Rroxscaffold_4G00303010

Armadillo/beta-catenin-like repeat

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
23372018 .. 23375574
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303010.1

Sequence Viewer

Length: 1746 bp
ATGGGGTGTCTTTTAGTTGGTCTAGCTCTGGTATCCAATTTGATTAATACCCAGATTGAAATCATGGTGGAAGAAAGTGGTAGCAAGGTTTTGACCGATACCCGGTCAGCCGAAGAATGGTTATCACAAGCAAGGGAGCTTGTTCCATTGGCACTGAATAAGGCAAGAGAGGTTAAGGGGTTTCCAGGTAGATGGAAGATGATCATTTCAAAGTTGGAGCAGATCCCATCACGATTATCAGACTTATCTAGCCATCCCTGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGTCAGTATCTAAGACATTGAAAGAAGCTATTGAATTGGCAGAGTTTTGTGTGGGGGAGAAGTATGAAGGAAAGCTTCGTATGCAGAGTGATCTTGATTCATTGTCTGGTAAATTGGACTTGAATTTGCGTGATTGTGGCCTTTTAATCAAGACTGGGGTGCTTGGTGAGGCTACTTTGCCTTTGTCTATGGCTAGTTCTTCAACTGAACCTGAGGTTGCTCTACATGGTAATATAAGGGAATTGCTTGCTCGGCTTCAGATTGGGCACTTGGAAGCAAAGCACAAAGCTCTTGACAGTCTTGTTGAGCTCATGAAAGAGGATGAAAAGAATGTGTTGTCGGTTTTGGGGCGTAGCAATATTGCTGCTTTGGTCCAACTGCTCACCGCAACATCTCCTCGTATCCGGGAGAAGACTGTAACTGTTATTTGCTCGCTTGCAGAATCTGGAAGTTGTGAGAATTGGCTTGTTTCTGAGGGTGTCTTACCACCTCTAATAAGGCTAGTTGAATCTGGGAGTGCTGTTGGGAAAGAAAAGGCTACAATTTCGCTTCAGAGATTGTCAATGTCAGCTGAAGCAGCTAGAGCAATCGTTGGGCACGGTGGGGTTAGACCGCTGATTGAGATTTGCCAGACTGGTGATTCAGTTTCTCAGGCTGCTTCTGCTAGCACTTTGAAGAACATATCAGCTGTCCCCGAGGTTCGACAAACTCTAGCTGAGGAAGGAATTGTAAAGGTTATGATCAATCTTCTTGATTGTGGAATGTTATTGGGGTCCAAAGAATATGCAGCTGAGTGTTTGCAGAATCTCACTGCAAGCAATGACAATCTAAGACGGTCTGTAATATCAGAAGGTGGAATTCGGAGCCTACTGGCTTATCTAGCCGGTCCATTGCCACAAGAGTCTGCAGTCGCTGCATTGAGGAACCTGGTTGGCTCGGTTTCTATGGAAGTTTTGGTTTCTCTTGGTCTTCTCCCTTGCTTGGTTCACGTGCTTAAATCTGGTTCACTAGGTGCACAACAAGCAGCTGCATCGGCAATATGCCGAGTTTGCAGCTCAACTGAGATGAAGAAATTGATTGGTGAGGCGGGCTACATTCCTCTTCTTATCAAGATGCTTGAGGCTAAATCAAACAGTGCCAGAGAGGTTGCTGCACAGGCGATATCGAGTTTGATGAGCCTTCCACACAATTGTAGAGAAGTGAAAAGGGACAACAAAAGTGTACCAAATTTGGTCCAATTGCTTGATCCTAGTCCACAAAACACAGCCAAAAAGTATGCAGTTTGTGCCCTCGGCTTAATTTGTTCGAGTAAGAAGTGTAAGAAGCTGATGGTATCCTATGGAGCAATTGGGTATCTCAAGAAGCTTACTGAGATGGACATACCAGGAGCCAAGAAGCTACTTGAGAGGTTGGAAAGAGGAAAGTTGAGAAGTTTCTTCACTAGAAAATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

62.5

Weight (kDa)

8.83

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 43 - 152 7.3e-40 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 287 - 498 3.1e-14 ARMC5
ARM_PUB PF25598 323 - 548 8.1e-07 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 681, 908, 1382
AclWI GGATC 2 cut(s) 217, 1535
AcsI RAATTY 3 cut(s) 418, 1152, 1522
AcuI CTGAAG 3 cut(s) 536, 830, 888
AcvI CACGTG 1 cut(s) 1285
AdeI CACNNNGTG 1 cut(s) 1307
AfaI GTAC 1 cut(s) 1518
AfiI CCNNNNNNNGG 3 cut(s) 102, 117, 1276
