pycom07g12380

Armadillo/beta-catenin-like repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
13720401 .. 13722307
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12380.1

Sequence Viewer

Length: 1812 bp
ATGGTAGAAGAAGGCGGCAATGAGGTTCCGATTGACACACGATCGGTGGAAGAATGGTTGTCGCATGCTAGGGAGCTTGTTCCATTGGCATTGAACAAGGCAAGAGAGGTTAAGGGGTTTCCGGGTCGATGGAAGACGATCATTTCAAAGTTGGAGCAAATCCCTTCGCGTTTATCAGACTTGTCTAGTCATCCGTGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGTCGGTATCCAAGACGGTTAAGGAAGTTATTGAATTGGCGGAGTTTTGTATGGGGGAGAAACACGAAGGAAAACTTCGGATGCAGAGCAATCTGGATGCACTGTCTGGGAAACTGGATTTGAATTTACGGGATTGCGGGCTTTTGATCAAGACCGGGGTGCTTGGTGAGGCTACTTTGCCTTTAGCTATGACCGGTTCTTCAAATGAGCCTGAGGCTGCTTCTAATGGTAACATAAGGGAGGTGCTTGCACGGCTTCAGATTGGTCACTTGGACGCGAAACATAGAGCTCTTGACAGTCTTGTTGAGGTCATGAAAGAGGATGAGAAGAATGTGCTGTCAGTTATGAGCCGCAGCAACATTGCTGCTTTAGTCCAGCTGCTCACTGCAACATCTCCTCGTATCCGAGAAAAGACTGTAACTGTAATTTGCTCGCTTGCAGAATCCGGAAGTTGTGAAAATTGGCTTGTTTCTGAAGGGGTTTTGCCACCACTAATCAGGCTTGTTGAGTCTGGTAGTGCAGTTGGTAAAGAGAAGGCTACAATTTCGCTTCAGAGGTTGTCAATGTCCGCTGAAGCAGCACGCGCAATTGTTGGGCATGGCGGGGTTCGTCCACTGGTTGAGATCTGCCAAACTGGTGATTCTGTTTCTCAGGCTGCTTCAGCTAGCACTTTGAAGAACATATCTGCTGTCCCGGAGGTTCGACAAGCTCTAGCTGAGGAAGGCATTGTAAAAGTTATGATCAATCTGCTTGATTGTGGAATTTTATTGGGTGCAAAAGAATATGCAGCAGAGTGCTTGCAGAATCTCACTGCAAGCAATGACAATCTCAGAAGGTCTGTAATATCGGAAGGTGGAATTCGGAGCCTATTGGCTTATCTCGCTGGATCATTGCCACAAGAGTCTGCAGTTGGGGCATTGAGGAATTTGGTTGGCTCGGTTTCTATGGAAGTTTTGGTTTCTCTTGGTTTCCTTCCATGCATTGTTCATGTGCTTAAATCCGGTTCACTAGGCGCACAGCAGGCTGCTGCATCTGCAATTTGCAAGGTTTGCAGCTCTACAGAGATGAAAAAACTGATTGGTGAAGCGGGGTGCCTTCCTCTCCTTGTCAAGATGCTCGAGGCTAAATCAAACAGTGCGAGAGAGGTTGCAGCACAGGCAGTTTCGAGCCTGATGACCCTTTCCCACAATTGCAGAGAAGTGAAAAGGGGTGACAAAAGTGTTCCAAATCTAGTCCAACTACTTGACCCTAGTCCTCAAAACACGGCAAAAAAATACGCAGTTTGTTGCCTCGGATTACTGTGTTCAAGTAAGAAATGCAAGAAGCTGATGGTCTCGTATGGAGCAATCGGGTACCTCAAGAAGCTTACAGAGATGGACATCCCCGGAGCGAAGAAGCTACTCGAACGTAGCTGTTTCATGGTCTATATGAAACGTAGTTTTTCATTTGAACTTGGCAAGCCTGGCGTAATCTATGTTATGTATGTCCTATTATTTATAAGTTTATTAAAATATAGAATCTCTGTAATTCAGTATGTTTTTCCTTCTCTACTATCTGGTGTAGTTTCTGGGATCCCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

604

Amino Acids

64.81

Weight (kDa)

