Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0020385

Physical Location & Seq

Genomic Coordinates Reverse (-)

21269848 .. 21270368

Gene Structure 521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1099200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTCGTCTTTATTTTTGTGGTTTTGAGCAGGTTGTCGCGATTAATGGATTGTTCCCGGGGCCACTTATCAACGCCACAACGAATGATTTTGTTCACGTGAACATCTTTAATGACATGGATGAACCTCTACTCTTTACATGGAATGGCATACAACAAAGGTTAAACTCATGGCAAGATGGAGTTTCCGGAACAAACTGCCCAATTCAACCCGGTACAAACTGGACATGTGTGTTCCAGACCAAGGATCAGATAGGCAGTTTCTTCTACTTCCCTTCCATCAACTTTCACAAGGCTGCTGGAGGATTTGGACCTATTCATGTCATCAACCGCAATGTCATTGCCATCCCCTTCCCTAGACCAGAAGCCGCATTTGATCTCCTTATTGGCGATTGGTTTTATGACAGTTACCAGGTCTTTCACTTGACATTTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

147

Amino Acids

16.65

Weight (kDa)

5.03

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	10 - 111	3.4e-35	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020385)

Species	Orthologous Gene IDs
malus_domestica	MD01G1099200.v1.1
pyrus_communis	pycom07g16130
rosa_multiflora	Rmu_co8363691.1_g000001 Rmu_co8439569.1_g000001
rosa_samantha	Rh1AG303400 Rh1AG303700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	188
AciI	CCGC	2 cut(s)	331, 369
AclWI	GGATC	1 cut(s)	255
AcvI	CACGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	411
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	296
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	62, 311
AsuC2I	CCSGG	3 cut(s)	59, 60, 213
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	311
BbrPI	CACGTG	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	3 cut(s)	173, 287, 353
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	3 cut(s)	59, 60, 213
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	297, 369
BlsI	GCNGC	2 cut(s)	298, 370
Bme1390I	CCNGG	4 cut(s)	59, 60, 213, 413
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	62, 311
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	4 cut(s)	59, 60, 213, 413
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	3 cut(s)	59, 60, 213
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	3 cut(s)	58, 59, 243
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	339, 340
BseAI	TCCGGA	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	3 cut(s)	58, 59, 243
BseGI	GGATG	2 cut(s)	127, 345
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	339, 340
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	59, 189, 213
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	247, 376
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	2 cut(s)	331, 369
BspANI	GGCC	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	339, 340
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	58, 59, 243
BssMI	GATC	2 cut(s)	247, 376
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	127, 345
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	250, 379
BstMBI	GATC	2 cut(s)	247, 376
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	4 cut(s)	57, 58, 211, 411
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	127, 345
BtuMI	TCGCGA	1 cut(s)	41
BveI	ACCTGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	62, 311
Cfr9I	CCCGGG	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	6 cut(s)	118, 141, 171, 228, 320, 438
CviJI	RGCY	3 cut(s)	64, 296, 368
CviKI_1	RGCY	3 cut(s)	64, 296, 368
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	2 cut(s)	249, 378
DpnII	GATC	2 cut(s)	247, 376
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	311
Eco72I	CACGTG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	6 cut(s)	121, 144, 174, 231, 323, 441
FaiI	YATR	8 cut(s)	119, 142, 152, 172, 229, 321, 402, 439
FatI	CATG	6 cut(s)	117, 140, 170, 227, 319, 437
Fnu4HI	GCNGC	2 cut(s)	297, 369
FokI	GGATG	2 cut(s)	134, 332
Fsp4HI	GCNGC	2 cut(s)	297, 369
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	297, 369
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	3 cut(s)	59, 189, 213
Hin1II	CATG	6 cut(s)	121, 144, 174, 231, 323, 441
HpaII	CCGG	3 cut(s)	59, 189, 213
Hpy166II	GTNNAC	2 cut(s)	97, 103
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	40, 189, 238, 438
Hpy8I	GTNNAC	2 cut(s)	97, 103
HpyAV	CCTTC	2 cut(s)	285, 361
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	121, 144, 174, 231, 323, 441
Kpn2I	TCCGGA	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	247, 376
Lsp1109I	GCAGC	1 cut(s)	283
MabI	ACCWGGT	1 cut(s)	411
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	249, 378
MboI	GATC	2 cut(s)	247, 376
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	1 cut(s)	204
MnlI	CCTC	2 cut(s)	138, 296
MroI	TCCGGA	1 cut(s)	188
MseI	TTAA	3 cut(s)	45, 111, 164
MspI	CCGG	3 cut(s)	59, 189, 213
MspR9I	CCNGG	4 cut(s)	59, 60, 213, 413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	41
NciI	CCSGG	3 cut(s)	59, 60, 213
NdeII	GATC	2 cut(s)	247, 376
NlaIII	CATG	6 cut(s)	121, 144, 174, 231, 323, 441
NlaIV	GGNNCC	1 cut(s)	63
NruI	TCGCGA	1 cut(s)	41
NspI	RCATGY	1 cut(s)	231
PagI	TCATGA	1 cut(s)	437
PciI	ACATGT	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	298, 370
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	100
PscI	ACATGT	1 cut(s)	227
PshBI	ATTAAT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	62, 311
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	45, 111, 164
SatI	GCNGC	2 cut(s)	297, 369
Sau3AI	GATC	2 cut(s)	247, 376
Sau96I	GGNCC	2 cut(s)	62, 311
ScrFI	CCNGG	4 cut(s)	59, 60, 213, 413
SetI	ASST	6 cut(s)	36, 102, 130, 164, 316, 417
SexAI	ACCWGGT	1 cut(s)	411
SinI	GGWCC	1 cut(s)	311
SmaI	CCCGGG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	2 cut(s)	331, 369
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	57, 58, 211, 411
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	102
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	45, 111, 164
Tru9I	TTAA	3 cut(s)	45, 111, 164
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	138, 308, 426
TspMI	CCCGGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	45
XceI	RCATGY	1 cut(s)	231
XmaI	CCCGGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.