Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005448

Physical Location & Seq

Genomic Coordinates Forward (+)

32661567 .. 32663063

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGATTTCATCCCCTTTCCTTCCCCTTCAATTTCTGCACCATTTCTGGCCTTGTGCACGAGTAAGATCACTTCCTAAGCTTTTCTTTCACATGATGAAGAAGGCAGATGCATATCAACATGTTCTACATGCACAGCTTCAGTTACAAATGGTAACTATTCAAGGAGTTACCATAAACTCTTCACTCATGAATAAATTGCAGAAACCAGACCAAAGAAGAATGAGAAAGAATCGAATGAAGAGGAACAGATGGATAGTCCTAGTTACATTACCCTCCCTCTTGCTATTCATCATCTTCTTCAATGTACAGTACTTTCTAAAGCCTCCACCACCAAATCCTTCCTCCAAATTATCCACCATGTACCCTAATCAAACCCAATTCAGCCTCATGATCGGGATTCTAACCCGGGCCGACAACTACGACCGCCGCCACTTCCTCCGCCTCATCTACGGCATCCAGTCATCTCCTCTTGCCACCATCCACGTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCGAGCAGCGTGTCCTAATCGCCCTCGAAATGCTTCGTTTCGATGACATCCTCATTCTCAACTGCACTGAGAACATGAACAGCGGCAAAACCTACACCTACTTCTCCTCGCTCCCCCAACTCCTCCGGCGAAAATACGACTACGTAATGAAGGCAGACGACGACGTTTTCATCCGGCTTGAGCCACTTGCCTTGTCGCTCAAGGCACTGCCTAGGGTGGATTTTTATTATGGATTTGTTATCCCTTGTGCTAGCATGAATCCCTTTGTGGAGTACATGTCCGGGATGGGGTTTTTGTTGTCGTGGGATTTGGTGGAGTGGATTGGAAGCTCTGAAATTCCCAAGGAGAGTGTGTTTGGTCCCGAGGACAAGTTGGTCGGAAAATGGTTGAAGATGGGAAACAAGGCGAAGAACAGGTTTAGTAATAAGCCGGCCATGTATGATTATCCGGGAACAAATGGGAGGTGCTCGCATGAGCTTATACCGGAGACGGTGGCTGTTCATAGGCTCAAGAGGTGGGATCAGTGGTTGCGTGTGCTTGAATATTTCAATGTAACGAAGGGATTAAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

362

Amino Acids

42.42

Weight (kDa)

