MD02G1066600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017212
Physical Location & Seq
Reverse (-)
5436323 .. 5438033
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1066600.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGCGACTCAACCCAGGAGGAGGAAAGCCGATGAACCAGCGTCTTTCAGTGGGATTGACGTTGCACCGGTCGAGAAGAAGAGCAGAGTTGGAACTTCAGTAACAACTGTTCCGGAAGCTCAAACTATAAGCGCTGGAGTACATTTGAGGATTCAGCAGGCCAAAAATGCAGCAGTAGCGCAAGCGCAAAAAGATGGTGCGACCGGAAGCTTTAGAATCTTTGATTCGCCCTTCGGGAATTATCTTGTTCCTGTAATTCCCACTGCCAAGGAACTAGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

9.97

Weight (kDa)

9.6

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOSSC PF15925 20 - 87 6.6e-06 SOSS complex subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017212)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06280
malus_domestica MD02G1066600.v1.1 MD15G1197100.v1.1
prunus_persica Prupe.7G218700_v2.0.a1
pyrus_communis pycom02g05270
rosa_chinensis RchiOBHm_Chr2g0091981
rosa_roxburghii Rroxscaffold_2G00149560
rosa_rugosa Rorug02G0022100
rosa_samantha Rh2AG067700 Rh2BG067000 Rh2CG068300 Rh2DG066800
rosa_wichuraiana Rw2G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 141
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 21
AgeI ACCGGT 1 cut(s) 67
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 3 cut(s) 119, 210, 278
AluI AGCT 3 cut(s) 119, 210, 278
Aor13HI TCCGGA 1 cut(s) 112
Aor51HI AGCGCT 1 cut(s) 133
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 170
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 3 cut(s) 134, 181, 187
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 16
BfaI CTAG 2 cut(s) 275, 283
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 14, 267
BsaWI WCCGGW 3 cut(s) 67, 112, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse118I RCCGGY 1 cut(s) 67
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 14, 267
BseLI CCNNNNNNNGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 182
Bsh1285I CGRYCG 2 cut(s) 72, 204
BshFI GGCC 1 cut(s) 161
BshTI ACCGGT 1 cut(s) 67
BsiEI CGRYCG 2 cut(s) 72, 204
BsiSI CCGG 3 cut(s) 68, 113, 204
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 112
BspANI GGCC 1 cut(s) 161
BspEI TCCGGA 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 14, 267
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 159, 183
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 3 cut(s) 134, 181, 187
BstMCI CGRYCG 2 cut(s) 72, 204
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 55, 261
Cac8I GCNNGC 2 cut(s) 159, 183
CfoI GCGC 3 cut(s) 134, 181, 187
Cfr10I RCCGGY 1 cut(s) 67
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 67
CviJI RGCY 5 cut(s) 29, 119, 161, 210, 278
CviKI_1 RGCY 5 cut(s) 29, 119, 161, 210, 278
CviQI GTAC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 267
Eco47III AGCGCT 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaiI YATR 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 2 cut(s) 275, 283
GlaI GCGC 3 cut(s) 133, 180, 186
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 68, 113, 204
HgaI GACGC 1 cut(s) 30
HhaI GCGC 3 cut(s) 134, 181, 187
Hin6I GCGC 3 cut(s) 132, 179, 185
HinP1I GCGC 3 cut(s) 132, 179, 185
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 4 cut(s) 7, 151, 216, 224
HpaII CCGG 3 cut(s) 68, 113, 204
Hpy188III TCNNGA 3 cut(s) 73, 113, 235
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 65, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 3 cut(s) 132, 179, 185
Kpn2I TCCGGA 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 74
LpnPI CCDG 8 cut(s) 28, 51, 81, 120, 126, 143, 217, 264
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 2 cut(s) 275, 283
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 2 cut(s) 88, 91
MluCI AATT 2 cut(s) 238, 255
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 12, 15, 141
MroI TCCGGA 1 cut(s) 112
MspI CCGG 3 cut(s) 68, 113, 204
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
PciSI GCTCTTC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 151, 216, 224
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 16
SetI ASST 4 cut(s) 63, 121, 212, 280
Sse9I AATT 2 cut(s) 238, 255
SspMI CTAG 2 cut(s) 275, 283
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 238, 255
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 3 cut(s) 151, 216, 224
TscAI CASTG 2 cut(s) 55, 268
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 2 cut(s) 55, 268
XspI CTAG 2 cut(s) 275, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.