AgsI TTSAA 8 cut(s) 59, 210, 316, 329, 418, 498, 803, 970
AjnI CCWGG 3 cut(s) 184, 1221, 1678
Alw21I GWGCWC 2 cut(s) 606, 1312
Alw44I GTGCAC 1 cut(s) 1308
AlwI GGATC 2 cut(s) 217, 1535
AlwNI CAGNNNCTG 2 cut(s) 740, 1208
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 1 cut(s) 433
ApaLI GTGCAC 1 cut(s) 1308
ApeKI GCWGC 9 cut(s) 659, 872, 950, 1082, 1208, 1319, 1322, 1347, 1445
ApoI RAATTY 3 cut(s) 418, 1152, 1522
AseI ATTAAT 1 cut(s) 45
AspS9I GGNCC 4 cut(s) 667, 1068, 1181, 1528
AsuC2I CCSGG 2 cut(s) 103, 701
AsuHPI GGTGA 4 cut(s) 473, 670, 944, 1388
AsuNHI GCTAGC 1 cut(s) 959
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 4 cut(s) 667, 1068, 1181, 1528
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 4 cut(s) 564, 894, 1312, 1585
BanII GRGCYC 1 cut(s) 606
BbrPI CACGTG 1 cut(s) 1285
BbsI GAAGAC 2 cut(s) 713, 1256
Bbv12I GWGCWC 2 cut(s) 606, 1312
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 9 cut(s) 646, 884, 937, 1094, 1195, 1309, 1331, 1359, 1432
BccI CCATC 5 cut(s) 186, 235, 261, 1618, 1663
BcgI CGANNNNNNTGC 2 cut(s) 1308, 1342
BciT130I CCWGG 3 cut(s) 186, 1223, 1680
BciVI GTATCC 3 cut(s) 43, 707, 1639
BclI TGATCA 2 cut(s) 201, 1035
BcnI CCSGG 2 cut(s) 103, 701
BfmI CTRYAG 1 cut(s) 1200
BfuI GTATCC 3 cut(s) 43, 707, 1639
BisI GCNGC 9 cut(s) 660, 873, 951, 1083, 1209, 1320, 1323, 1348, 1446
BlsI GCNGC 9 cut(s) 661, 874, 952, 1084, 1210, 1321, 1324, 1349, 1447
Bme1390I CCNGG 5 cut(s) 103, 186, 701, 1223, 1680
Bme18I GGWCC 4 cut(s) 667, 1068, 1181, 1528
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 4 cut(s) 667, 1068, 1181, 1528
BmiI GGNNCC 4 cut(s) 1069, 1160, 1220, 1684
BmrFI CCNGG 5 cut(s) 103, 186, 701, 1223, 1680
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 1334, 1398
BmtI GCTAGC 1 cut(s) 963
BmuI ACTGGG 1 cut(s) 459
BpiI GAAGAC 2 cut(s) 713, 1256
Bpu10I CCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 3 cut(s) 1433, 1637, 1718
BpuMI CCSGG 2 cut(s) 103, 701
BsaAI YACGTR 1 cut(s) 1285
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 990, 1585
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 117, 1276
Bse118I RCCGGY 1 cut(s) 1178
Bse1I ACTGG 3 cut(s) 454, 934, 1170
Bse21I CCTNAGG 1 cut(s) 507
Bse3DI GCAATG 2 cut(s) 1120, 1184
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 3 cut(s) 186, 1223, 1680
BseDI CCNNGG 2 cut(s) 990, 1585
BseGI GGATG 2 cut(s) 253, 622
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 102, 117, 1276
BseMI GCAATG 2 cut(s) 1120, 1184
BseMII CTCAG 7 cut(s) 498, 759, 959, 1002, 1077, 1347, 1656
BseNI ACTGG 3 cut(s) 454, 934, 1170
