Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013506

Physical Location & Seq

Genomic Coordinates Reverse (-)

11506221 .. 11512787

Gene Structure 6567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1137700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGGATGGGTTTTGGGATGTTGGGTTTTGGTGGGAATTCTTGTAGGATCATTGTATTGGTTTAAGGACCAGAACAAGAAAGAGAGGGAAAATCAAAAGGGTCAAGTTCCAAAAGGGAAGTTAGGTTGGCCTTTCATAGGAGAAACCCTTGACTTCATTGCTTGTGGCTACACCTCTCGACCTGTCAGCTTCATGGAAAAACGCAGATCTCTGTATGGAAAGGTGTTCAAGACTAACATATTGGGGACTCCTATCATAGTATCCACGGATGCTGAGGTGAACAAGGTGGTAATGCAAAACCATGGAAATACTTTCATTCCTGCTTATCCGAAATCAATTACAGAACTGATGGGAAAATACTCCATTCTCCAAACAAATGGAAGCCTTCATAAGAGAGTGCATGGACTCATCGCTGGTTTTCTGAAATCACCACAGTTCAAAGCTCGAATCACCACCGACATCGAAAACTCAATCAAACTCAACTTGGCTCTTTGGAGAGACATGCAGTCTCCCATTTACGTCCAAGATGAAACCCAAAAGATTACCTTTGAAGTACTGGTTAAAGTATTAATGAGCGTTAATCCTGGTGAAGACTTAAACCTTCTCAAGAGAGAATTTGAAGAGTACATCAAAGGATTAATTTGCATACCTATCAAGCTCCCTGGAACAAGGCTATATAAATCTCTCAAGGCTAGAGAGCGATTGTTGAAGATGGTGGGGAAGATATTAGACATGAAAAAGGTAGCAATGGAGAATATAAATTGTCCTCAAAATACAATTCCAGTAAAAGATGCAATGGATGTGCTGTTAGAAGGTGGTGACCAAAACAACGAGGCTCAAGGCCTGCCGTTGGATTTCATCACCGGAAATATAATAGAGATGATGATCCCAGGAGAGGAGACTGTTCCCATGGCCATGACCCTAGCCGTCAAATTTCTAAGTGACAGCCCTGTGGCCTTAGACAAATTACGGGAGGAGAACATGGAATTGAAGAGGCAGAAGAAGAAGAAGACTGATTCCACGGAAAATTATGCATGGACTGATTACATGTCCTTGCCATTTACTCAAAATGTGATAAGTGAGACTCTTAGAATGGCAAATATCATCAATGCTGTTTGGAGAAAAGCTCAAAGGGATGTTGAAATCAAAGGTTATTTGATACCAAAAGGATGGTGTGTCTTGGCATCTTTTACTTCTGTTCACATGGATGAAGAAAACTATAAAAACCCATACCAGTTTGATCCTTGGAGATGGGAGAAATTAGAAGCTGCTGTAAACTACAACACTAGTTTTACACCCTTTGGTGGAGGACAGAGGCTGTGCCCTGGTTTGGAGCTATCCAGGCTTGAATTATCAATCTTTCTTCATCATCTTGTCACCAATTATAGATGGGTTGCTGAGAAGGATGACATTGTTCACTTTCCAATGGTCAAGATGAAGAGGAAGTTGCCCATTAAAGTCACGTCCATAAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009653 GO:0009791 GO:0009826 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010268 GO:0010817 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042445 GO:0042446 GO:0042592 GO:0042814 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0055088 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

493

Amino Acids

56.31

Weight (kDa)