9.78

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45720 AT2G45720 AT2G45720 AT2G45720 AT2G45720
fragaria_vesca	FvH4_7g13170 FvH4_7g13170 FvH4_7g13170 FvH4_7g13170 FvH4_7g13170
malus_domestica	MD01G1051300.v1.1
prunus_persica	Prupe.2G155000_v2.0.a1 Prupe.2G155000_v2.0.a1
pyrus_communis	pycom01g07600 pycom07g12380
rosa_chinensis	RchiOBHm_Chr1g0352331
rosa_laevigata	RLG00000028341
rosa_multiflora	Rmu_sc0008152.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303010
rosa_rugosa	Rorug01G0226800 Rorug01G0226900 Rorug01G0227000 Rorug01G0227100
rosa_samantha	Rh1AG241100 Rh1BG212000 Rh1CG224900 Rh1DG238400
rosa_wichuraiana	Rw1G020880 Rw1G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	887
AciI	CCGC	4 cut(s)	424, 427, 439, 597
AclWI	GGATC	1 cut(s)	1041
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	1 cut(s)	849
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	4 cut(s)	306, 311, 362, 788
AfiI	CCNNNNNNNGG	1 cut(s)	801
AflIII	ACRYGT	2 cut(s)	118, 789
AgsI	TTSAA	6 cut(s)	29, 161, 301, 904, 1055, 1063
AjiI	CACGTC	1 cut(s)	484
AluBI	AGCT	4 cut(s)	79, 136, 843, 991
AluI	AGCT	4 cut(s)	79, 136, 843, 991
Alw21I	GWGCWC	2 cut(s)	58, 983
Alw26I	GTCTC	1 cut(s)	995
Alw44I	GTGCAC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	1041
Ama87I	CYCGRG	3 cut(s)	405, 515, 875
AoxI	GGCC	3 cut(s)	47, 408, 945
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	501, 520
ApoI	RAATTY	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	546
AspA2I	CCTAGG	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	408, 872
AsuC2I	CCSGG	4 cut(s)	406, 407, 796, 963
AsuNHI	GCTAGC	1 cut(s)	764
AvaI	CYCGRG	3 cut(s)	405, 515, 875
AvaII	GGWCC	1 cut(s)	872
AvrII	CCTAGG	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BauI	CACGAG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	2 cut(s)	58, 983
BbvI	GCAGC	2 cut(s)	513, 532
BccI	CCATC	4 cut(s)	243, 485, 793, 901
BceAI	ACGGC	1 cut(s)	466
BcnI	CCSGG	4 cut(s)	406, 407, 796, 963
BcoDI	GTCTC	1 cut(s)	995
BfaI	CTAG	4 cut(s)	260, 726, 765, 1087
BfmI	CTRYAG	1 cut(s)	499
BisI	GCNGC	4 cut(s)	427, 502, 521, 598
BlnI	CCTAGG	1 cut(s)	725
BlsI	GCNGC	4 cut(s)	428, 503, 522, 599
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	4 cut(s)	406, 407, 796, 963
Bme18I	GGWCC	1 cut(s)	872
BmeT110I	CYCGRG	3 cut(s)	405, 515, 875
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	408, 872
BmiI	GGNNCC	1 cut(s)	874
BmrFI	CCNGG	4 cut(s)	406, 407, 796, 963
BmsI	GCATC	2 cut(s)	97, 462
BmtI	GCTAGC	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	3 cut(s)	698, 713, 1007
BpuMI	CCSGG	4 cut(s)	406, 407, 796, 963
BsaAI	YACGTR	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	405, 725, 855, 876
BsaWI	WCCGGW	1 cut(s)	997
BsaXI	ACNNNNNCTCC	4 cut(s)	776, 806, 851, 881
Bsc4I	CCNNNNNNNGG	1 cut(s)	801
Bse118I	RCCGGY	1 cut(s)	943
Bse1I	ACTGG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	405, 725, 855, 876
BseGI	GGATG	6 cut(s)	8, 453, 477, 561, 684, 804
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	801
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	3 cut(s)	456, 610, 626
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	513, 532
BsgI	GTGCAG	2 cut(s)	20, 562
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	3 cut(s)	49, 410, 947
