pycom01g07600

Armadillo/beta-catenin-like repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
8539158 .. 8540844
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07600.1

Sequence Viewer

Length: 1626 bp
ATGGTGGAAGAAGGCGGCAATGAGGTTTCGATCTATACACGATCAGCAGAAGAATGGTTGTTACATGCTCGGGAGCTTGTTCCATTGGCACTGAACAAGGCAAGAGAGGTTAAGGGGTTTCCGGGTCGATGGAAGATGATCATTTCGAAGTTGGAGCAGATCCCTTCGCGTTTGTCGGATTTGTCTAGCCATCCGTGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGTCGGTATCTGAGACGTTGAAGGAGGTTATTGAATTGGCAGAGTTTTGTGTGGGGGAGAAACACGAAGGAAAACTTCGGATGCAGAGCAATCTGGATGCATTGTCTGGGAAACTAGATTTGAATTTGCGGGATTGCGGGCTATCGATCAAGACCGGGGTGCTTGGTGAGGCTACTTTGCCTTTACCAATGGCCGGTTCCTCAAGTGAGCCGGAGGCTGCTGCCAATGGGAACATAAGGGAGCTGCTTGCGCGGCTTCAGATTGGTCACTTGGAGGCAAAACACAGGGCTCTCGACAGTCTCGTAGGGGTCATGAAAGATGATGAAAAGAATGTGCTGTCAGTTATGAGTCGTAGTAACATTGCTGCTTTAGTTCAGCTGCTCACTGCAACATCTCCTCGGATCCGAGAGAAGACTGTGACTCTAATTTGCTCACTTGCAGAATCTGGAAGCTGCGAAAATTGGCTTGTTTCTGAAGGTGTTTTGCCACCTCTGATAAGGCTTGTTGAGTCTGGCAGTGCAGTAGGGAAAGAGAAGGCTACAATTTCGCTTCAGAGGTTGTCAATGTCTGCTGAGGCAGCACGTGCAATTGTTGGGCATGGAGGGGTTCGTCCACTGGTTGAGATCTGCCAAACTGGTGATTCTGTTTCTCAGGCTGCTTCTGCTAGCACTTTGAAGAACATATCAGCTGTCCCTGAGGTTCGACAGACTCTAGCTGAGGAAGAATATGCAGCAGAATGCTTACAGAATCTCACTGCAAGCAATGACAATCTCCGAAGGTCTGTAATATCAGAAGGTGGAATTCGGAGCCTGATGGCTTATCTTGCTGGCCCGTTGCCACAAGAATCCGCAGTTGGGGCATTGAGGAATTTGGTTGGTTCGGTTTCTATGGAGGTCTTGGTTTCTCTTGGTTTCCTTCCACGCATAGTTCACGTGCTTAAATCTGGTTCACTGGGGGCACAGCAGGCTGCTGCATCGGCAATTTGCAGGGTTTGCAGCTCAACAGAGATGAAAAAATTGATCGGTGAAGTGGGGTGCATTCCTCTCCTCCTCAAGATGCTCGATGCTAAATCAAACAGTGCAAGAGAGGTTGCTGCACAGGCAGTTTCGAGTCTGATGACCTTTTCGCACAATTGCAGAGAAGTGAAAAGGGATGACAAAAGTGTGCCAAGTCTAGTCCAACTGCTTGACCCTAGTCCCCAAAACACAGCCAAAAAATACGCAGTTTGTTGCCTTGGATTACTGTGTTCGAGTAAGAAATGCAAGAAGCTGATGGTCTCATATGGAGCAATCGGGTACCTCAAGAAGCTTACCGAGATGGACATCCCTGGAGCGAAGAAGCTACTCGAACGGCTGGAAAGAGGGAAGTTGAGAAGTTTCTTCACAAGAAAATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

58.27

Weight (kDa)