8.77

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 22 - 131 1.6e-37 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 268 - 477 5e-13 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1730
Acc65I GGTACC 1 cut(s) 1584
AccB1I GGYRCC 2 cut(s) 1323, 1584
AccII CGCG 3 cut(s) 169, 509, 816
AccIII TCCGGA 1 cut(s) 677
AciI CCGC 7 cut(s) 15, 272, 369, 583, 801, 834, 1319
AclWI GGATC 3 cut(s) 1126, 1798, 1811
AcsI RAATTY 4 cut(s) 355, 993, 1089, 1156
AcuI CTGAAG 5 cut(s) 473, 726, 767, 825, 876
AfaI GTAC 1 cut(s) 1586
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 8 cut(s) 94, 147, 266, 355, 435, 907, 1539, 1682
AjnI CCWGG 1 cut(s) 1693
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 1570
AlwI GGATC 3 cut(s) 1126, 1798, 1811
Ama87I CYCGRG 1 cut(s) 1349
Aor13HI TCCGGA 1 cut(s) 677
ApoI RAATTY 4 cut(s) 355, 993, 1089, 1156
AsiGI ACCGGT 1 cut(s) 425
Asp718I GGTACC 1 cut(s) 1584
AspLEI GCGC 2 cut(s) 818, 1247
AsuC2I CCSGG 4 cut(s) 123, 388, 926, 1617
AsuHPI GGTGA 4 cut(s) 410, 881, 1325, 1454
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 1349
AxyI CCTNAGG 1 cut(s) 444
BamHI GGATCC 1 cut(s) 1803
BanI GGYRCC 2 cut(s) 1323, 1584
BanII GRGCYC 1 cut(s) 523
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 948
BccI CCATC 3 cut(s) 123, 1555, 1600
BceAI ACGGC 2 cut(s) 500, 1512
BciT130I CCWGG 1 cut(s) 1695
BciVI GTATCC 2 cut(s) 250, 644
BclI TGATCA 2 cut(s) 378, 972
BcnI CCSGG 4 cut(s) 123, 388, 926, 1617
BcoDI GTCTC 1 cut(s) 1570
BfaI CTAG 7 cut(s) 69, 186, 897, 944, 1241, 1463, 1482
BfmI CTRYAG 2 cut(s) 1137, 1290
BfuI GTATCC 2 cut(s) 250, 644
BglII AGATCT 1 cut(s) 855
Bme1390I CCNGG 5 cut(s) 123, 388, 926, 1617, 1695
BmeT110I CYCGRG 1 cut(s) 1349
BmiI GGNNCC 5 cut(s) 27, 1097, 1325, 1586, 1805
BmrFI CCNGG 5 cut(s) 123, 388, 926, 1617, 1695
BmsI GCATC 4 cut(s) 303, 319, 1271, 1335
BmtI GCTAGC 1 cut(s) 900
BoxI GACNNNNGTC 1 cut(s) 1482
BpiI GAAGAC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 1574
BpuMI CCSGG 4 cut(s) 123, 388, 926, 1617
BsaBI GATNNNNATC 1 cut(s) 1610
BsaI GGTCTC 1 cut(s) 1570
BsaJI CCNNGG 3 cut(s) 387, 1522, 1615
BsaWI WCCGGW 3 cut(s) 425, 677, 1232
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 351, 852, 871
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 4 cut(s) 25, 591, 1057, 1121
Bse8I GATNNNNATC 1 cut(s) 1610
BseAI TCCGGA 1 cut(s) 677
BseBI CCWGG 1 cut(s) 1695
BseDI CCNNGG 3 cut(s) 387, 1522, 1615
BseGI GGATG 5 cut(s) 190, 318, 334, 559, 1611
BseJI GATNNNNATC 1 cut(s) 1610
BseMI GCAATG 4 cut(s) 25, 591, 1057, 1121
BseMII CTCAG 4 cut(s) 435, 896, 939, 1075
BseNI ACTGG 3 cut(s) 351, 852, 871
BseRI GAGGAG 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 3 cut(s) 169, 509, 816
Bsh1285I CGRYCG 1 cut(s) 44
BshNI GGYRCC 2 cut(s) 1323, 1584
BshTI ACCGGT 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 1349
BsiSI CCGG 7 cut(s) 122, 387, 426, 678, 926, 1233, 1617
BslFI GGGAC 1 cut(s) 908
BsmAI GTCTC 1 cut(s) 1570
BsmFI GGGAC 1 cut(s) 908
BsmI GAATGC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 1570
BsoBI CYCGRG 1 cut(s) 1349
Bsp1286I GDGCHC 1 cut(s) 523
Bsp13I TCCGGA 1 cut(s) 677
Bsp143I GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
BspACI CCGC 7 cut(s) 15, 272, 369, 583, 801, 834, 1319
BspCNI CTCAG 4 cut(s) 436, 895, 940, 1074
BspEI TCCGGA 1 cut(s) 677
BspFNI CGCG 3 cut(s) 169, 509, 816
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 5 cut(s) 27, 1097, 1325, 1586, 1805
