Rh1AG303700

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020385
Physical Location & Seq
Forward (+)
53598800 .. 53604785
5986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG303700.1

Sequence Viewer

Length: 192 bp
ATGGCATTAAAGTCTGGAAGTGATCGCCGTTGTCCATGGCTGATTCTCCCTGCAACTCTTCTCATTGTCCTCCTTGCCTATGGAGCTCATGCTGAGGACATTTTTCTTCAATGGGACGTCGCCGTCGATACGAGTATCAGACCTGCATCCGTGGACCAACCGGCATTAGGTAATAAGCCCTGTCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

63

Amino Acids

6.86

Weight (kDa)

4.99

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020385)

Species Orthologous Gene IDs
malus_domestica MD01G1099200.v1.1
pyrus_communis pycom07g16130
rosa_multiflora Rmu_co8363691.1_g000001 Rmu_co8439569.1_g000001
rosa_samantha Rh1AG303400 Rh1AG303700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AatII GACGTC 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 154
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 93
BceAI ACGGC 2 cut(s) 12, 107
BfuAI ACCTGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 35, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 35, 150
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 35, 150
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 2 cut(s) 35, 150
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 35, 150
BtsCI GGATG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 2 cut(s) 36, 89
CviJI RGCY 3 cut(s) 40, 86, 178
CviKI_1 RGCY 3 cut(s) 40, 86, 178
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 39, 92
FaiI YATR 3 cut(s) 37, 81, 90
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 35, 88
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 88
HapII CCGG 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 39, 92
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 15, 185
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 2 cut(s) 122, 128
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 53, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 39, 92
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 63, 156, 174
LweI GCATC 1 cut(s) 155
MaeII ACGT 1 cut(s) 117
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 2 cut(s) 50, 98
MhlI GDGCHC 1 cut(s) 88
MnlI CCTC 2 cut(s) 80, 88
MseI TTAA 1 cut(s) 8
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 35
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 39, 92
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 88, 120, 145, 172
SfaNI GCATC 1 cut(s) 155
SgeI CNNG 9 cut(s) 27, 48, 62, 86, 101, 144, 155, 163, 173
SinI GGWCC 1 cut(s) 154
SstI GAGCTC 1 cut(s) 88
StyI CCWWGG 1 cut(s) 35
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 126
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 154
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.