8.82

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 22 - 131 4.4e-37 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 264 - 454 1.3e-10 ARMC5
ARM_PUB PF25598 276 - 508 6.3e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1527
AccB1I GGYRCC 1 cut(s) 1527
AccII CGCG 2 cut(s) 169, 484
AciI CCGC 5 cut(s) 15, 361, 369, 484, 1080
AclWI GGATC 3 cut(s) 154, 628, 641
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 3 cut(s) 355, 1032, 1099
AcuI CTGAAG 3 cut(s) 473, 726, 767
AcvI CACGTG 2 cut(s) 815, 1165
AfaI GTAC 1 cut(s) 1529
AfiI CCNNNNNNNGG 2 cut(s) 425, 1086
AgsI TTSAA 4 cut(s) 253, 266, 355, 907
AjnI CCWGG 1 cut(s) 1558
AjuI GAANNNNNNNTTGG 4 cut(s) 412, 444, 1068, 1100
Alw26I GTCTC 3 cut(s) 239, 536, 1513
AlwI GGATC 3 cut(s) 154, 628, 641
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 2 cut(s) 423, 1060
ApoI RAATTY 3 cut(s) 355, 1032, 1099
Asp718I GGTACC 1 cut(s) 1527
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 1061
AsuC2I CCSGG 2 cut(s) 123, 388
AsuHPI GGTGA 3 cut(s) 410, 881, 1268
AsuII TTCGAA 1 cut(s) 146
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 927
BaeGI GKGCMC 1 cut(s) 1192
BamHI GGATCC 1 cut(s) 633
BanI GGYRCC 1 cut(s) 1527
BanII GRGCYC 1 cut(s) 523
BbrPI CACGTG 2 cut(s) 815, 1165
BbsI GAAGAC 1 cut(s) 650
BbvCI CCTCAGC 2 cut(s) 804, 948
BccI CCATC 5 cut(s) 123, 198, 1039, 1498, 1543
BceAI ACGGC 1 cut(s) 1598
BciT130I CCWGG 1 cut(s) 1560
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 2 cut(s) 123, 388
BcoDI GTCTC 3 cut(s) 239, 536, 1513
BfaI CTAG 6 cut(s) 186, 347, 897, 944, 1406, 1425
BglII AGATCT 1 cut(s) 855
Bme1390I CCNGG 3 cut(s) 123, 388, 1560
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 1061
BmiI GGNNCC 4 cut(s) 430, 635, 1040, 1529
BmrFI CCNGG 3 cut(s) 123, 388, 1560
BmrI ACTGGG 1 cut(s) 1193
BmsI GCATC 5 cut(s) 303, 319, 1214, 1278, 1285
BmtI GCTAGC 1 cut(s) 900
BmuI ACTGGG 1 cut(s) 1193
BoxI GACNNNNGTC 1 cut(s) 1425
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 1 cut(s) 1581
Bpu10I CCTNAGC 2 cut(s) 804, 948
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 3 cut(s) 418, 1268, 1517
BpuMI CCSGG 2 cut(s) 123, 388
Bsa29I ATCGAT 1 cut(s) 377
BsaAI YACGTR 2 cut(s) 815, 1165
BsaBI GATNNNNATC 1 cut(s) 1553
BsaI GGTCTC 1 cut(s) 1513
BsaJI CCNNGG 4 cut(s) 387, 629, 1465, 1558
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 1086
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 852, 871, 1188
Bse21I CCTNAGG 1 cut(s) 927
Bse3DI GCAATG 3 cut(s) 25, 591, 1000
Bse8I GATNNNNATC 1 cut(s) 1553
BseBI CCWGG 1 cut(s) 1560
BseCI ATCGAT 1 cut(s) 377
BseDI CCNNGG 4 cut(s) 387, 629, 1465, 1558
BseGI GGATG 5 cut(s) 190, 318, 334, 1390, 1554
BseJI GATNNNNATC 1 cut(s) 1553
BseLI CCNNNNNNNGG 2 cut(s) 425, 1086
BseMI GCAATG 3 cut(s) 25, 591, 1000
BseMII CTCAG 5 cut(s) 234, 795, 896, 918, 939
BseNI ACTGG 3 cut(s) 852, 871, 1188
BseRI GAGGAG 3 cut(s) 618, 1268, 1271
BseSI GKGCMC 1 cut(s) 1192
BsgI GTGCAG 2 cut(s) 771, 1311
Bsh1236I CGCG 2 cut(s) 169, 484
BshFI GGCC 2 cut(s) 425, 1062
BshNI GGYRCC 1 cut(s) 1527
BshVI ATCGAT 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 4 cut(s) 122, 387, 426, 443
BslFI GGGAC 2 cut(s) 908, 1413
BslI CCNNNNNNNGG 2 cut(s) 425, 1086
BsmAI GTCTC 3 cut(s) 239, 536, 1513
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 908, 1413
BsmI GAATGC 3 cut(s) 214, 974, 1269
BsnI GGCC 2 cut(s) 425, 1062
Bso31I GGTCTC 1 cut(s) 1513
BsoBI CYCGRG 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 523, 1192
