Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013506

Physical Location & Seq

Genomic Coordinates Reverse (-)

21180738 .. 21188415

Gene Structure 7678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1251500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGGATGGGTTTTGGGATGTTGGGTTTTGGTGGGAATTCTTGTAGGATCATTGTACTGGTTTAATGAGCAGAAGAAGAACCAGAACAAGAACGAGAGGGAAAATCAAAAGGGTCAAGTTCCAAAAGGAAAGTTAGGTTGGCCTTTGATAGGAGAAACCATTGACTTCATTGCTTGTGGCTACACCTCTCGACCTGTCAGCTTCATGGAAAAACGCAGATCTCTGTATGGAAAGGTGTTCAAGACAAACATATTGGGGACTCCTATCATAGTGTCTACGGATGCTGAGGTGAACAAGGTGGTAATGCAAAACCATGGAAATACCTTCATTCCTGCTTATCCGAAATCAATTACAGAACTGATGGGAAAATATTCAATTCTCCAAATAAATGGAAGCCTTCATAAGAGAGTGCATGGACTCATCGCTGGTTTTCTGAAATCACCACAGTTCAAAGCTCGAATCACCGCCGACATCGAAAACTCAGTCAAGCTCAACCTGTCTCTTTGGAGAGACATGCAGTCTCCCATTTACGTCCAAGATGAAACCCAAAAGATTACATTTGAAGTTTTGGTTAAAGTATTAATGAGCATTGATCCCGGTGAAGACTTAAACCTTCTGAAGAGAGAATTTGAAGAGTTCATCAAGGGTTTAATTTGCATACCTATCAAGCTCCCTGGAACTAGGCTGTATAAATCTCTCAAGGCTAGAGAGCGATTGTTGAAGATGGTGGGGAAAATTTTAGAGGTGAAAAAGATGGCAATGGAAAATACAAATTGTACCCAAATTACAATTCCAGTCAAAGACGCAATGGATGTGCTGTTACGTGAAGGTGGTGAACAAAACAACGAGACTCATGGCCTGCCGTTGGATTTCATCACCGGAAATATAATAGAGATGATGATCCCAGGAGAGGAGACTGTTCCCATGGCCATGACCCTAGCGGTCAAATTCCTAAGTGACAGCCCTGTGGCGTTAGACAAATTACGGGAGGAGAACATGGAATTCAAGAGGCAGAAGAACAAGTTTGATTCCTCGGAAAATTATGCATGGACTGATTACATGTCCTTGCCATTTACTCAAAATGTGATAAGTGAGACTCTTAGAATGGCAAATATCATCAATGCTGTTTGGAGAAAAGCTCAAAGGGATGTTGAAATCAAAGGTTATCTGATACCAAAAGGATGGTGTGTCTTGGCATCTTTTACTTCTGTTCATATGGATGAAGAAAACTACAAAAGCCCATATCAGTTTGATCCATGGAGATGGGAGAAATTAGAAGCTGCTGTAAACTACAACACTAGATTTACACCATTTGGTGGAGGACAGAGGCTTTGCCCTGGTTTGGAGCTATCCAGGCTTGAATTATCAGTCTTTCTTCATCATCTTGTCACTAATTATAGATGGGTAGCTGAGAAGGATGGCATTGTTCACTTTCCAACGGTCAAGATGAAGAGGAAGCTGCCCATTACAGTCACATCCATAAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009653 GO:0009791 GO:0009826 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010268 GO:0010817 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042445 GO:0042446 GO:0042592 GO:0042814 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0055088 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

497

Amino Acids

56.77

Weight (kDa)

