pycom02g05270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017212
Physical Location & Seq
Reverse (-)
3500502 .. 3501782
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05270.2

Sequence Viewer

Length: 288 bp
ATGGCGACTCAACCCAGGAGGAGGAAAGCCGATGAACCACCGTCTTTCAGTGGGGTTAACGTGCCTGCACCGGTTGAGAAGAAGAGCAGAGTTGAAACTTCAGTAACAACTGTTCCGGAAGCTCAAACTATAAGTGCTGGAGTACATTTGAGGATTCAGCAGGCCAAAAATGCAGCAGTAGCACAAGCGCAAAAAGATGGTGCGACCGGAAGCTTTAGAATCTTTGATTCGCCCTTCGGGAATTATCTTGTTCCTGTAATTCCCACTGCCAAGGAACTAGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.15

Weight (kDa)

9.6

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017212)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06280
malus_domestica MD02G1066600.v1.1 MD15G1197100.v1.1
prunus_persica Prupe.7G218700_v2.0.a1
pyrus_communis pycom02g05270
rosa_chinensis RchiOBHm_Chr2g0091981
rosa_roxburghii Rroxscaffold_2G00149560
rosa_rugosa Rorug02G0022100
rosa_samantha Rh2AG067700 Rh2BG067000 Rh2CG068300 Rh2DG066800
rosa_wichuraiana Rw2G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 21
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 3 cut(s) 122, 213, 281
AluI AGCT 3 cut(s) 122, 213, 281
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 173
AsiGI ACCGGT 1 cut(s) 70
AspLEI GCGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 16
BfaI CTAG 2 cut(s) 278, 286
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 14, 270
BsaWI WCCGGW 3 cut(s) 70, 115, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse118I RCCGGY 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 14, 270
BseLI CCNNNNNNNGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 3 cut(s) 71, 116, 207
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 115
BspANI GGCC 1 cut(s) 164
BspEI TCCGGA 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 14, 270
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 42, 112
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 66, 162
BstHHI GCGC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 55, 264
Cac8I GCNNGC 2 cut(s) 66, 162
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 70
Csp6I GTAC 1 cut(s) 143
CspAI ACCGGT 1 cut(s) 70
CviJI RGCY 5 cut(s) 29, 122, 164, 213, 281
CviKI_1 RGCY 5 cut(s) 29, 122, 164, 213, 281
CviQI GTAC 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaiI YATR 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 2 cut(s) 278, 286
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 71, 116, 207
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 4 cut(s) 7, 154, 219, 227
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 3 cut(s) 71, 116, 207
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 116, 238
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 42, 112
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 68, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 58
LguI GCTCTTC 1 cut(s) 77
LpnPI CCDG 8 cut(s) 28, 78, 84, 123, 129, 146, 220, 267
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 2 cut(s) 278, 286
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 103
MboII GAAGA 2 cut(s) 91, 94
MluCI AATT 2 cut(s) 241, 258
MnlI CCTC 3 cut(s) 12, 15, 144
MroI TCCGGA 1 cut(s) 115
MseI TTAA 1 cut(s) 57
MspI CCGG 3 cut(s) 71, 116, 207
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 3 cut(s) 154, 219, 227
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 16
SetI ASST 4 cut(s) 63, 124, 215, 283
Sse9I AATT 2 cut(s) 241, 258
SspMI CTAG 2 cut(s) 278, 286
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 42, 112
TaiI ACGT 1 cut(s) 63
TasI AATT 2 cut(s) 241, 258
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 3 cut(s) 154, 219, 227
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 55, 271
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 2 cut(s) 55, 271
XspI CTAG 2 cut(s) 278, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.