Rmu_co8363691.1_g000001

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363691.1
OG0020385
Physical Location & Seq
Reverse (-)
1 .. 685
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363691.1_g000001.1.cds

Sequence Viewer

Length: 272 bp
atggcattaaagtctggaagtgatcgccgttgtccatggctgattctccctgcaactcttctcattgtcctccttgcctatggagctcatgctgaggacatttttcttcaatgggacgtcgccgtcgatacgagtatcagacctgcatccgtggaccaaccggttattacaatcaacgggaagtttccagggccgcttatcaatgccacaaccaatgatattgttcatgttaatgtgtttaataatatggatgaagagctgctcataacatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

90

Amino Acids

9.88

Weight (kDa)

4.56

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020385)

Species Orthologous Gene IDs
malus_domestica MD01G1099200.v1.1
pyrus_communis pycom07g16130
rosa_multiflora Rmu_co8363691.1_g000001 Rmu_co8439569.1_g000001
rosa_samantha Rh1AG303400 Rh1AG303700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AatII GACGTC 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 151
AciI CCGC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 117
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 86, 259
AluI AGCT 2 cut(s) 86, 259
Alw21I GWGCWC 1 cut(s) 88
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 259
AsiGI ACCGGT 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 154, 191
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 246
BceAI ACGGC 2 cut(s) 12, 107
BciT130I CCWGG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 2 cut(s) 194, 260
BlsI GCNGC 2 cut(s) 195, 261
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 154, 191
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 35, 150, 188
BsaWI WCCGGW 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 160
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 35, 150, 188
BseGI GGATG 2 cut(s) 146, 256
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 193
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 35, 150, 188
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 63, 249
BstACI GRCGYC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 2 cut(s) 35, 150
BstF5I GGATG 2 cut(s) 146, 256
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 2 cut(s) 35, 150
BtsCI GGATG 2 cut(s) 146, 256
BveI ACCTGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 154, 191
CspAI ACCGGT 1 cut(s) 160
CviAII CATG 4 cut(s) 36, 89, 227, 270
CviJI RGCY 4 cut(s) 40, 86, 193, 259
CviKI_1 RGCY 4 cut(s) 40, 86, 193, 259
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 63, 249
EarI CTCTTC 2 cut(s) 63, 249
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 3 cut(s) 39, 92, 230
FaiI YATR 7 cut(s) 37, 81, 90, 228, 248, 266, 271
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 35, 88, 226
Fnu4HI GCNGC 2 cut(s) 194, 260
FokI GGATG 2 cut(s) 133, 263
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 194, 260
GluI GCNGC 2 cut(s) 194, 260
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 39, 92, 230
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 2 cut(s) 122, 128
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 53, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 39, 92, 230
Kzo9I GATC 1 cut(s) 22
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 5 cut(s) 63, 156, 174, 174, 201
Lsp1109I GCAGC 1 cut(s) 246
LweI GCATC 1 cut(s) 155
MaeII ACGT 1 cut(s) 117
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 50, 98, 266
MhlI GDGCHC 1 cut(s) 88
MnlI CCTC 2 cut(s) 80, 88
MseI TTAA 3 cut(s) 8, 231, 240
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 35
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 39, 92, 230
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 2 cut(s) 195, 261
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 2 cut(s) 154, 191
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 8, 231, 240
SatI GCNGC 2 cut(s) 194, 260
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 154, 191
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 88, 120, 145, 261
SfaNI GCATC 1 cut(s) 155
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 231
SsiI CCGC 1 cut(s) 194
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 35
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 126
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 8, 231, 240
Tru9I TTAA 3 cut(s) 8, 231, 240
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 215, 267
TspGWI ACGGA 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 154
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.