BseRI GAGGAG 1 cut(s) 681
BseSI GKGCMC 4 cut(s) 564, 894, 1312, 1585
BseXI GCAGC 9 cut(s) 646, 884, 937, 1094, 1195, 1309, 1331, 1359, 1432
BsgI GTGCAG 1 cut(s) 1431
BshFI GGCC 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 606, 1312
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 3 cut(s) 103, 700, 1179
BslFI GGGAC 2 cut(s) 971, 1517
BslI CCNNNNNNNGG 3 cut(s) 102, 117, 1276
BsmFI GGGAC 2 cut(s) 971, 1517
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 1 cut(s) 435
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 5 cut(s) 564, 606, 894, 1312, 1585
Bsp143I GATC 5 cut(s) 201, 222, 385, 1035, 1540
BspACI CCGC 3 cut(s) 681, 908, 1382
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 7 cut(s) 499, 760, 958, 1003, 1078, 1348, 1657
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 4 cut(s) 1069, 1160, 1220, 1684
BspMAI CTGCAG 1 cut(s) 1204
BspOI GCTAGC 1 cut(s) 963
BspPI GGATC 2 cut(s) 217, 1535
BsrDI GCAATG 2 cut(s) 1120, 1184
BsrFI RCCGGY 1 cut(s) 1178
BsrI ACTGG 3 cut(s) 454, 934, 1170
BssAI RCCGGY 1 cut(s) 1178
BssECI CCNNGG 2 cut(s) 990, 1585
BssMI GATC 5 cut(s) 201, 222, 385, 1035, 1540
Bst2UI CCWGG 3 cut(s) 186, 1223, 1680
Bst4CI ACNGT 6 cut(s) 593, 712, 718, 896, 1131, 1430
Bst6I CTCTTC 1 cut(s) 1401
BstAPI GCANNNNNTGC 2 cut(s) 1208, 1580
BstBAI YACGTR 1 cut(s) 1285
BstC8I GCNNGC 6 cut(s) 543, 728, 732, 961, 1111, 1384
BstDEI CTNAG 9 cut(s) 306, 507, 768, 945, 1011, 1086, 1124, 1356, 1665
BstF5I GGATG 2 cut(s) 253, 622
BstKTI GATC 5 cut(s) 204, 225, 388, 1038, 1543
BstMBI GATC 5 cut(s) 201, 222, 385, 1035, 1540
BstNI CCWGG 3 cut(s) 186, 1223, 1680
BstSCI CCNGG 5 cut(s) 101, 184, 699, 1221, 1678
BstSFI CTRYAG 1 cut(s) 1200
BstSLI GKGCMC 4 cut(s) 564, 894, 1312, 1585
BstV1I GCAGC 9 cut(s) 646, 884, 937, 1094, 1195, 1309, 1331, 1359, 1432
BstV2I GAAGAC 2 cut(s) 713, 1256
BstX2I RGATCY 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 192
BstYI RGATCY 1 cut(s) 222
Bsu36I CCTNAGG 1 cut(s) 507
BsuI GTATCC 3 cut(s) 43, 707, 1639
BsuRI GGCC 1 cut(s) 435
BtsCI GGATG 2 cut(s) 253, 622
BtsI GCAGTG 1 cut(s) 1104
BtsIMutI CAGTG 3 cut(s) 152, 1104, 1435
Cac8I GCNNGC 6 cut(s) 543, 728, 732, 961, 1111, 1384
CaiI CAGNNNCTG 2 cut(s) 740, 1208
CciI TCATGA 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 1178
Cfr13I GGNCC 4 cut(s) 667, 1068, 1181, 1528
CsiI ACCWGGT 1 cut(s) 1221
Csp6I GTAC 1 cut(s) 1517
CviAII CATG 3 cut(s) 64, 521, 607
CviQI GTAC 1 cut(s) 1517
DdeI CTNAG 9 cut(s) 306, 507, 768, 945, 1011, 1086, 1124, 1356, 1665
DpnI GATC 5 cut(s) 203, 224, 387, 1037, 1542
