cut(s) 123, 388, 1617
SduI GDGCHC 2 cut(s) 523, 1249
SfaNI GCATC 4 cut(s) 303, 319, 1271, 1335
Sfr274I CTCGAG 1 cut(s) 1349
SfuI TTCGAA 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 1349
SmlI CTYRAG 3 cut(s) 1340, 1349, 1589
SmoI CTYRAG 3 cut(s) 1340, 1349, 1589
SsiI CCGC 5 cut(s) 15, 361, 484, 990, 1137
SspMI CTAG 7 cut(s) 186, 347, 897, 944, 1241, 1463, 1482
StyD4I CCNGG 3 cut(s) 121, 386, 1615
StyI CCWWGG 1 cut(s) 1522
TaaI ACNGT 5 cut(s) 530, 649, 655, 1367, 1533
TaiI ACGT 3 cut(s) 251, 817, 1224
TaqI TCGA 8 cut(s) 29, 127, 146, 525, 934, 1350, 1538, 1635
TauI GCSGC 2 cut(s) 18, 487
TfiI GAWTC 4 cut(s) 674, 872, 1036, 1133
Tru1I TTAA 2 cut(s) 111, 1227
Tru9I TTAA 2 cut(s) 111, 1227
TscAI CASTG 6 cut(s) 96, 622, 754, 852, 1048, 1372
TseFI GTSAC 2 cut(s) 497, 649
Tsp45I GTSAC 2 cut(s) 497, 649
TspDTI ATGAA 3 cut(s) 560, 570, 1313
TspGWI ACGGA 2 cut(s) 183, 1616
TspRI CASTG 6 cut(s) 96, 622, 754, 852, 1048, 1372
XapI RAATTY 4 cut(s) 355, 993, 1089, 1156
XceI RCATGY 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 1349
XspI CTAG 7 cut(s) 186, 347, 897, 944, 1241, 1463, 1482
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.