9.15

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 471	2.8e-56	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36380 AT4G36380
fragaria_vesca	FvH4_1g12330
malus_domestica	MD02G1137700.v1.1 MD15G1251500.v1.1
prunus_persica	Prupe.7G162900_v2.0.a1
pyrus_communis	pycom02g10900 pycom15g22160
rosa_chinensis	RchiOBHm_Chr2g0100151
rosa_laevigata	RLG00000016941
rosa_multiflora	Rmu_sc0018554.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142520
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135100 Rh2BG138500 Rh2CG140300 Rh2DG140500
rosa_wichuraiana	Rw2G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	55, 880, 1235
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	3 cut(s)	36, 614, 932
AfaI	GTAC	2 cut(s)	555, 626
AfiI	CCNNNNNNNGG	5 cut(s)	137, 850, 895, 1304, 1330
AflIII	ACRYGT	1 cut(s)	1047
AgsI	TTSAA	8 cut(s)	229, 439, 551, 620, 709, 991, 1142, 1349
AhdI	GACNNNNNGTC	1 cut(s)	505
AhlI	ACTAGT	1 cut(s)	1286
AjiI	CACGTC	1 cut(s)	1464
AjnI	CCWGG	5 cut(s)	583, 661, 889, 1324, 1340
AluBI	AGCT	6 cut(s)	189, 443, 658, 1127, 1268, 1336
AluI	AGCT	6 cut(s)	189, 443, 658, 1127, 1268, 1336
Alw26I	GTCTC	4 cut(s)	492, 513, 893, 1076
AlwI	GGATC	3 cut(s)	55, 880, 1235
AlwNI	CAGNNNCTG	1 cut(s)	1318
AoxI	GGCC	4 cut(s)	128, 841, 912, 954
ApeKI	GCWGC	1 cut(s)	1268
ApoI	RAATTY	3 cut(s)	36, 614, 932
AseI	ATTAAT	2 cut(s)	569, 638
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	7 cut(s)	289, 420, 442, 599, 830, 853, 1369
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	1325
BalI	TGGCCA	1 cut(s)	914
BbsI	GAAGAC	2 cut(s)	597, 1016
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	1255
BccI	CCATC	5 cut(s)	343, 706, 1164, 1245, 1383
BceAI	ACGGC	2 cut(s)	832, 911
BciT130I	CCWGG	5 cut(s)	585, 663, 891, 1326, 1342
BciVI	GTATCC	1 cut(s)	271
BcoDI	GTCTC	4 cut(s)	492, 513, 893, 1076
BcuI	ACTAGT	1 cut(s)	1286
BfaI	CTAG	3 cut(s)	693, 923, 1287
BfuI	GTATCC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	1 cut(s)	1269
BlsI	GCNGC	1 cut(s)	1270
BmcAI	AGTACT	1 cut(s)	555
Bme1390I	CCNGG	5 cut(s)	585, 663, 891, 1326, 1342
Bme18I	GGWCC	1 cut(s)	67
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmgBI	CACGTC	1 cut(s)	1464
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	5 cut(s)	585, 663, 891, 1326, 1342
BmsI	GCATC	3 cut(s)	259, 781, 1193
BpiI	GAAGAC	2 cut(s)	597, 1016
BplI	GAGNNNNNCTC	2 cut(s)	1111, 1143
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	3 cut(s)	590, 671, 822
BsaBI	GATNNNNATC	1 cut(s)	884
BsaJI	CCNNGG	8 cut(s)	264, 301, 661, 889, 909, 1020, 1244, 1324
BsaWI	WCCGGW	1 cut(s)	863
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 850, 895, 1304, 1330
Bse1I	ACTGG	3 cut(s)	561, 782, 1234
Bse3DI	GCAATG	3 cut(s)	156, 753, 801
Bse8I	GATNNNNATC	1 cut(s)	884
BseBI	CCWGG	5 cut(s)	585, 663, 891, 1326, 1342
BseDI	CCNNGG	8 cut(s)	264, 301, 661, 889, 909, 1020, 1244, 1324
BseGI	GGATG	8 cut(s)	11, 23, 274, 805, 1141, 1175, 1213, 1411
BseJI	GATNNNNATC	1 cut(s)	884
BseLI	CCNNNNNNNGG	5 cut(s)	137, 850, 895, 1304, 1330
BseMI	GCAATG	3 cut(s)	156, 753, 801
BseMII	CTCAG	2 cut(s)	264, 1389
BseNI	ACTGG	3 cut(s)	561, 782, 1234
BseRI	GAGGAG	2 cut(s)	911, 989
BseSI	GKGCMC	1 cut(s)	1325
BseXI	GCAGC	1 cut(s)	1255