DpnII GATC 5 cut(s) 201, 222, 385, 1035, 1540
DraIII CACNNNGTG 1 cut(s) 1307
Eam1104I CTCTTC 1 cut(s) 1401
EarI CTCTTC 1 cut(s) 1401
Ecl136II GAGCTC 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 606
Eco32I GATATC 1 cut(s) 1458
Eco47I GGWCC 4 cut(s) 667, 1068, 1181, 1528
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 3 cut(s) 536, 830, 888
Eco72I CACGTG 1 cut(s) 1285
Eco81I CCTNAGG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 989
EcoICRI GAGCTC 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 1152
EcoRII CCWGG 3 cut(s) 184, 1221, 1678
EcoRV GATATC 1 cut(s) 1458
EcoT38I GRGCYC 1 cut(s) 606
FaeI CATG 3 cut(s) 67, 524, 610
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 2 cut(s) 971, 1517
FatI CATG 3 cut(s) 63, 520, 606
FauI CCCGC 1 cut(s) 1375
FbaI TGATCA 2 cut(s) 201, 1035
Fnu4HI GCNGC 9 cut(s) 660, 873, 951, 1083, 1209, 1320, 1323, 1348, 1446
FokI GGATG 2 cut(s) 240, 629
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 9 cut(s) 660, 873, 951, 1083, 1209, 1320, 1323, 1348, 1446
GluI GCNGC 9 cut(s) 660, 873, 951, 1083, 1209, 1320, 1323, 1348, 1446
HaeIII GGCC 1 cut(s) 435
HapII CCGG 3 cut(s) 103, 700, 1179
Hin1II CATG 3 cut(s) 67, 524, 610
HindIII AAGCTT 2 cut(s) 368, 1658
HinfI GANTC 6 cut(s) 392, 737, 803, 935, 1099, 1196
HpaII CCGG 3 cut(s) 103, 700, 1179
HphI GGTGA 4 cut(s) 473, 670, 944, 1388
Hpy166II GTNNAC 5 cut(s) 1282, 1301, 1310, 1517, 1550
Hpy188I TCNGA 6 cut(s) 241, 555, 769, 849, 1144, 1158
Hpy188III TCNNGA 9 cut(s) 231, 389, 445, 587, 607, 741, 1046, 1405, 1654
Hpy8I GTNNAC 5 cut(s) 1282, 1301, 1310, 1517, 1550
HpyAV CCTTC 4 cut(s) 356, 1010, 1139, 1484
HpyCH4III ACNGT 6 cut(s) 593, 712, 718, 896, 1131, 1430
HpyCH4IV ACGT 1 cut(s) 1284
HpyF3I CTNAG 9 cut(s) 306, 507, 768, 945, 1011, 1086, 1124, 1356, 1665
HpySE526I ACGT 1 cut(s) 1284
Hsp92II CATG 3 cut(s) 67, 524, 610
Ksp22I TGATCA 2 cut(s) 201, 1035
Kzo9I GATC 5 cut(s) 201, 222, 385, 1035, 1540
LmnI GCTCC 6 cut(s) 136, 217, 286, 1158, 1637, 1682
Lsp1109I GCAGC 9 cut(s) 646, 884, 937, 1094, 1195, 1309, 1331, 1359, 1432
LweI GCATC 2 cut(s) 1334, 1398
MabI ACCWGGT 1 cut(s) 1221
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 1 cut(s) 712
MalI GATC 5 cut(s) 203, 224, 387, 1037, 1542
MboI GATC 5 cut(s) 201, 222, 385, 1035, 1540
MfeI CAATTG 4 cut(s) 290, 1483, 1532, 1641
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 5 cut(s) 564, 606, 894, 1312, 1585
MlyI GAGTC 1 cut(s) 1205
MmeI TCCRAC 3 cut(s) 195, 694, 1686
MseI TTAA 5 cut(s) 45, 174, 440, 1290, 1592
MspA1I CMGCKG 5 cut(s) 866, 910, 983, 1085, 1322
MspI CCGG 3 cut(s) 103, 700, 1179