Bsp143I GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
BspACI CCGC 5 cut(s) 15, 361, 369, 484, 1080
BspANI GGCC 2 cut(s) 425, 1062
BspCNI CTCAG 5 cut(s) 235, 796, 895, 919, 940
BspDI ATCGAT 1 cut(s) 377
BspFNI CGCG 2 cut(s) 169, 484
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 4 cut(s) 430, 635, 1040, 1529
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 3 cut(s) 154, 628, 641
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 1527
BspTNI GGTCTC 1 cut(s) 1513
BsrDI GCAATG 3 cut(s) 25, 591, 1000
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 3 cut(s) 852, 871, 1188
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 4 cut(s) 387, 629, 1465, 1558
BssMI GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
BssT1I CCWWGG 1 cut(s) 1465
Bst2UI CCWGG 1 cut(s) 1560
Bst4CI ACNGT 4 cut(s) 530, 649, 1310, 1476
BstAPI GCANNNNNTGC 2 cut(s) 815, 1224
BstBAI YACGTR 2 cut(s) 815, 1165
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 6 cut(s) 371, 480, 898, 991, 1060, 1197
BstDEI CTNAG 5 cut(s) 243, 804, 882, 927, 948
BstF5I GGATG 5 cut(s) 190, 318, 334, 1390, 1554
BstFNI CGCG 2 cut(s) 169, 484
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 8 cut(s) 33, 44, 141, 162, 381, 636, 858, 1254
BstMAI GTCTC 3 cut(s) 239, 536, 1513
BstMBI GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
BstNI CCWGG 1 cut(s) 1560
BstNSI RCATGY 1 cut(s) 68
BstPAI GACNNNNGTC 1 cut(s) 1425
BstSCI CCNGG 3 cut(s) 121, 386, 1558
BstSLI GKGCMC 1 cut(s) 1192
BstUI CGCG 2 cut(s) 169, 484
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 3 cut(s) 159, 633, 855
BstYI RGATCY 3 cut(s) 159, 633, 855
Bsu15I ATCGAT 1 cut(s) 377
Bsu36I CCTNAGG 1 cut(s) 927
BsuRI GGCC 2 cut(s) 425, 1062
BsuTUI ATCGAT 1 cut(s) 377
BtsCI GGATG 5 cut(s) 190, 318, 334, 1390, 1554
BtsI GCAGTG 3 cut(s) 615, 754, 984
BtsIMutI CAGTG 7 cut(s) 89, 615, 754, 845, 984, 1181, 1315
Cac8I GCNNGC 6 cut(s) 371, 480, 898, 991, 1060, 1197
CaiI CAGNNNCTG 1 cut(s) 677
CciI TCATGA 1 cut(s) 543
CfoI GCGC 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 1061
ClaI ATCGAT 1 cut(s) 377
Csp6I GTAC 1 cut(s) 1528
CviAII CATG 3 cut(s) 65, 544, 830
CviQI GTAC 1 cut(s) 1528
DdeI CTNAG 5 cut(s) 243, 804, 882, 927, 948
DpnI GATC 8 cut(s) 32, 43, 140, 161, 380, 635, 857, 1253
DpnII GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
EaeI YGGCCR 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 1465
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 1513
Eco57I CTGAAG 3 cut(s) 473, 726, 767
Eco72I CACGTG 2 cut(s) 815, 1165
Eco81I CCTNAGG 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 1558
EcoT14I CCWWGG 1 cut(s) 1465
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 1465
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 68, 547, 833
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 2 cut(s) 908, 1413
FatI CATG 3 cut(s) 64, 543, 829
FauI CCCGC 2 cut(s) 354, 362
FauNDI CATATG 1 cut(s) 1513
FbaI TGATCA 1 cut(s) 138
FokI GGATG 5 cut(s) 177, 325, 341, 1397, 1541
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 6 cut(s) 186, 347, 897, 944, 1406, 1425
GlaI GCGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 1581
HaeIII GGCC 2 cut(s) 425, 1062
HapII CCGG 4 cut(s) 122, 387, 426, 443
HhaI GCGC 1 cut(s) 484
Hin1II CATG 3 cut(s) 68, 547, 833
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HindIII AAGCTT 1 cut(s) 1538
HinfI GANTC 9 cut(s) 580, 652, 674, 740, 872, 940, 979, 1076, 1342
HpaII CCGG 4 cut(s) 122, 387, 426, 443
HphI GGTGA 3 cut(s) 410, 881, 1268
Hpy166II GTNNAC 3 cut(s) 845, 1162, 1181
