Rorug02G0022100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017212
Physical Location & Seq
Reverse (-)
1785923 .. 1786963
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0022100.1

Sequence Viewer

Length: 1041 bp
ATGCCGAAGCGAAAGGGAGAGTCGTCTGACTCGTCCATGTCTATGGGTTCTTCACTTCCGATCTCGGAAGCGATTAGGGTTCGGGCCTCGAGCGAGACCGGCCGTGGCAGCAAGACCAGAGATTCCGATCTTGTTCGAGAAAATGCAAGAAACCATCTTTTGGCGACGGGCTGGACTTTCTTGCGGGCAAGAAAGTCCAACGATTACATGTACCACTCACCGGCCGGAAAAGTCTTCTACTCACTCCGTACAGCCTTCAAGAGCGTAGTTTCTCAAAGCCTCGAAGTGGACTCAACGACGTCGTCGCCTTTGTTCTGCATGAAGACTTGTTCATCAAGAAAGAGAAGGAAGATAAAGATGAGAACAATGGAGGACGTAATGAACGACGAAAGGTTTTTTCTCTCCGGCATTGACAGGCTTTTGGGAAGGCCAAGTCCGGTGAACGGCAGGAGCGATCTTTCTTGGACTTTACTAAAGTCCGACTTGAAAGAGAACAAGATTGACAACCTCAAGCTCAACCAAGCCCTAAAAGTCATGCACCAGTGTTTTAAGCCTTCTAAGGACCCTTTGACCCACAAAGATGTAGCGGAGGACATCATTTTCAATAGGGAAAGAGAGTTTTACACAGTCGTTTTGGAGAAGCAAGACAAGGTGGTCACCGCCGCTAATGTGAGGATTCATGGTGTGGTGGCAGAACTGCCACTTATGGCAACTAAATTTAAGTACCGGAGACAAGGGATGTGCAAGATTTTGATGAATGAGATTGAGAACTGGCTTAGGGACTCCGGGATCGAGAGGCTTGTCTTGCCTTCGGCGCAAAGCGCGCTGAAGACATGGACTAGTAGTTCGATTGGGTTTTCGACTATGACTGAGGATGACAAGGCAGATCTTCTCATTGCTTATGATTGCTTGGATTTCCAGGACACTGTTATGTGTGAGAAACAACTGATCTTGAAGAAAAATGAGAACGGTGATGGTGAATCTAGTGATGAAGGCTCTACAATATCACATGAAGACTACATTTATGGGGACGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

39.26

Weight (kDa)

8.39

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 36 - 92 6.2e-15 Domain of unknown function (DUF7028)
IDM1_C PF23209 183 - 315 9.7e-38 Increased DNA methylation 1, C-terminal domain
Acetyltransf_1 PF00583 191 - 275 9.1e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017212)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06280
malus_domestica MD02G1066600.v1.1 MD15G1197100.v1.1
prunus_persica Prupe.7G218700_v2.0.a1
pyrus_communis pycom02g05270
rosa_chinensis RchiOBHm_Chr2g0091981
rosa_roxburghii Rroxscaffold_2G00149560
rosa_rugosa Rorug02G0022100
rosa_samantha Rh2AG067700 Rh2BG067000 Rh2CG068300 Rh2DG066800
rosa_wichuraiana Rw2G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AatII GACGTC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 160
AccII CGCG 1 cut(s) 824
AciI CCGC 4 cut(s) 184, 587, 660, 663
AclWI GGATC 1 cut(s) 797
AcoI YGGCCR 2 cut(s) 100, 222
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 848
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 3 cut(s) 212, 250, 725
AfiI CCNNNNNNNGG 4 cut(s) 160, 220, 286, 443
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 4 cut(s) 259, 487, 604, 955
AhlI ACTAGT 1 cut(s) 839
AjnI CCWGG 1 cut(s) 918
AloI GAACNNNNNNTCC 2 cut(s) 829, 861
AluBI AGCT 1 cut(s) 514
AluI AGCT 1 cut(s) 514
Alw26I GTCTC 2 cut(s) 89, 724
AlwI GGATC 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 4 cut(s) 84, 100, 222, 428
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 716
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