BshFI	GGCC	4 cut(s)	130, 843, 914, 956
BsiSI	CCGG	1 cut(s)	864
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	5 cut(s)	137, 850, 895, 1304, 1330
BsmAI	GTCTC	4 cut(s)	492, 513, 893, 1076
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	130, 843, 914, 956
Bsp1286I	GDGCHC	1 cut(s)	1325
Bsp143I	GATC	4 cut(s)	47, 206, 885, 1240
Bsp19I	CCATGG	2 cut(s)	301, 909
BspANI	GGCC	4 cut(s)	130, 843, 914, 956
BspCNI	CTCAG	2 cut(s)	265, 1390
BspPI	GGATC	3 cut(s)	55, 880, 1235
BsrDI	GCAATG	3 cut(s)	156, 753, 801
BsrI	ACTGG	3 cut(s)	561, 782, 1234
BssECI	CCNNGG	8 cut(s)	264, 301, 661, 889, 909, 1020, 1244, 1324
BssMI	GATC	4 cut(s)	47, 206, 885, 1240
BssT1I	CCWWGG	3 cut(s)	301, 909, 1244
Bst2UI	CCWGG	5 cut(s)	585, 663, 891, 1326, 1342
Bst4CI	ACNGT	2 cut(s)	435, 904
Bst6I	CTCTTC	3 cut(s)	615, 986, 1433
BstC8I	GCNNGC	1 cut(s)	845
BstDEI	CTNAG	6 cut(s)	273, 938, 958, 1088, 1398, 1476
BstDSI	CCRYGG	4 cut(s)	264, 301, 909, 1020
BstEII	GGTNACC	1 cut(s)	818
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	8 cut(s)	11, 23, 274, 805, 1141, 1175, 1213, 1411
BstKTI	GATC	4 cut(s)	50, 209, 888, 1243
BstMAI	GTCTC	4 cut(s)	492, 513, 893, 1076
BstMBI	GATC	4 cut(s)	47, 206, 885, 1240
BstMWI	GCNNNNNNNGC	1 cut(s)	1342
BstNI	CCWGG	5 cut(s)	585, 663, 891, 1326, 1342
BstNSI	RCATGY	2 cut(s)	505, 1051
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	5 cut(s)	583, 661, 889, 1324, 1340
BstSLI	GKGCMC	1 cut(s)	1325
BstV1I	GCAGC	1 cut(s)	1255
BstV2I	GAAGAC	2 cut(s)	597, 1016
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	2 cut(s)	377, 1170
BstYI	RGATCY	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	4 cut(s)	130, 843, 914, 956
BtgI	CCRYGG	4 cut(s)	264, 301, 909, 1020
BtgZI	GCGATG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	1464
BtsCI	GGATG	8 cut(s)	11, 23, 274, 805, 1141, 1175, 1213, 1411
Cac8I	GCNNGC	1 cut(s)	845
CaiI	CAGNNNCTG	1 cut(s)	1318
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	554, 625
CviQI	GTAC	2 cut(s)	554, 625
DdeI	CTNAG	6 cut(s)	273, 938, 958, 1088, 1398, 1476
DpnI	GATC	4 cut(s)	49, 208, 887, 1242
DpnII	GATC	4 cut(s)	47, 206, 885, 1240
DriI	GACNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	3 cut(s)	615, 986, 1433
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	3 cut(s)	615, 986, 1433
Eco130I	CCWWGG	3 cut(s)	301, 909, 1244
Eco147I	AGGCCT	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	818
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	5 cut(s)	583, 661, 889, 1324, 1340
EcoT14I	CCWWGG	3 cut(s)	301, 909, 1244
EcoT22I	ATGCAT	1 cut(s)	1036
ErhI	CCWWGG	3 cut(s)	301, 909, 1244
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	1269
FokI	GGATG	8 cut(s)	18, 30, 281, 812, 1148, 1182, 1220, 1418
Fsp4HI	GCNGC	1 cut(s)	1269
FspBI	CTAG	3 cut(s)	693, 923, 1287
GluI	GCNGC	1 cut(s)	1269
HaeIII	GGCC	4 cut(s)	130, 843, 914, 956
HapII	CCGG	1 cut(s)	864
HinfI	GANTC	5 cut(s)	247, 405, 447, 1016, 1084
HpaII	CCGG	1 cut(s)	864
HphI	GGTGA	7 cut(s)	289, 420, 442, 599, 830, 853, 1369
Hpy166II	GTNNAC	4 cut(s)	280, 1201, 1276, 1417
Hpy188I	TCNGA	2 cut(s)	330, 423
Hpy188III	TCNNGA	4 cut(s)	177, 229, 607, 1432
Hpy8I	GTNNAC	4 cut(s)	280, 1201, 1276, 1417
HpyAV	CCTTC	4 cut(s)	395, 611, 806, 1396