Hpy188III TCNNGA 8 cut(s) 71, 326, 382, 524, 544, 678, 1285, 1534
Hpy8I GTNNAC 3 cut(s) 845, 1162, 1181
HpyAV CCTTC 9 cut(s) 5, 174, 247, 293, 701, 760, 1002, 1019, 1157
HpyCH4III ACNGT 4 cut(s) 530, 649, 1310, 1476
HpyCH4IV ACGT 3 cut(s) 248, 814, 1164
HpyF3I CTNAG 5 cut(s) 243, 804, 882, 927, 948
HpySE526I ACGT 3 cut(s) 248, 814, 1164
Hsp92II CATG 3 cut(s) 68, 547, 833
HspAI GCGC 1 cut(s) 482
KpnI GGTACC 1 cut(s) 1531
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
LmnI GCTCC 7 cut(s) 73, 154, 223, 472, 1038, 1517, 1562
LweI GCATC 5 cut(s) 303, 319, 1214, 1278, 1285
MaeI CTAG 6 cut(s) 186, 347, 897, 944, 1406, 1425
MaeII ACGT 3 cut(s) 248, 814, 1164
MaeIII GTNAC 4 cut(s) 60, 497, 587, 649
MalI GATC 8 cut(s) 32, 43, 140, 161, 380, 635, 857, 1253
MboI GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
MboII GAAGA 8 cut(s) 20, 62, 145, 655, 919, 965, 1579, 1603
MfeI CAATTG 3 cut(s) 227, 819, 1363
MflI RGATCY 3 cut(s) 159, 633, 855
MhlI GDGCHC 2 cut(s) 523, 1192
MlyI GAGTC 5 cut(s) 589, 646, 749, 934, 1351
MmeI TCCRAC 3 cut(s) 132, 156, 1435
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 2 cut(s) 111, 1170
MspA1I CMGCKG 2 cut(s) 610, 920
MspI CCGG 4 cut(s) 122, 387, 426, 443
MspR9I CCNGG 3 cut(s) 123, 388, 1560
MunI CAATTG 3 cut(s) 227, 819, 1363
Mva1269I GAATGC 3 cut(s) 214, 974, 1269
MvaI CCWGG 1 cut(s) 1560
MvnI CGCG 2 cut(s) 169, 484
NciI CCSGG 2 cut(s) 123, 388
NdeI CATATG 1 cut(s) 1513
NdeII GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 3 cut(s) 68, 547, 833
NlaIV GGNNCC 4 cut(s) 430, 635, 1040, 1529
NmuCI GTSAC 2 cut(s) 497, 649
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 68
NspV TTCGAA 1 cut(s) 146
PagI TCATGA 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 3 cut(s) 214, 974, 1269
PfeI GAWTC 4 cut(s) 674, 872, 979, 1076
PleI GAGTC 5 cut(s) 588, 646, 748, 934, 1350
PmaCI CACGTG 2 cut(s) 815, 1165
PmlI CACGTG 2 cut(s) 815, 1165
PpsI GAGTC 5 cut(s) 588, 646, 748, 934, 1350
Ppu21I YACGTR 2 cut(s) 815, 1165
PshAI GACNNNNGTC 1 cut(s) 1425
Psp6I CCWGG 1 cut(s) 1558
PspCI CACGTG 2 cut(s) 815, 1165
PspGI CCWGG 1 cut(s) 1558
PspN4I GGNNCC 4 cut(s) 430, 635, 1040, 1529
PspPI GGNCC 1 cut(s) 1061
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 3 cut(s) 159, 633, 855
PvuII CAGCTG 2 cut(s) 610, 920
RsaI GTAC 1 cut(s) 1529
RsaNI GTAC 1 cut(s) 1528
SaqAI TTAA 2 cut(s) 111, 1170
Sau3AI GATC 8 cut(s) 30, 41, 138, 159, 378, 633, 855, 1251
Sau96I GGNCC 1 cut(s) 1061
SchI GAGTC 5 cut(s) 589, 646, 749, 934, 1351
ScrFI CCNGG 3 cut(s) 123, 388, 1560
SduI GDGCHC 2 cut(s) 523, 1192
SfaNI GCATC 5 cut(s) 303, 319, 1214, 1278, 1285
SfuI TTCGAA 1 cut(s) 146
SmlI CTYRAG 3 cut(s) 433, 1283, 1532
SmoI CTYRAG 3 cut(s) 433, 1283, 1532
SsiI CCGC 5 cut(s) 15, 361, 369, 484, 1080
SspMI CTAG 6 cut(s) 186, 347, 897, 944, 1406, 1425
StyD4I CCNGG 3 cut(s) 121, 386, 1558
StyI CCWWGG 1 cut(s) 1465
TaaI ACNGT 4 cut(s) 530, 649, 1310, 1476
TaiI ACGT 3 cut(s) 251, 817, 1167
TauI GCSGC 2 cut(s) 18, 487
TfiI GAWTC 4 cut(s) 674, 872, 979, 1076
Tru1I TTAA 2 cut(s) 111, 1170
Tru9I TTAA 2 cut(s) 111, 1170
TscAI CASTG 7 cut(s) 96, 622, 754, 852, 991, 1188, 1315
TseFI GTSAC 2 cut(s) 497, 649
Tsp45I GTSAC 2 cut(s) 497, 649
TspDTI ATGAA 3 cut(s) 560, 570, 1256
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 7 cut(s) 96, 622, 754, 852, 991, 1188, 1315
XapI RAATTY 3 cut(s) 355, 1032, 1099
XceI RCATGY 1 cut(s) 68
XspI CTAG 6 cut(s) 186, 347, 897, 944, 1406, 1425
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.