AspLEI GCGC 3 cut(s) 817, 824, 826
AspS9I GGNCC 2 cut(s) 84, 562
AsuC2I CCSGG 1 cut(s) 787
AsuHPI GGTGA 5 cut(s) 210, 451, 649, 983, 989
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 1 cut(s) 562
BbsI GAAGAC 4 cut(s) 226, 329, 836, 1020
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 162, 968
BceAI ACGGC 2 cut(s) 87, 460
BciT130I CCWGG 1 cut(s) 920
BcnI CCSGG 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 89, 724
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 2 cut(s) 840, 984
BglII AGATCT 1 cut(s) 886
BisI GCNGC 2 cut(s) 109, 663
BlsI GCNGC 2 cut(s) 110, 664
Bme1390I CCNGG 2 cut(s) 787, 920
Bme18I GGWCC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 84, 562
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 787, 920
BpiI GAAGAC 4 cut(s) 226, 329, 836, 1020
Bpu10I CCTNAGC 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 787
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 2 cut(s) 436, 726
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 220, 286, 443
Bse118I RCCGGY 2 cut(s) 98, 220
Bse1I ACTGG 2 cut(s) 541, 776
Bse3DI GCAATG 1 cut(s) 894
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 920
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 744, 880
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 4 cut(s) 160, 220, 286, 443
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 2 cut(s) 541, 776
BsePI GCGCGC 1 cut(s) 822
BseX3I CGGCCG 2 cut(s) 100, 222
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 824
Bsh1285I CGRYCG 2 cut(s) 103, 225
BshFI GGCC 4 cut(s) 86, 102, 224, 430
BsiEI CGRYCG 2 cut(s) 103, 225
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 7 cut(s) 99, 221, 225, 405, 437, 727, 786
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 4 cut(s) 160, 220, 286, 443
BsmAI GTCTC 2 cut(s) 89, 724
BsmFI GGGAC 1 cut(s) 794
BsnI GGCC 4 cut(s) 86, 102, 224, 430
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 88
Bsp143I GATC 6 cut(s) 60, 127, 454, 789, 886, 948
BspACI CCGC 4 cut(s) 184, 587, 660, 663
BspANI GGCC 4 cut(s) 86, 102, 224, 430
BspCNI CTCAG 1 cut(s) 862
BspFNI CGCG 1 cut(s) 824
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 894
BsrFI RCCGGY 2 cut(s) 98, 220
BsrI ACTGG 2 cut(s) 541, 776
BssAI RCCGGY 2 cut(s) 98, 220
BssECI CCNNGG 1 cut(s) 103
BssHII GCGCGC 1 cut(s) 822
BssMI GATC 6 cut(s) 60, 127, 454, 789, 886, 948
BssNI GRCGYC 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 920
Bst4CI ACNGT 3 cut(s) 628, 928, 971
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 186, 824
BstDEI CTNAG 3 cut(s) 558, 776, 870
BstDSI CCRYGG 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 2 cut(s) 744, 880
BstFNI CGCG 1 cut(s) 824
BstHHI GCGC 3 cut(s) 817, 824, 826
BstKTI GATC 6 cut(s) 63, 130, 457, 792, 889, 951
BstMAI GTCTC 2 cut(s) 89, 724
BstMBI GATC 6 cut(s) 60, 127, 454, 789, 886, 948
BstMCI CGRYCG 2 cut(s) 103, 225
