MD15G1197100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017212
Physical Location & Seq
Reverse (-)
15633292 .. 15634691
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1197100.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGCGGCCCAACCCAGGAGGAGGAAAGCTGACGAACCATCGTCTTTCAGTGGGATTAAGGTGCCTGCACCGGTCGAGAACAAGAGCAGAGTTGGAACGTCAGTAACAACAGTTCCAGAGTCTCAAAGTACAAGTGCCGGATTGAATTTGAGGATTGTGCAGGCCAAAAATGCGGCAGTTGCACAAGCGCAAAAAGATGGTGCGACCGGAAGCTATAGGATCTTTGATTCGCCCTTCAGGAATTATCTTGTTCGTGTAAAATCCCCACTGCCAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.03

Weight (kDa)

10.97

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017212)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06280
malus_domestica MD02G1066600.v1.1 MD15G1197100.v1.1
prunus_persica Prupe.7G218700_v2.0.a1
pyrus_communis pycom02g05270
rosa_chinensis RchiOBHm_Chr2g0091981
rosa_roxburghii Rroxscaffold_2G00149560
rosa_rugosa Rorug02G0022100
rosa_samantha Rh2AG067700 Rh2BG067000 Rh2CG068300 Rh2DG066800
rosa_wichuraiana Rw2G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 2 cut(s) 5, 173
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 15, 21
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 29, 213
AluI AGCT 2 cut(s) 29, 213
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 227
AoxI GGCC 2 cut(s) 6, 162
ApoI RAATTY 1 cut(s) 145
AsiGI ACCGGT 1 cut(s) 70
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 61
BccI CCATC 2 cut(s) 46, 191
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 2 cut(s) 6, 174
BlsI GCNGC 2 cut(s) 7, 175
Bme1390I CCNGG 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 14, 272
BsaWI WCCGGW 2 cut(s) 70, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 21
Bse118I RCCGGY 1 cut(s) 70
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 14, 272
BseLI CCNNNNNNNGG 2 cut(s) 15, 21
BseRI GAGGAG 1 cut(s) 34
BsgI GTGCAG 2 cut(s) 51, 179
Bsh1285I CGRYCG 2 cut(s) 75, 207
BshFI GGCC 2 cut(s) 8, 164
BshNI GGYRCC 1 cut(s) 61
BshTI ACCGGT 1 cut(s) 70
BsiEI CGRYCG 2 cut(s) 75, 207
BsiSI CCGG 3 cut(s) 71, 138, 207
BslI CCNNNNNNNGG 2 cut(s) 15, 21
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 2 cut(s) 8, 164
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 2 cut(s) 5, 173
BspANI GGCC 2 cut(s) 8, 164
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 14, 272
BssMI GATC 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 66, 162
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 219
BstMCI CGRYCG 2 cut(s) 75, 207
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 2 cut(s) 8, 164
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 55, 266
Cac8I GCNNGC 2 cut(s) 66, 162
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 129
CspAI ACCGGT 1 cut(s) 70
CviJI RGCY 4 cut(s) 8, 29, 164, 213
CviKI_1 RGCY 4 cut(s) 8, 29, 164, 213
CviQI GTAC 1 cut(s) 129
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaiI YATR 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 6, 174
Fsp4HI GCNGC 2 cut(s) 6, 174
FspBI CTAG 1 cut(s) 280
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 6, 174
HaeIII GGCC 2 cut(s) 8, 164
HapII CCGG 3 cut(s) 71, 138, 207
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 119, 227
HpaII CCGG 3 cut(s) 71, 138, 207
Hpy188III TCNNGA 3 cut(s) 76, 116, 238
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 68, 160, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpySE526I ACGT 1 cut(s) 98
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 8 cut(s) 28, 78, 84, 129, 146, 151, 220, 223
MaeI CTAG 1 cut(s) 280
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MflI RGATCY 1 cut(s) 219
MluCI AATT 2 cut(s) 145, 241
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 3 cut(s) 12, 15, 144
MseI TTAA 1 cut(s) 57
MspI CCGG 3 cut(s) 71, 138, 207
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 227
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 2 cut(s) 7, 175
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 7
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 6, 174
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 16
SetI ASST 4 cut(s) 31, 63, 101, 215
SfcI CTRYAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 145, 241
SsiI CCGC 2 cut(s) 5, 173
SspMI CTAG 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 145, 241
TatI WGTACW 1 cut(s) 128
TauI GCSGC 2 cut(s) 8, 176
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 55, 273
TspRI CASTG 2 cut(s) 55, 273
XapI RAATTY 1 cut(s) 145
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.