BspMAI CTGCAG 1 cut(s) 1141
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 3 cut(s) 1126, 1798, 1811
BspT107I GGYRCC 2 cut(s) 1323, 1584
BspTNI GGTCTC 1 cut(s) 1570
BsrDI GCAATG 4 cut(s) 25, 591, 1057, 1121
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 3 cut(s) 351, 852, 871
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 3 cut(s) 387, 1522, 1615
BssMI GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
Bst2UI CCWGG 1 cut(s) 1695
Bst4CI ACNGT 7 cut(s) 250, 336, 530, 649, 655, 1367, 1533
BstAPI GCANNNNNTGC 1 cut(s) 1281
BstDEI CTNAG 4 cut(s) 444, 882, 948, 1061
BstF5I GGATG 5 cut(s) 190, 318, 334, 559, 1611
BstFNI CGCG 3 cut(s) 169, 509, 816
BstHHI GCGC 2 cut(s) 818, 1247
BstKTI GATC 7 cut(s) 44, 141, 381, 858, 975, 1121, 1806
BstMAI GTCTC 1 cut(s) 1570
BstMBI GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
BstMCI CGRYCG 1 cut(s) 44
BstNI CCWGG 1 cut(s) 1695
BstNSI RCATGY 1 cut(s) 68
BstPAI GACNNNNGTC 1 cut(s) 1482
BstSCI CCNGG 5 cut(s) 121, 386, 924, 1615, 1693
BstSFI CTRYAG 2 cut(s) 1137, 1290
BstUI CGCG 3 cut(s) 169, 509, 816
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 855, 1803
BstYI RGATCY 2 cut(s) 855, 1803
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 2 cut(s) 250, 644
BtsCI GGATG 5 cut(s) 190, 318, 334, 559, 1611
BtsI GCAGTG 2 cut(s) 615, 1041
BtsIMutI CAGTG 5 cut(s) 332, 615, 845, 1041, 1372
CciI TCATGA 1 cut(s) 543
CfoI GCGC 2 cut(s) 818, 1247
Cfr10I RCCGGY 1 cut(s) 425
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 1585
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 6 cut(s) 65, 544, 830, 1209, 1220, 1651
CviQI GTAC 1 cut(s) 1585
DdeI CTNAG 4 cut(s) 444, 882, 948, 1061
DpnI GATC 7 cut(s) 43, 140, 380, 857, 974, 1120, 1805
DpnII GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 1570
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 5 cut(s) 473, 726, 767, 825, 876
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 1349
EcoICRI GAGCTC 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 1 cut(s) 1693
EcoT22I ATGCAT 1 cut(s) 1214
EcoT38I GRGCYC 1 cut(s) 523
FaeI CATG 6 cut(s) 68, 547, 833, 1212, 1223, 1654
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 908
FatI CATG 6 cut(s) 64, 543, 829, 1208, 1219, 1650
FauI CCCGC 3 cut(s) 362, 827, 1312
FbaI TGATCA 2 cut(s) 378, 972
FokI GGATG 5 cut(s) 177, 325, 341, 566, 1598
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 7 cut(s) 69, 186, 897, 944, 1241, 1463, 1482
GlaI GCGC 2 cut(s) 817, 1246
HapII CCGG 7 cut(s) 122, 387, 426, 678, 926, 1233, 1617
HgaI GACGC 1 cut(s) 515
HhaI GCGC 2 cut(s) 818, 1247
Hin1II CATG 6 cut(s) 68, 547, 833, 1212, 1223, 1654
Hin6I GCGC 2 cut(s) 816, 1245
HinP1I GCGC 2 cut(s) 816, 1245
HindIII AAGCTT 1 cut(s) 1595
HinfI GANTC 6 cut(s) 674, 740, 872, 1036, 1133, 1749
HpaII CCGG 7 cut(s) 122, 387, 426, 678, 926, 1233, 1617
HphI GGTGA 4 cut(s) 410, 881, 1325, 1454
Hpy166II GTNNAC 2 cut(s) 845, 1238
Hpy188III TCNNGA 7 cut(s) 326, 382, 524, 544, 678, 1342, 1591
Hpy8I GTNNAC 2 cut(s) 845, 1238
HpyCH4III ACNGT 7 cut(s) 250, 336, 530, 649, 655, 1367, 1533
HpyCH4IV ACGT 2 cut(s) 1639, 1666
HpyF3I CTNAG 4 cut(s) 444, 882, 948, 1061
HpySE526I ACGT 2 cut(s) 1639, 1666
Hsp92II CATG 6 cut(s) 68, 547, 833, 1212, 1223, 1654
HspAI GCGC 2 cut(s) 816, 1245
Kpn2I TCCGGA 1 cut(s) 677
KpnI GGTACC 1 cut(s) 1588
Ksp22I TGATCA 2 cut(s) 378, 972
