Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020385

Physical Location & Seq

Genomic Coordinates Forward (+)

53566447 .. 53569967

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG303400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCTACACTGGCCTGATCAAATGCGCAATATTGGTTTTAGCTCTTGTTGCTAGAGCCAATGCTATTCATATTTATCTTGATTGGGATGTGACCCTTGACAGCACCATCAAGCCTGTGTCTATGGATCAACCTGTCATCACCATAAATGGGAAGTTTCCAGGGCCTCTTATCAATGCCACAACCAATGACTTTGTTCATGTCAATGTCTTTAACAACATGGATGAGCCTCTACTATTTACATGCCGTACGTTCAGGCTGTCTTCCCTTGCGAATAGCCACCTGCCGTATAAAGATTCAACCTCAACATTCAAGACTGAAAGTAGAACAAATTTTGTAAAATCACTAGAGTGCATGATCACTCCCTTTGAGGGCAATCATATAGCTAGATCGACTTCATCATATTCATTCATTCATAGTCTTCAAGGGAATCCAAGGGTCTTCTTCCCAAAGATCCCATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

7.77

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	37 - 83	2.4e-10	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020385)

Species	Orthologous Gene IDs
malus_domestica	MD01G1099200.v1.1
pyrus_communis	pycom07g16130
rosa_multiflora	Rmu_co8363691.1_g000001 Rmu_co8439569.1_g000001
rosa_samantha	Rh1AG303400 Rh1AG303700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	291
Acc16I	TGCGCA	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	135, 448
AcsI	RAATTY	1 cut(s)	331
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	150, 371
AgsI	TTSAA	3 cut(s)	300, 313, 425
AjnI	CCWGG	1 cut(s)	160
AleI	CACNNNNGTG	1 cut(s)	349
AluBI	AGCT	2 cut(s)	44, 386
AluI	AGCT	2 cut(s)	44, 386
AlwI	GGATC	2 cut(s)	135, 448
AoxI	GGCC	3 cut(s)	3, 13, 164
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	133
BbsI	GAAGAC	3 cut(s)	255, 413, 433
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	231, 271
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	2 cut(s)	18, 357
BfaI	CTAG	3 cut(s)	54, 347, 387
BfuAI	ACCTGC	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	162
BpiI	GAAGAC	3 cut(s)	255, 413, 433
BsaJI	CCNNGG	2 cut(s)	161, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 371
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	161, 434
BseGI	GGATG	2 cut(s)	94, 229
BseLI	CCNNNNNNNGG	2 cut(s)	150, 371
BseNI	ACTGG	1 cut(s)	16
BshFI	GGCC	3 cut(s)	5, 15, 166
BsiWI	CGTACG	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	150, 371
BsnI	GGCC	3 cut(s)	5, 15, 166
Bsp143I	GATC	5 cut(s)	18, 127, 357, 389, 453
BspANI	GGCC	3 cut(s)	5, 15, 166
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	135, 448
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	161, 434
BssMI	GATC	5 cut(s)	18, 127, 357, 389, 453
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	94, 229
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	21, 130, 360, 392, 456
BstMBI	GATC	5 cut(s)	18, 127, 357, 389, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	160
BstV2I	GAAGAC	3 cut(s)	255, 413, 433
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	5, 15, 166
BtsCI	GGATG	2 cut(s)	94, 229
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	4 cut(s)	200, 220, 243, 355
CviQI	GTAC	1 cut(s)	249
DpnI	GATC	5 cut(s)	20, 129, 359, 391, 455
DpnII	GATC	5 cut(s)	18, 127, 357, 389, 453
Eco130I	CCWWGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	203, 223, 246, 358
FatI	CATG	4 cut(s)	199, 219, 242, 354
FbaI	TGATCA	2 cut(s)	18, 357
FokI	GGATG	2 cut(s)	101, 236
FspBI	CTAG	3 cut(s)	54, 347, 387
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	5, 15, 166
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	203, 223, 246, 358
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	296, 430
HphI	GGTGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	80, 313
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	203, 223, 246, 358
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	2 cut(s)	18, 357
Kzo9I	GATC	5 cut(s)	18, 127, 357, 389, 453
LpnPI	CCDG	7 cut(s)	29, 129, 147, 147, 174, 241, 296
MaeI	CTAG	3 cut(s)	54, 347, 387
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	5 cut(s)	20, 129, 359, 391, 455
MboI	GATC	5 cut(s)	18, 127, 357, 389, 453
MboII	GAAGA	4 cut(s)	255, 413, 433, 436
MflI	RGATCY	1 cut(s)	453
MluCI	AATT	1 cut(s)	331
MnlI	CCTC	4 cut(s)	177, 240, 313, 364
MseI	TTAA	2 cut(s)	213, 466
MslI	CAYNNNNRTG	2 cut(s)	204, 349
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	5 cut(s)	18, 127, 357, 389, 453
NlaIII	CATG	4 cut(s)	203, 223, 246, 358
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	28
NspI	RCATGY	1 cut(s)	246
OliI	CACNNNNGTG	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	296, 430
Pfl23II	CGTACG	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspLI	CGTACG	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	2 cut(s)	204, 349
SaqAI	TTAA	2 cut(s)	213, 466
Sau3AI	GATC	5 cut(s)	18, 127, 357, 389, 453
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	6 cut(s)	46, 136, 254, 285, 305, 388
SmiMI	CAYNNNNRTG	2 cut(s)	204, 349
Sse9I	AATT	1 cut(s)	331
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	3 cut(s)	54, 347, 387
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	392
TasI	AATT	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	296, 430
Tru1I	TTAA	2 cut(s)	213, 466
Tru9I	TTAA	2 cut(s)	213, 466
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	6 cut(s)	59, 188, 387, 396, 400, 404
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	3 cut(s)	54, 347, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.