BstMWI GCNNNNNNNGC 6 cut(s) 99, 108, 805, 814, 821, 823
BstNI CCWGG 1 cut(s) 920
BstNSI RCATGY 1 cut(s) 211
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 2 cut(s) 785, 918
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 4 cut(s) 226, 329, 836, 1020
BstX2I RGATCY 1 cut(s) 886
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 886
BstZI CGGCCG 2 cut(s) 100, 222
BsuRI GGCC 4 cut(s) 86, 102, 224, 430
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 744, 880
BtsIMutI CAGTG 2 cut(s) 548, 924
Cac8I GCNNGC 2 cut(s) 186, 824
CfoI GCGC 3 cut(s) 817, 824, 826
Cfr10I RCCGGY 2 cut(s) 98, 220
Cfr13I GGNCC 2 cut(s) 84, 562
Csp6I GTAC 3 cut(s) 211, 249, 724
CviAII CATG 7 cut(s) 37, 208, 319, 535, 680, 834, 1010
CviQI GTAC 3 cut(s) 211, 249, 724
DdeI CTNAG 3 cut(s) 558, 776, 870
DpnI GATC 6 cut(s) 62, 129, 456, 791, 888, 950
DpnII GATC 6 cut(s) 60, 127, 454, 789, 886, 948
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 2 cut(s) 100, 222
EagI CGGCCG 2 cut(s) 100, 222
EclXI CGGCCG 2 cut(s) 100, 222
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 562
Eco52I CGGCCG 2 cut(s) 100, 222
Eco57I CTGAAG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 918
FaeI CATG 7 cut(s) 40, 211, 322, 538, 683, 837, 1013
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 794
FatI CATG 7 cut(s) 36, 207, 318, 534, 679, 833, 1009
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 109, 663
FokI GGATG 2 cut(s) 751, 887
Fsp4HI GCNGC 2 cut(s) 109, 663
FspBI CTAG 2 cut(s) 840, 984
GlaI GCGC 3 cut(s) 816, 823, 825
GluI GCNGC 2 cut(s) 109, 663
HaeIII GGCC 4 cut(s) 86, 102, 224, 430
HapII CCGG 7 cut(s) 99, 221, 225, 405, 437, 727, 786
HhaI GCGC 3 cut(s) 817, 824, 826
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 7 cut(s) 40, 211, 322, 538, 683, 837, 1013
Hin6I GCGC 3 cut(s) 815, 822, 824
HinP1I GCGC 3 cut(s) 815, 822, 824
HinfI GANTC 7 cut(s) 20, 29, 122, 290, 676, 782, 980
HpaII CCGG 7 cut(s) 99, 221, 225, 405, 437, 727, 786
HphI GGTGA 5 cut(s) 210, 451, 649, 983, 989
Hpy166II GTNNAC 2 cut(s) 289, 442
Hpy188I TCNGA 5 cut(s) 28, 60, 67, 127, 481
Hpy188III TCNNGA 5 cut(s) 137, 259, 336, 793, 952
Hpy8I GTNNAC 2 cut(s) 289, 442
Hpy99I CGWCG 5 cut(s) 169, 301, 304, 307, 389
HpyAV CCTTC 6 cut(s) 265, 339, 420, 564, 819, 986
HpyCH4III ACNGT 3 cut(s) 628, 928, 971
HpyCH4IV ACGT 2 cut(s) 299, 375
HpyCH4V TGCA 4 cut(s) 146, 318, 538, 744
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 108, 805, 814, 821, 823
HpyF3I CTNAG 3 cut(s) 558, 776, 870
HpySE526I ACGT 2 cut(s) 299, 375
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 7 cut(s) 40, 211, 322, 538, 683, 837, 1013
HspAI GCGC 3 cut(s) 815, 822, 824
Kzo9I GATC 6 cut(s) 60, 127, 454, 789, 886, 948
LmnI GCTCC 1 cut(s) 450
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 2 cut(s) 840, 984
MaeII ACGT 2 cut(s) 299, 375
MaeIII GTNAC 1 cut(s) 655
MalI GATC 6 cut(s) 62, 129, 456, 791, 888, 950