HpyCH4III	ACNGT	2 cut(s)	435, 904
HpyCH4IV	ACGT	2 cut(s)	519, 1463
HpyCH4V	TGCA	6 cut(s)	295, 400, 505, 645, 794, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1342
HpyF3I	CTNAG	6 cut(s)	273, 938, 958, 1088, 1398, 1476
HpySE526I	ACGT	2 cut(s)	519, 1463
Kzo9I	GATC	4 cut(s)	47, 206, 885, 1240
LmnI	GCTCC	2 cut(s)	663, 1333
Lsp1109I	GCAGC	1 cut(s)	1255
LweI	GCATC	3 cut(s)	259, 781, 1193
MaeI	CTAG	3 cut(s)	693, 923, 1287
MaeII	ACGT	2 cut(s)	519, 1463
MaeIII	GTNAC	4 cut(s)	818, 941, 1375, 1459
MalI	GATC	4 cut(s)	49, 208, 887, 1242
MboI	GATC	4 cut(s)	47, 206, 885, 1240
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	1325
MlsI	TGGCCA	1 cut(s)	914
MluNI	TGGCCA	1 cut(s)	914
MlyI	GAGTC	3 cut(s)	241, 399, 1078
MmeI	TCCRAC	1 cut(s)	831
Mox20I	TGGCCA	1 cut(s)	914
Mph1103I	ATGCAT	1 cut(s)	1036
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	7 cut(s)	63, 561, 569, 579, 596, 638, 1455
MslI	CAYNNNNRTG	2 cut(s)	914, 1206
Msp20I	TGGCCA	1 cut(s)	914
MspI	CCGG	1 cut(s)	864
MspR9I	CCNGG	5 cut(s)	585, 663, 891, 1326, 1342
MvaI	CCWGG	5 cut(s)	585, 663, 891, 1326, 1342
MwoI	GCNNNNNNNGC	1 cut(s)	1342
NcoI	CCATGG	2 cut(s)	301, 909
NdeII	GATC	4 cut(s)	47, 206, 885, 1240
NmuCI	GTSAC	4 cut(s)	818, 941, 1375, 1459
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	2 cut(s)	505, 1051
PceI	AGGCCT	1 cut(s)	843
PciI	ACATGT	1 cut(s)	1047
PfeI	GAWTC	2 cut(s)	447, 1016
PkrI	GCNGC	1 cut(s)	1270
PleI	GAGTC	3 cut(s)	241, 399, 1078
PpsI	GAGTC	3 cut(s)	241, 399, 1078
PscI	ACATGT	1 cut(s)	1047
PshBI	ATTAAT	2 cut(s)	569, 638
Psp6I	CCWGG	5 cut(s)	583, 661, 889, 1324, 1340
PspEI	GGTNACC	1 cut(s)	818
PspGI	CCWGG	5 cut(s)	583, 661, 889, 1324, 1340
PspPI	GGNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	1318
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	555, 626
RsaNI	GTAC	2 cut(s)	554, 625
RseI	CAYNNNNRTG	2 cut(s)	914, 1206
SaqAI	TTAA	7 cut(s)	63, 561, 569, 579, 596, 638, 1455
SatI	GCNGC	1 cut(s)	1269
Sau3AI	GATC	4 cut(s)	47, 206, 885, 1240
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	555
SchI	GAGTC	3 cut(s)	241, 399, 1078
ScrFI	CCNGG	5 cut(s)	585, 663, 891, 1326, 1342
SduI	GDGCHC	1 cut(s)	1325
SfaNI	GCATC	3 cut(s)	259, 781, 1193
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	914, 1206
SmlI	CTYRAG	3 cut(s)	605, 686, 837
SmoI	CTYRAG	3 cut(s)	605, 686, 837
SpeI	ACTAGT	1 cut(s)	1286
SseBI	AGGCCT	1 cut(s)	843
SspMI	CTAG	3 cut(s)	693, 923, 1287
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	5 cut(s)	583, 661, 889, 1324, 1340
StyI	CCWWGG	3 cut(s)	301, 909, 1244
TaaI	ACNGT	2 cut(s)	435, 904
TaiI	ACGT	2 cut(s)	522, 1466
TaqI	TCGA	3 cut(s)	178, 445, 462
TatI	WGTACW	2 cut(s)	553, 624
TfiI	GAWTC	2 cut(s)	447, 1016
Tru1I	TTAA	7 cut(s)	63, 561, 569, 579, 596, 638, 1455
Tru9I	TTAA	7 cut(s)	63, 561, 569, 579, 596, 638, 1455
TseFI	GTSAC	4 cut(s)	818, 941, 1375, 1459
TseI	GCWGC	1 cut(s)	1268
Tsp45I	GTSAC	4 cut(s)	818, 941, 1375, 1459
TspGWI	ACGGA	2 cut(s)	281, 1037
VpaK11BI	GGWCC	1 cut(s)	67
VspI	ATTAAT	2 cut(s)	569, 638
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	3 cut(s)	36, 614, 932
XceI	RCATGY	2 cut(s)	505, 1051
XspI	CTAG	3 cut(s)	693, 923, 1287
ZrmI	AGTACT	1 cut(s)	555
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.