MspR9I CCNGG 5 cut(s) 103, 186, 701, 1223, 1680
MunI CAATTG 4 cut(s) 290, 1483, 1532, 1641
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 3 cut(s) 186, 1223, 1680
NciI CCSGG 2 cut(s) 103, 701
NdeII GATC 5 cut(s) 201, 222, 385, 1035, 1540
NheI GCTAGC 1 cut(s) 959
NlaIII CATG 3 cut(s) 67, 524, 610
NlaIV GGNNCC 4 cut(s) 1069, 1160, 1220, 1684
NmeAIII GCCGAG 3 cut(s) 526, 1364, 1566
PagI TCATGA 1 cut(s) 606
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 5 cut(s) 392, 737, 803, 935, 1099
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 9 cut(s) 661, 874, 952, 1084, 1210, 1321, 1324, 1349, 1447
PleI GAGTC 1 cut(s) 1204
PmaCI CACGTG 1 cut(s) 1285
PmlI CACGTG 1 cut(s) 1285
PpsI GAGTC 1 cut(s) 1204
Ppu21I YACGTR 1 cut(s) 1285
PshBI ATTAAT 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 184, 1221, 1678
PspCI CACGTG 1 cut(s) 1285
PspGI CCWGG 3 cut(s) 184, 1221, 1678
PspN4I GGNNCC 4 cut(s) 1069, 1160, 1220, 1684
PspPI GGNCC 4 cut(s) 667, 1068, 1181, 1528
PstI CTGCAG 1 cut(s) 1204
PstNI CAGNNNCTG 2 cut(s) 740, 1208
PsuI RGATCY 1 cut(s) 222
PvuII CAGCTG 4 cut(s) 866, 983, 1085, 1322
RsaI GTAC 1 cut(s) 1518
RsaNI GTAC 1 cut(s) 1517
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 5 cut(s) 45, 174, 440, 1290, 1592
SatI GCNGC 9 cut(s) 660, 873, 951, 1083, 1209, 1320, 1323, 1348, 1446
Sau3AI GATC 5 cut(s) 201, 222, 385, 1035, 1540
Sau96I GGNCC 4 cut(s) 667, 1068, 1181, 1528
SchI GAGTC 1 cut(s) 1205
ScrFI CCNGG 5 cut(s) 103, 186, 701, 1223, 1680
SduI GDGCHC 5 cut(s) 564, 606, 894, 1312, 1585
SexAI ACCWGGT 1 cut(s) 1221
SfaNI GCATC 2 cut(s) 1334, 1398
SfcI CTRYAG 1 cut(s) 1200
SinI GGWCC 4 cut(s) 667, 1068, 1181, 1528
SmlI CTYRAG 3 cut(s) 1412, 1652, 1697
SmoI CTYRAG 3 cut(s) 1412, 1652, 1697
SsiI CCGC 3 cut(s) 681, 908, 1382
SspI AATATT 1 cut(s) 655
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 5 cut(s) 101, 184, 699, 1221, 1678
TaaI ACNGT 6 cut(s) 593, 712, 718, 896, 1131, 1430
TaiI ACGT 1 cut(s) 1287
TaqI TCGA 3 cut(s) 997, 1460, 1601
TaqII GACCGA 1 cut(s) 110
TfiI GAWTC 5 cut(s) 392, 737, 803, 935, 1099
Tru1I TTAA 5 cut(s) 45, 174, 440, 1290, 1592
Tru9I TTAA 5 cut(s) 45, 174, 440, 1290, 1592
TscAI CASTG 3 cut(s) 159, 1111, 1435
TseI GCWGC 9 cut(s) 659, 872, 950, 1082, 1208, 1319, 1322, 1347, 1445
TspDTI ATGAA 5 cut(s) 375, 384, 623, 633, 1376
TspRI CASTG 3 cut(s) 159, 1111, 1435
VneI GTGCAC 1 cut(s) 1308
VpaK11BI GGWCC 4 cut(s) 667, 1068, 1181, 1528
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 3 cut(s) 418, 1152, 1522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.