MboI GATC 6 cut(s) 60, 127, 454, 789, 886, 948
MboII GAAGA 8 cut(s) 42, 226, 334, 361, 841, 881, 967, 1025
MflI RGATCY 1 cut(s) 886
MluCI AATT 1 cut(s) 716
MlyI GAGTC 4 cut(s) 23, 29, 284, 776
MmeI TCCRAC 2 cut(s) 222, 504
MnlI CCTC 8 cut(s) 97, 290, 364, 518, 583, 666, 789, 865
MseI TTAA 2 cut(s) 549, 720
MslI CAYNNNNRTG 3 cut(s) 41, 579, 929
MspI CCGG 7 cut(s) 99, 221, 225, 405, 437, 727, 786
MspR9I CCNGG 2 cut(s) 787, 920
MvaI CCWGG 1 cut(s) 920
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 6 cut(s) 99, 108, 805, 814, 821, 823
NciI CCSGG 1 cut(s) 787
NdeII GATC 6 cut(s) 60, 127, 454, 789, 886, 948
NlaIII CATG 7 cut(s) 40, 211, 322, 538, 683, 837, 1013
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 655
NspI RCATGY 1 cut(s) 211
PaeR7I CTCGAG 1 cut(s) 88
PauI GCGCGC 1 cut(s) 822
PciI ACATGT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 381, 450
PfeI GAWTC 3 cut(s) 122, 676, 980
PflFI GACNNNGTC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 160
PfoI TCCNGGA 2 cut(s) 785, 918
PkrI GCNGC 2 cut(s) 110, 664
PleI GAGTC 4 cut(s) 23, 28, 284, 776
PpsI GAGTC 4 cut(s) 23, 28, 284, 776
PpuMI RGGWCCY 1 cut(s) 562
PscI ACATGT 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 918
PspEI GGTNACC 1 cut(s) 655
PspGI CCWGG 1 cut(s) 918
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 84, 562
PspPPI RGGWCCY 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 88
PsuI RGATCY 1 cut(s) 886
PsyI GACNNNGTC 1 cut(s) 301
PteI GCGCGC 1 cut(s) 822
RsaI GTAC 3 cut(s) 212, 250, 725
RsaNI GTAC 3 cut(s) 211, 249, 724
RseI CAYNNNNRTG 3 cut(s) 41, 579, 929
SaqAI TTAA 2 cut(s) 549, 720
SatI GCNGC 2 cut(s) 109, 663
Sau3AI GATC 6 cut(s) 60, 127, 454, 789, 886, 948
Sau96I GGNCC 2 cut(s) 84, 562
SchI GAGTC 4 cut(s) 23, 29, 284, 776
ScrFI CCNGG 2 cut(s) 787, 920
SetI ASST 6 cut(s) 302, 378, 395, 510, 516, 654
Sfr274I CTCGAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 562
SlaI CTCGAG 1 cut(s) 88
SmiMI CAYNNNNRTG 3 cut(s) 41, 579, 929
SmlI CTYRAG 2 cut(s) 88, 509
SmoI CTYRAG 2 cut(s) 88, 509
SpeI ACTAGT 1 cut(s) 839
Sse9I AATT 1 cut(s) 716
SsiI CCGC 4 cut(s) 184, 587, 660, 663
SspMI CTAG 2 cut(s) 840, 984
StyD4I CCNGG 2 cut(s) 785, 918
TaaI ACNGT 3 cut(s) 628, 928, 971
TaiI ACGT 2 cut(s) 302, 378
TaqI TCGA 6 cut(s) 89, 136, 282, 792, 848, 860
TasI AATT 1 cut(s) 716
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 3 cut(s) 122, 676, 980
Tru1I TTAA 2 cut(s) 549, 720
Tru9I TTAA 2 cut(s) 549, 720
TscAI CASTG 2 cut(s) 548, 931
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 7 cut(s) 321, 335, 395, 668, 770, 1005, 1026
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 548, 931
Tth111I GACNNNGTC 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 562
XapI RAATTY 1 cut(s) 716
XceI RCATGY 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 88
XspI CTAG 2 cut(s) 840, 984
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.