Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0020381

Physical Location & Seq

Genomic Coordinates Forward (+)

29353102 .. 29353998

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1195100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGTTTTTCGCCACCCCACCTGTTCATGGTTCATTGGCGAATCAGATTGTGCACCCCGCGGATTTGTGCTTTAAATTGCCGGAAAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGGGTTCATGCTTGTCGGCGAGCCAATGTTGGCCCCGAAACAACTGTTCTGATCATCGGAGCAGGGCCTATTGGTCTGGTTTCAGTTTTGGCCGCTCGTGCTTTTGGGGCACCAAGAATTGTCATTGTCGATATGGATGACAAGCGTTTAGCCATGGCAAAGTCTCTCGGCGCTGATGGCACCGTCAAAGTTTCAACGAAAATGGAGGATTTAGATGGCGAAGTTGCCAAGATTAAAGAAGCCATGGAATCCGAGGTGGATGTGACCTTTGATTGTGTGGGTTTCAATAAAACCATGTCCACAGGTCTCAACGCCACTCGTCCCGGCGGCAAAGTCTGCCTTGTCGGAATGGGACACGGCATGATGACAGTGCCTCTCACTCCTGCTGCTGCTAGAGAGGTTGATGTTGTTGGGGTTTTCCGATACAAGAACACATGGCCGCTTTGCCTCGAATTTTTGAGAAGTGGGAAGATCGATGTGAAGCCGCTTATTACACACCGGTATGGATTTACAGAGAAGGAGGTGGAAGAAGCCTTTGCAACAAGTGCTCGTGGGGGCAACGCCATCAAAGTCATGTTTAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

240

Amino Acids

25.54

Weight (kDa)

6.53

Isoelectric Point (pI)

23.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_dehyd_C	PF16912	36 - 165	9.8e-10	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	67 - 197	2.7e-29	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	100 - 230	1.2e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020381)