Kzo9I GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
LmnI GCTCC 6 cut(s) 73, 154, 223, 1095, 1574, 1619
LweI GCATC 4 cut(s) 303, 319, 1271, 1335
MaeI CTAG 7 cut(s) 69, 186, 897, 944, 1241, 1463, 1482
MaeII ACGT 2 cut(s) 1639, 1666
MaeIII GTNAC 4 cut(s) 461, 497, 649, 1442
MalI GATC 7 cut(s) 43, 140, 380, 857, 974, 1120, 1805
MboI GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
MboII GAAGA 7 cut(s) 20, 62, 145, 423, 571, 919, 1636
MfeI CAATTG 3 cut(s) 227, 819, 1420
MflI RGATCY 2 cut(s) 855, 1803
MhlI GDGCHC 1 cut(s) 523
MlyI GAGTC 2 cut(s) 749, 1142
MmeI TCCRAC 2 cut(s) 132, 1492
Mph1103I ATGCAT 1 cut(s) 1214
MroI TCCGGA 1 cut(s) 677
MseI TTAA 4 cut(s) 111, 252, 1227, 1739
MspA1I CMGCKG 2 cut(s) 610, 803
MspI CCGG 7 cut(s) 122, 387, 426, 678, 926, 1233, 1617
MspR9I CCNGG 5 cut(s) 123, 388, 926, 1617, 1695
MunI CAATTG 3 cut(s) 227, 819, 1420
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 1695
MvnI CGCG 3 cut(s) 169, 509, 816
NciI CCSGG 4 cut(s) 123, 388, 926, 1617
NdeII GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 6 cut(s) 68, 547, 833, 1212, 1223, 1654
NlaIV GGNNCC 5 cut(s) 27, 1097, 1325, 1586, 1805
NmuCI GTSAC 2 cut(s) 497, 1442
NsiI ATGCAT 1 cut(s) 1214
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PaeR7I CTCGAG 1 cut(s) 1349
PagI TCATGA 1 cut(s) 543
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 4 cut(s) 674, 872, 1036, 1749
PfoI TCCNGGA 1 cut(s) 924
PinAI ACCGGT 1 cut(s) 425
Ple19I CGATCG 1 cut(s) 44
PleI GAGTC 2 cut(s) 748, 1141
PpsI GAGTC 2 cut(s) 748, 1141
PshAI GACNNNNGTC 1 cut(s) 1482
PsiI TTATAA 1 cut(s) 1730
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 1693
PspGI CCWGG 1 cut(s) 1693
PspN4I GGNNCC 5 cut(s) 27, 1097, 1325, 1586, 1805
PspXI VCTCGAGB 1 cut(s) 1349
PstI CTGCAG 1 cut(s) 1141
PsuI RGATCY 2 cut(s) 855, 1803
PvuI CGATCG 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 1 cut(s) 1586
RsaNI GTAC 1 cut(s) 1585
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 4 cut(s) 111, 252, 1227, 1739
Sau3AI GATC 7 cut(s) 41, 138, 378, 855, 972, 1118, 1803
SchI GAGTC 2 cut(s) 749, 1142
ScrFI CCNGG 5 cut(s) 123, 388, 926, 1617, 1695
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 4 cut(s) 303, 319, 1271, 1335
SfcI CTRYAG 2 cut(s) 1137, 1290
Sfr274I CTCGAG 1 cut(s) 1349
SlaI CTCGAG 1 cut(s) 1349
SmlI CTYRAG 2 cut(s) 1349, 1589
SmoI CTYRAG 2 cut(s) 1349, 1589
SphI GCATGC 1 cut(s) 68
SsiI CCGC 7 cut(s) 15, 272, 369, 583, 801, 834, 1319
SspMI CTAG 7 cut(s) 69, 186, 897, 944, 1241, 1463, 1482
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 5 cut(s) 121, 386, 924, 1615, 1693
TaaI ACNGT 7 cut(s) 250, 336, 530, 649, 655, 1367, 1533
TaiI ACGT 2 cut(s) 1642, 1669
TaqI TCGA 5 cut(s) 127, 934, 1350, 1397, 1635
TauI GCSGC 2 cut(s) 18, 585
TfiI GAWTC 4 cut(s) 674, 872, 1036, 1749
Tru1I TTAA 4 cut(s) 111, 252, 1227, 1739
Tru9I TTAA 4 cut(s) 111, 252, 1227, 1739
TscAI CASTG 5 cut(s) 339, 622, 852, 1048, 1372
TseFI GTSAC 2 cut(s) 497, 1442
Tsp45I GTSAC 2 cut(s) 497, 1442
TspDTI ATGAA 6 cut(s) 560, 1208, 1313, 1639, 1665, 1676
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 5 cut(s) 339, 622, 852, 1048, 1372
XapI RAATTY 4 cut(s) 355, 993, 1089, 1156
XceI RCATGY 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 1349
XspI CTAG 7 cut(s) 69, 186, 897, 944, 1241, 1463, 1482
Zsp2I ATGCAT 1 cut(s) 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.