pycom07g16130

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020385
Physical Location & Seq
Reverse (-)
18566947 .. 18567341
395 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16130.2

Sequence Viewer

Length: 288 bp
ATGGCATGGCCAAGTGTTCCTGCAACTCTTCTCATATTCTTTGCCCTAGCAGTTTCTGCTGAGGATATATTTCTTGACTGGCACGTCACACTTGACACAAGCATCAAACCGGCATCTGTCGACCAACCGGTTATCGCCATCAACGGGCAGTTTCCAGGGCCACTAATCAATGGCACAACCAATGATATGTTTCATGTCAATGTGTTTAATGAAATGGATGAACCGCTGCTCATAACTTGGTATGGCCAAAAATCGTGTGTTTGTATGATCTGTAGTGGATTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

96

Amino Acids

10.43

Weight (kDa)

4.12

Isoelectric Point (pI)

23.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020385)

Species Orthologous Gene IDs
malus_domestica MD01G1099200.v1.1
pyrus_communis pycom07g16130
rosa_multiflora Rmu_co8363691.1_g000001 Rmu_co8439569.1_g000001
rosa_samantha Rh1AG303400 Rh1AG303700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 2 cut(s) 8, 244
AfiI CCNNNNNNNGG 1 cut(s) 144
AgeI ACCGGT 1 cut(s) 127
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 3 cut(s) 8, 158, 244
ApeKI GCWGC 1 cut(s) 226
AsiGI ACCGGT 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 158
BalI TGGCCA 2 cut(s) 10, 246
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 271
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 111, 122
Bpu10I CCTNAGC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 2 cut(s) 109, 127
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 3 cut(s) 10, 160, 246
BshTI ACCGGT 1 cut(s) 127
BsiSI CCGG 2 cut(s) 110, 128
BslI CCNNNNNNNGG 1 cut(s) 144
BsnI GGCC 3 cut(s) 10, 160, 246
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 1 cut(s) 224
BspANI GGCC 3 cut(s) 10, 160, 246
BspCNI CTCAG 1 cut(s) 52
BsrFI RCCGGY 2 cut(s) 109, 127
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 109, 127
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 10, 160, 246
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 109, 127
Cfr13I GGNCC 1 cut(s) 158
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 2 cut(s) 6, 194
CviJI RGCY 3 cut(s) 10, 160, 246
CviKI_1 RGCY 3 cut(s) 10, 160, 246
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 8, 244
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 9, 197
FaiI YATR 8 cut(s) 7, 35, 68, 188, 195, 233, 243, 266
FatI CATG 2 cut(s) 5, 193
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 3 cut(s) 10, 160, 246
HapII CCGG 2 cut(s) 110, 128
Hin1II CATG 2 cut(s) 9, 197
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HpaII CCGG 2 cut(s) 110, 128
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 9, 197
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 6 cut(s) 33, 64, 123, 141, 141, 168
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 2 cut(s) 111, 122
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 1 cut(s) 20
MlsI TGGCCA 2 cut(s) 10, 246
MluNI TGGCCA 2 cut(s) 10, 246
MnlI CCTC 1 cut(s) 55
Mox20I TGGCCA 2 cut(s) 10, 246
MscI TGGCCA 2 cut(s) 10, 246
MseI TTAA 2 cut(s) 207, 286
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 2 cut(s) 10, 246
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 2 cut(s) 110, 128
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 9, 197
NmuCI GTSAC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 198
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 207, 286
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 156
SetI ASST 1 cut(s) 87
SfaNI GCATC 2 cut(s) 111, 122
SfcI CTRYAG 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 198
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 154
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 120
Tru1I TTAA 2 cut(s) 207, 286
Tru9I TTAA 2 cut(s) 207, 286
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 182, 225, 234
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.