Prupe.7G218700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017212
Physical Location & Seq
Forward (+)
19673983 .. 19675427
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G218700.1

Sequence Viewer

Length: 294 bp
ATGGCGCCTGCTCCACCCAGAAGGAGAAAAGCTGCTGAACCACTGTCTGGCAGTGGGGTTAATGTTGCTGCACCAGTTGAGAAGAAGATCAGAGTTGGAGCAACCTCAGTAACAACAGTTCAAGAGGCTCAAACTATAAGTTCTGGAGTCAATTTGAGGGTTCAACAGGCCAAAAATGCTGCAGTGGCACAAGCACAACAAGATGGTGCCACTGGAAACTTTAGGATCTTTGATTCACCCTTTGGGAATTATCTTGTTCCAGTTGTTCCAACTTCCAAGGAACTGTCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.12

Weight (kDa)

9.98

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017212)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06280
malus_domestica MD02G1066600.v1.1 MD15G1197100.v1.1
prunus_persica Prupe.7G218700_v2.0.a1
pyrus_communis pycom02g05270
rosa_chinensis RchiOBHm_Chr2g0091981
rosa_roxburghii Rroxscaffold_2G00149560
rosa_rugosa Rorug02G0022100
rosa_samantha Rh2AG067700 Rh2BG067000 Rh2CG068300 Rh2DG066800
rosa_wichuraiana Rw2G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 206
AccB7I CCANNNNNTGG 1 cut(s) 47
AclWI GGATC 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 122, 164
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 32, 68, 179
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 228
BanI GGYRCC 2 cut(s) 4, 206
BbvI GCAGC 3 cut(s) 19, 55, 166
BccI CCATC 1 cut(s) 197
BfaI CTAG 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 33, 69, 180
BlsI GCNGC 3 cut(s) 34, 70, 181
BmiI GGNNCC 2 cut(s) 6, 208
BpmI CTGGAG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 74, 217, 260
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 3 cut(s) 74, 217, 260
BseXI GCAGC 3 cut(s) 19, 55, 166
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 2 cut(s) 4, 206
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 87, 225
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 6, 208
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 2 cut(s) 4, 206
BsrI ACTGG 3 cut(s) 74, 217, 260
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 87, 225
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 45, 118, 285
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 90, 228
BstMBI GATC 2 cut(s) 87, 225
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 19, 55, 166
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 170
BtsI GCAGTG 2 cut(s) 58, 189
BtsIMutI CAGTG 4 cut(s) 41, 58, 189, 210
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 7
CviJI RGCY 3 cut(s) 32, 128, 170
CviKI_1 RGCY 3 cut(s) 32, 128, 170
DdeI CTNAG 1 cut(s) 106
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 89, 227
DpnII GATC 2 cut(s) 87, 225
Eco130I CCWWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 276
FaiI YATR 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 33, 69, 180
Fsp4HI GCNGC 3 cut(s) 33, 69, 180
FspBI CTAG 1 cut(s) 292
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 33, 69, 180
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 170
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 147, 233
HphI GGTGA 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 92, 289
Hpy188III TCNNGA 2 cut(s) 122, 144
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 45, 118, 285
HpyCH4V TGCA 2 cut(s) 71, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
HpyF3I CTNAG 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 87, 225
LmnI GCTCC 2 cut(s) 16, 98
LpnPI CCDG 8 cut(s) 21, 31, 33, 87, 129, 152, 198, 273
Lsp1109I GCAGC 3 cut(s) 19, 55, 166
MaeI CTAG 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 89, 227
MboI GATC 2 cut(s) 87, 225
MboII GAAGA 2 cut(s) 94, 97
MflI RGATCY 1 cut(s) 225
MluCI AATT 2 cut(s) 151, 247
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 76, 293
MnlI CCTC 3 cut(s) 115, 118, 150
MseI TTAA 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 87, 225
NlaIV GGNNCC 2 cut(s) 6, 208
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 3 cut(s) 34, 70, 181
PleI GAGTC 1 cut(s) 155
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 6, 208
PsrI GAACNNNNNNTAC 2 cut(s) 102, 134
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 225
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 3 cut(s) 33, 69, 180
Sau3AI GATC 2 cut(s) 87, 225
SchI GAGTC 1 cut(s) 156
SetI ASST 2 cut(s) 34, 107
SfcI CTRYAG 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 6
Sse9I AATT 2 cut(s) 151, 247
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 45, 118, 285
TasI AATT 2 cut(s) 151, 247
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 4 cut(s) 48, 58, 189, 217
TseI GCWGC 3 cut(s) 32, 68, 179
TspRI CASTG 4 cut(s) 48, 58, 189, 217
Van91I CCANNNNNTGG 1 cut(s) 47
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.