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	2 cut(s)	58, 983
BsiHKCI	CYCGRG	3 cut(s)	405, 515, 875
BsiSI	CCGG	7 cut(s)	406, 640, 688, 795, 944, 962, 998
BslFI	GGGAC	1 cut(s)	858
BslI	CCNNNNNNNGG	1 cut(s)	801
BsmAI	GTCTC	1 cut(s)	995
BsmBI	CGTCTC	1 cut(s)	995
BsmFI	GGGAC	1 cut(s)	858
BsnI	GGCC	3 cut(s)	49, 410, 947
BsoBI	CYCGRG	3 cut(s)	405, 515, 875
Bsp1286I	GDGCHC	2 cut(s)	58, 983
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	65, 390, 1033
BspACI	CCGC	4 cut(s)	424, 427, 439, 597
BspANI	GGCC	3 cut(s)	49, 410, 947
BspCNI	CTCAG	1 cut(s)	574
BspHI	TCATGA	2 cut(s)	186, 387
BspLI	GGNNCC	1 cut(s)	874
BspMAI	CTGCAG	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	1041
BsrFI	RCCGGY	1 cut(s)	943
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	943
BssECI	CCNNGG	4 cut(s)	405, 725, 855, 876
BssMI	GATC	3 cut(s)	65, 390, 1033
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	725, 855
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	309, 1006
Bst6I	CTCTTC	2 cut(s)	184, 233
BstAUI	TGTACA	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	766, 945, 983
BstDEI	CTNAG	2 cut(s)	75, 582
BstF5I	GGATG	6 cut(s)	8, 453, 477, 561, 684, 804
BstKTI	GATC	3 cut(s)	68, 393, 1036
BstMAI	GTCTC	1 cut(s)	995
BstMBI	GATC	3 cut(s)	65, 390, 1033
BstMCI	CGRYCG	1 cut(s)	424
BstNSI	RCATGY	3 cut(s)	122, 131, 793
BstSCI	CCNGG	4 cut(s)	404, 405, 794, 961
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	58
BstSNI	TACGTA	1 cut(s)	658
BstV1I	GCAGC	2 cut(s)	513, 532
BstV2I	GAAGAC	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	49, 410, 947
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	6 cut(s)	8, 453, 477, 561, 684, 804
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	3 cut(s)	579, 719, 1043
Cac8I	GCNNGC	3 cut(s)	766, 945, 983
CciI	TCATGA	2 cut(s)	186, 387
Cfr10I	RCCGGY	1 cut(s)	943
Cfr13I	GGNCC	2 cut(s)	408, 872
Cfr9I	CCCGGG	1 cut(s)	405
Csp6I	GTAC	4 cut(s)	305, 310, 361, 787
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviQI	GTAC	4 cut(s)	305, 310, 361, 787
DdeI	CTNAG	2 cut(s)	75, 582
DpnI	GATC	3 cut(s)	67, 392, 1035
DpnII	GATC	3 cut(s)	65, 390, 1033
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	2 cut(s)	184, 233
EarI	CTCTTC	2 cut(s)	184, 233
EciI	GGCGGA	1 cut(s)	428
Eco105I	TACGTA	1 cut(s)	658
Eco130I	CCWWGG	2 cut(s)	725, 855
Eco47I	GGWCC	1 cut(s)	872
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	3 cut(s)	405, 515, 875
EcoT14I	CCWWGG	2 cut(s)	725, 855
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	725, 855
Esp3I	CGTCTC	1 cut(s)	995
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 479, 511
FaqI	GGGAC	1 cut(s)	858
Fnu4HI	GCNGC	4 cut(s)	427, 502, 521, 598
FokI	GGATG	5 cut(s)	440, 464, 548, 671, 811
Fsp4HI	GCNGC	4 cut(s)	427, 502, 521, 598
FspBI	CTAG	4 cut(s)	260, 726, 765, 1087
GluI	GCNGC	4 cut(s)	427, 502, 521, 598
HaeIII	GGCC	3 cut(s)	49, 410, 947
HapII	CCGG	7 cut(s)	406, 640, 688, 795, 944, 962, 998
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	3 cut(s)	229, 397, 772
HpaII	CCGG	7 cut(s)	406, 640, 688, 795, 944, 962, 998
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	847, 893
Hpy188III	TCNNGA	5 cut(s)	187, 388, 394, 875, 1024
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	2 cut(s)	677, 680