Species	Orthologous Gene IDs
malus_domestica	MD00G1006200.v1.1 MD01G1195100.v1.1
pyrus_communis	pycom01g20520 pycom01g20570 pycom01g20590 pycom07g24120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	241, 311
AccBSI	CCGCTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	60, 62, 225, 459, 572, 617
AcoI	YGGCCR	2 cut(s)	222, 569
AcsI	RAATTY	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgeI	ACCGGT	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	327, 418
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	2 cut(s)	57, 682
Alw26I	GTCTC	2 cut(s)	300, 443
Alw44I	GTGCAC	1 cut(s)	53
AoxI	GGCC	4 cut(s)	163, 197, 222, 569
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	518, 521
ApoI	RAATTY	1 cut(s)	584
AsiGI	ACCGGT	1 cut(s)	630
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	164, 197
AsuC2I	CCSGG	1 cut(s)	456
BaeGI	GKGCMC	2 cut(s)	57, 244
BanI	GGYRCC	2 cut(s)	241, 311
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	2 cut(s)	228, 681
Bbv12I	GWGCWC	2 cut(s)	57, 682
BbvI	GCAGC	2 cut(s)	505, 508
BccI	CCATC	3 cut(s)	302, 341, 704
BceAI	ACGGC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	300, 443
BfaI	CTAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	6 cut(s)	225, 460, 519, 522, 572, 617
BlsI	GCNGC	6 cut(s)	226, 461, 520, 523, 573, 618
Bme1390I	CCNGG	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	164, 197
BmiI	GGNNCC	3 cut(s)	166, 243, 313
BmrFI	CCNGG	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	60, 285, 375, 384
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	4 cut(s)	60, 285, 375, 384
BseGI	GGATG	2 cut(s)	274, 397
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	117
BseSI	GKGCMC	2 cut(s)	57, 244
BseXI	GCAGC	2 cut(s)	505, 508
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	165, 199, 224, 571
BshNI	GGYRCC	2 cut(s)	241, 311
BshTI	ACCGGT	1 cut(s)	630
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	57, 682
BsiSI	CCGG	3 cut(s)	83, 456, 631
BslFI	GGGAC	2 cut(s)	438, 498
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	300, 443
BsmFI	GGGAC	2 cut(s)	438, 498
BsnI	GGCC	4 cut(s)	165, 199, 224, 571
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	4 cut(s)	57, 123, 244, 682
Bsp143I	GATC	2 cut(s)	183, 603
Bsp19I	CCATGG	2 cut(s)	285, 375
BspACI	CCGC	6 cut(s)	60, 62, 225, 459, 572, 617
BspANI	GGCC	4 cut(s)	165, 199, 224, 571
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	166, 243, 313
BspT107I	GGYRCC	2 cut(s)	241, 311
BspTNI	GGTCTC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	630
BssAI	RCCGGY	1 cut(s)	630
BssECI	CCNNGG	4 cut(s)	60, 285, 375, 384
BssMI	GATC	2 cut(s)	183, 603
BssSI	CACGAG	2 cut(s)	228, 681
BssT1I	CCWWGG	2 cut(s)	285, 375
Bst2BI	CACGAG	2 cut(s)	228, 681
Bst4CI	ACNGT	3 cut(s)	178, 316, 502
BstAPI	GCANNNNNTGC	2 cut(s)	468, 677
BstC8I	GCNNGC	1 cut(s)	153
BstDSI	CCRYGG	3 cut(s)	60, 285, 375
BstF5I	GGATG	2 cut(s)	274, 397
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	186, 606
BstMAI	GTCTC	2 cut(s)	300, 443
BstMBI	GATC	2 cut(s)	183, 603
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 309, 468, 677
BstSCI	CCNGG	1 cut(s)	454
BstSLI	GKGCMC	2 cut(s)	57, 244
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	505, 508
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	4 cut(s)	165, 199, 224, 571
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	3 cut(s)	60, 285, 375
BtsCI	GGATG	2 cut(s)	274, 397
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	164, 197
Cfr42I	CCGCGG	1 cut(s)	63
ClaI	ATCGAT	1 cut(s)	606
CspAI	ACCGGT	1 cut(s)	630
CviAII	CATG	8 cut(s)	29, 140, 286, 376, 427, 493, 567, 706
DpnI	GATC	2 cut(s)	185, 605
DpnII	GATC	2 cut(s)	183, 603
DraI	TTTAAA	1 cut(s)	76
EaeI	YGGCCR	2 cut(s)	222, 569
Eco130I	CCWWGG	2 cut(s)	285, 375
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	285, 375
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	285, 375
FaeI	CATG	8 cut(s)	32, 143, 289, 379, 430, 496, 570, 709
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	438, 498
FatI	CATG	8 cut(s)	28, 139, 285, 375, 426, 492, 566, 705
FauI	CCCGC	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	225, 460, 519, 522, 572, 617
FokI	GGATG	2 cut(s)	281, 404
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	6 cut(s)	225, 460, 519, 522, 572, 617
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	6 cut(s)	225, 460, 519, 522, 572, 617
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	165, 199, 224, 571
HapII	CCGG	3 cut(s)	83, 456, 631
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	8 cut(s)	32, 143, 289, 379, 430, 496, 570, 709
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HinfI	GANTC	2 cut(s)	43, 380
HpaII	CCGG	3 cut(s)	83, 456, 631
Hpy166II	GTNNAC	2 cut(s)	55, 432
Hpy188I	TCNGA	6 cut(s)	48, 183, 191, 385, 479, 554
Hpy8I	GTNNAC	2 cut(s)	55, 432
HpyAV	CCTTC	2 cut(s)	98, 643
HpyCH4III	ACNGT	3 cut(s)	178, 316, 502
HpyCH4V	TGCA	2 cut(s)	55, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 309, 468, 677
Hsp92II	CATG	8 cut(s)	32, 143, 289, 379, 430, 496, 570, 709
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	183, 603
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	8 cut(s)	36, 96, 180, 194, 420, 469, 528, 644
Lsp1109I	GCAGC	2 cut(s)	505, 508
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	185, 605
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	2 cut(s)	183, 603
MboII	GAAGA	2 cut(s)	613, 671
MhlI	GDGCHC	4 cut(s)	57, 123, 244, 682
MluCI	AATT	4 cut(s)	77, 249, 584, 712
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	94, 331, 379, 516, 523, 590, 646
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	75, 366, 711
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	83, 456, 631
MspR9I	CCNGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 309, 468, 677
NciI	CCSGG	1 cut(s)	456
NcoI	CCATGG	2 cut(s)	285, 375
NdeII	GATC	2 cut(s)	183, 603
NlaIII	CATG	8 cut(s)	32, 143, 289, 379, 430, 496, 570, 709
NlaIV	GGNNCC	3 cut(s)	166, 243, 313
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	43, 380
PinAI	ACCGGT	1 cut(s)	630
PkrI	GCNGC	6 cut(s)	226, 461, 520, 523, 573, 618
PspN4I	GGNNCC	3 cut(s)	166, 243, 313
PspPI	GGNCC	2 cut(s)	164, 197
RseI	CAYNNNNRTG	1 cut(s)	633
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	75, 366, 711
SatI	GCNGC	6 cut(s)	225, 460, 519, 522, 572, 617
Sau3AI	GATC	2 cut(s)	183, 603
Sau96I	GGNCC	2 cut(s)	164, 197
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	4 cut(s)	57, 123, 244, 682
SetI	ASST	7 cut(s)	25, 98, 390, 401, 439, 534, 657
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	77, 249, 584, 712
SsiI	CCGC	6 cut(s)	60, 62, 225, 459, 572, 617
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	2 cut(s)	285, 375
TaaI	ACNGT	3 cut(s)	178, 316, 502
TaqI	TCGA	3 cut(s)	261, 582, 606
TasI	AATT	4 cut(s)	77, 249, 584, 712
TauI	GCSGC	4 cut(s)	227, 462, 574, 619
TfiI	GAWTC	2 cut(s)	43, 380
Tru1I	TTAA	3 cut(s)	75, 366, 711
Tru9I	TTAA	3 cut(s)	75, 366, 711
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	518, 521
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	4 cut(s)	17, 17, 24, 128
TspRI	CASTG	1 cut(s)	507
VneI	GTGCAC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.