Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8439569.1

Orthogroup ID

OG0020385

Physical Location & Seq

Genomic Coordinates Forward (+)

146 .. 864

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8439569.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggcctacactggcctgatcaaatgcgcaatattggttttagctcttgttgctagagccaatgctattcatatttatcttgattgggatgtgacccttgacagcaccatcaagcctgtgtctatggatcaacctgtcatcaccataaatgggaagtttccagggcctcttatcaatgccacaaccaatgactttgttcatgtcaatgtctttaacaacatggatgagcctctactatttacatggaatggtatacagcaaaggctaaactcatggcaagatggagtttcaggaacaaattgtccgattctacctggtacaaactggacttatgtgttccaaaccaaggaccagattggcagcttcttctactttccatccatcaacttccataaggctgctggagggtttggagctattcgtgttattaaccgcaaagtcattgccgtccccttccctgcaccagaggcagaatttgatctcctcattggtgattggtcttatgacagctacaaggtctctttcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

5.45

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020385)

Species	Orthologous Gene IDs
malus_domestica	MD01G1099200.v1.1
pyrus_communis	pycom07g16130
rosa_multiflora	Rmu_co8363691.1_g000001 Rmu_co8439569.1_g000001
rosa_samantha	Rh1AG303400 Rh1AG303700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	253
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	473
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	150, 346
AjnI	CCWGG	2 cut(s)	160, 313
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	4 cut(s)	44, 363, 416, 510
AluI	AGCT	4 cut(s)	44, 363, 416, 510
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	3 cut(s)	3, 13, 164
ApeKI	GCWGC	2 cut(s)	360, 398
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	164, 349
AsuHPI	GGTGA	2 cut(s)	133, 503
AvaII	GGWCC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	372, 385
BccI	CCATC	4 cut(s)	116, 275, 385, 389
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	162, 315
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	361, 399
BlsI	GCNGC	2 cut(s)	362, 400
Bme1390I	CCNGG	2 cut(s)	162, 315
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	164, 349
BmrFI	CCNGG	2 cut(s)	162, 315
BpmI	CTGGAG	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	161, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 346
Bse1I	ACTGG	2 cut(s)	16, 329
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	162, 315
BseDI	CCNNGG	2 cut(s)	161, 345
BseGI	GGATG	3 cut(s)	94, 229, 377
BseLI	CCNNNNNNNGG	2 cut(s)	150, 346
BseMI	GCAATG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	16, 329
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	372, 385
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	5, 15, 166
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	150, 346
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	5, 15, 166
Bso31I	GGTCTC	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	18, 127, 478
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	3 cut(s)	5, 15, 166
BspPI	GGATC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	16, 329
BssECI	CCNNGG	2 cut(s)	161, 345
BssMI	GATC	3 cut(s)	18, 127, 478
BssNAI	GTATAC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	345
Bst1107I	GTATAC	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	162, 315
BstF5I	GGATG	3 cut(s)	94, 229, 377
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	3 cut(s)	21, 130, 481
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	18, 127, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 467
BstNI	CCWGG	2 cut(s)	162, 315
BstSCI	CCNGG	2 cut(s)	160, 313
BstV1I	GCAGC	2 cut(s)	372, 385
BstZ17I	GTATAC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	5, 15, 166
BtsCI	GGATG	3 cut(s)	94, 229, 377
BtsIMutI	CAGTG	1 cut(s)	9
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	164, 349
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	4 cut(s)	200, 220, 243, 273
CviQI	GTAC	1 cut(s)	318
DpnI	GATC	3 cut(s)	20, 129, 480
DpnII	GATC	3 cut(s)	18, 127, 478
Eco130I	CCWWGG	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	160, 313
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	4 cut(s)	203, 223, 246, 276
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	199, 219, 242, 272
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	361, 399
FokI	GGATG	3 cut(s)	101, 236, 364
Fsp4HI	GCNGC	2 cut(s)	361, 399
FspBI	CTAG	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	361, 399
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	5, 15, 166
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	203, 223, 246, 276
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	2 cut(s)	133, 503
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	80, 291
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	463
HpyCH4V	TGCA	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 467
Hsp92II	CATG	4 cut(s)	203, 223, 246, 276
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 127, 478
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	2 cut(s)	372, 385
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	3 cut(s)	20, 129, 480
MboI	GATC	3 cut(s)	18, 127, 478
MboII	GAAGA	1 cut(s)	358
MluCI	AATT	2 cut(s)	298, 473
MnlI	CCTC	5 cut(s)	177, 240, 398, 460, 494
MseI	TTAA	2 cut(s)	213, 429
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	162, 315
MvaI	CCWGG	2 cut(s)	162, 315
MwoI	GCNNNNNNNGC	2 cut(s)	50, 467
NdeII	GATC	3 cut(s)	18, 127, 478
NlaIII	CATG	4 cut(s)	203, 223, 246, 276
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	362, 400
Psp6I	CCWGG	2 cut(s)	160, 313
PspGI	CCWGG	2 cut(s)	160, 313
PspPI	GGNCC	2 cut(s)	164, 349
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	213, 429
SatI	GCNGC	2 cut(s)	361, 399
Sau3AI	GATC	3 cut(s)	18, 127, 478
Sau96I	GGNCC	2 cut(s)	164, 349
ScrFI	CCNGG	2 cut(s)	162, 315
SetI	ASST	7 cut(s)	46, 136, 316, 365, 418, 512, 519
SexAI	ACCWGGT	1 cut(s)	313
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	298, 473
SsiI	CCGC	1 cut(s)	433
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	160, 313
StyI	CCWWGG	1 cut(s)	345
TasI	AATT	2 cut(s)	298, 473
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	213, 429
Tru9I	TTAA	2 cut(s)	213, 429
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	360, 398
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	59, 188
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	253
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.