HpyAV	CCTTC	6 cut(s)	29, 35, 94, 348, 658, 1066
HpyCH4III	ACNGT	2 cut(s)	309, 1006
HpyCH4IV	ACGT	3 cut(s)	483, 657, 678
HpyCH4V	TGCA	7 cut(s)	37, 56, 110, 131, 199, 501, 579
HpyF3I	CTNAG	2 cut(s)	75, 582
HpySE526I	ACGT	3 cut(s)	483, 657, 678
KroI	GCCGGC	1 cut(s)	943
KroNI	GCCGGC	1 cut(s)	945
Kzo9I	GATC	3 cut(s)	65, 390, 1033
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	2 cut(s)	513, 532
LweI	GCATC	2 cut(s)	97, 462
MaeI	CTAG	4 cut(s)	260, 726, 765, 1087
MaeII	ACGT	3 cut(s)	483, 657, 678
MaeIII	GTNAC	5 cut(s)	141, 151, 166, 262, 1066
MalI	GATC	3 cut(s)	67, 392, 1035
MboI	GATC	3 cut(s)	65, 390, 1033
MboII	GAAGA	9 cut(s)	109, 171, 228, 250, 286, 289, 487, 916, 934
MhlI	GDGCHC	2 cut(s)	58, 983
MluCI	AATT	5 cut(s)	29, 194, 347, 377, 849
MmeI	TCCRAC	1 cut(s)	871
Mph1103I	ATGCAT	1 cut(s)	112
MroNI	GCCGGC	1 cut(s)	943
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	1 cut(s)	1079
MspA1I	CMGCKG	1 cut(s)	597
MspI	CCGG	7 cut(s)	406, 640, 688, 795, 944, 962, 998
MspR9I	CCNGG	4 cut(s)	406, 407, 796, 963
NaeI	GCCGGC	1 cut(s)	945
NciI	CCSGG	4 cut(s)	406, 407, 796, 963
NdeII	GATC	3 cut(s)	65, 390, 1033
NgoMIV	GCCGGC	1 cut(s)	943
NheI	GCTAGC	1 cut(s)	764
NlaIV	GGNNCC	1 cut(s)	874
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	3 cut(s)	122, 131, 793
PagI	TCATGA	2 cut(s)	186, 387
PciI	ACATGT	2 cut(s)	118, 789
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	945
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	3 cut(s)	229, 397, 772
PfoI	TCCNGGA	2 cut(s)	794, 961
PkrI	GCNGC	4 cut(s)	428, 503, 522, 599
Ppu21I	YACGTR	1 cut(s)	658
PscI	ACATGT	2 cut(s)	118, 789
PspN4I	GGNNCC	1 cut(s)	874
PspPI	GGNCC	2 cut(s)	408, 872
PstI	CTGCAG	1 cut(s)	503
RsaI	GTAC	4 cut(s)	306, 311, 362, 788
RsaNI	GTAC	4 cut(s)	305, 310, 361, 787
SaqAI	TTAA	1 cut(s)	1079
SatI	GCNGC	4 cut(s)	427, 502, 521, 598
Sau3AI	GATC	3 cut(s)	65, 390, 1033
Sau96I	GGNCC	2 cut(s)	408, 872
ScaI	AGTACT	1 cut(s)	311
ScrFI	CCNGG	4 cut(s)	406, 407, 796, 963
SduI	GDGCHC	2 cut(s)	58, 983
SfaNI	GCATC	2 cut(s)	97, 462
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	872
SmaI	CCCGGG	1 cut(s)	407
SmlI	CTYRAG	3 cut(s)	692, 713, 1022
SmoI	CTYRAG	3 cut(s)	692, 713, 1022
SnaBI	TACGTA	1 cut(s)	658
Sse9I	AATT	5 cut(s)	29, 194, 347, 377, 849
SsiI	CCGC	4 cut(s)	424, 427, 439, 597
SspI	AATATT	1 cut(s)	1058
SspMI	CTAG	4 cut(s)	260, 726, 765, 1087
StyD4I	CCNGG	4 cut(s)	404, 405, 794, 961
StyI	CCWWGG	2 cut(s)	725, 855
TaaI	ACNGT	2 cut(s)	309, 1006
TaiI	ACGT	3 cut(s)	486, 660, 681
TaqI	TCGA	3 cut(s)	232, 540, 555
TasI	AATT	5 cut(s)	29, 194, 347, 377, 849
TatI	WGTACW	3 cut(s)	304, 309, 786
TauI	GCSGC	2 cut(s)	429, 600
TfiI	GAWTC	3 cut(s)	229, 397, 772
Tru1I	TTAA	1 cut(s)	1079
Tru9I	TTAA	1 cut(s)	1079
TscAI	CASTG	3 cut(s)	586, 726, 1043
TseI	GCWGC	2 cut(s)	501, 520
TspDTI	ATGAA	9 cut(s)	110, 203, 251, 277, 605, 673, 677, 785, 1004
TspMI	CCCGGG	1 cut(s)	405
TspRI	CASTG	3 cut(s)	586, 726, 1043
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	872
XapI	RAATTY	1 cut(s)	849
XceI	RCATGY	3 cut(s)	122, 131, 793
XmaI	CCCGGG	1 cut(s)	405
XmaJI	CCTAGG	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	4 cut(s)	260, 726, 765, 1087
ZrmI	AGTACT	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.