9.12

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	41 - 472	5.5e-54	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36380 AT4G36380
fragaria_vesca	FvH4_1g12330
malus_domestica	MD02G1137700.v1.1 MD15G1251500.v1.1
prunus_persica	Prupe.7G162900_v2.0.a1
pyrus_communis	pycom02g10900 pycom15g22160
rosa_chinensis	RchiOBHm_Chr2g0100151
rosa_laevigata	RLG00000016941
rosa_multiflora	Rmu_sc0018554.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142520
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135100 Rh2BG138500 Rh2CG140300 Rh2DG140500
rosa_wichuraiana	Rw2G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1316
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	2 cut(s)	465, 941
AclWI	GGATC	4 cut(s)	55, 587, 895, 1247
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	5 cut(s)	36, 626, 735, 947, 1001
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	2 cut(s)	56, 778
AfiI	CCNNNNNNNGG	5 cut(s)	149, 865, 910, 1316, 1342
AflIII	ACRYGT	1 cut(s)	1059
AgsI	TTSAA	9 cut(s)	241, 375, 451, 563, 632, 721, 1006, 1154, 1361
AhdI	GACNNNNNGTC	1 cut(s)	517
AjnI	CCWGG	4 cut(s)	673, 904, 1336, 1352
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 774, 806
AluBI	AGCT	9 cut(s)	201, 455, 490, 670, 1139, 1280, 1348, 1409, 1459
AluI	AGCT	9 cut(s)	201, 455, 490, 670, 1139, 1280, 1348, 1409, 1459
Alw26I	GTCTC	6 cut(s)	504, 504, 525, 842, 908, 1088
AlwI	GGATC	4 cut(s)	55, 587, 895, 1247
AoxI	GGCC	3 cut(s)	140, 856, 927
ApeKI	GCWGC	2 cut(s)	1280, 1459
ApoI	RAATTY	5 cut(s)	36, 626, 735, 947, 1001
ArsI	GACNNNNNNTTYG	4 cut(s)	468, 500, 1314, 1346
AseI	ATTAAT	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	7 cut(s)	301, 432, 454, 611, 757, 845, 868
BalI	TGGCCA	1 cut(s)	929
BbsI	GAAGAC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	1267, 1446
BccI	CCATC	7 cut(s)	355, 718, 748, 1176, 1257, 1395, 1412
BceAI	ACGGC	1 cut(s)	847
BciT130I	CCWGG	4 cut(s)	675, 906, 1338, 1354
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	6 cut(s)	504, 504, 525, 842, 908, 1088
BfaI	CTAG	4 cut(s)	681, 705, 938, 1299
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	1281, 1460
BlsI	GCNGC	2 cut(s)	1282, 1461
Bme1390I	CCNGG	5 cut(s)	597, 675, 906, 1338, 1354
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmrFI	CCNGG	5 cut(s)	597, 675, 906, 1338, 1354
BmsI	GCATC	2 cut(s)	271, 1205
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	1123, 1155
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	824
BsaBI	GATNNNNATC	1 cut(s)	899
BsaJI	CCNNGG	7 cut(s)	313, 673, 904, 924, 1032, 1256, 1336
BsaWI	WCCGGW	1 cut(s)	878
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 865, 910, 1316, 1342
Bse1I	ACTGG	2 cut(s)	62, 794
Bse3DI	GCAATG	3 cut(s)	168, 765, 813
Bse8I	GATNNNNATC	1 cut(s)	899
BseBI	CCWGG	4 cut(s)	675, 906, 1338, 1354
BseDI	CCNNGG	7 cut(s)	313, 673, 904, 924, 1032, 1256, 1336
BseGI	GGATG	9 cut(s)	11, 23, 286, 817, 1153, 1187, 1225, 1423, 1475
BseJI	GATNNNNATC	1 cut(s)	899
BseLI	CCNNNNNNNGG	5 cut(s)	149, 865, 910, 1316, 1342
BseMI	GCAATG	3 cut(s)	168, 765, 813
BseMII	CTCAG	3 cut(s)	276, 495, 1401
BseNI	ACTGG	2 cut(s)	62, 794
BseRI	GAGGAG	2 cut(s)	926, 1004
BseXI	GCAGC	2 cut(s)	1267, 1446
BshFI	GGCC	3 cut(s)	142, 858, 929
BsiSI	CCGG	2 cut(s)	597, 879
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	5 cut(s)	149, 865, 910, 1316, 1342
BsmAI	GTCTC	6 cut(s)	504, 504, 525, 842, 908, 1088
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	142, 858, 929
Bsp143I	GATC	5 cut(s)	47, 218, 592, 900, 1252
Bsp19I	CCATGG	3 cut(s)	313, 924, 1256
BspACI	CCGC	2 cut(s)	465, 941
BspANI	GGCC	3 cut(s)	142, 858, 929
BspCNI	CTCAG	3 cut(s)	277, 494, 1402
BspPI	GGATC	4 cut(s)	55, 587, 895, 1247
BsrDI	GCAATG	3 cut(s)	168, 765, 813
BsrI	ACTGG	2 cut(s)	62, 794
BssECI	CCNNGG	7 cut(s)	313, 673, 904, 924, 1032, 1256, 1336
BssMI	GATC	5 cut(s)	47, 218, 592, 900, 1252
BssT1I	CCWWGG	3 cut(s)	313, 924, 1256
Bst2UI	CCWGG	4 cut(s)	675, 906, 1338, 1354
Bst4CI	ACNGT	4 cut(s)	447, 919, 1441, 1471
Bst6I	CTCTTC	3 cut(s)	614, 627, 1445
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	1 cut(s)	860
BstDEI	CTNAG	6 cut(s)	285, 481, 953, 1100, 1410, 1488
BstDSI	CCRYGG	3 cut(s)	313, 924, 1256
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	9 cut(s)	11, 23, 286, 817, 1153, 1187, 1225, 1423, 1475
BstKTI	GATC	5 cut(s)	50, 221, 595, 903, 1255
BstMAI	GTCTC	6 cut(s)	504, 504, 525, 842, 908, 1088
BstMBI	GATC	5 cut(s)	47, 218, 592, 900, 1252
BstMWI	GCNNNNNNNGC	1 cut(s)	1354
BstNI	CCWGG	4 cut(s)	675, 906, 1338, 1354
BstNSI	RCATGY	2 cut(s)	517, 1063
BstSCI	CCNGG	5 cut(s)	595, 673, 904, 1336, 1352
BstV1I	GCAGC	2 cut(s)	1267, 1446
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	3 cut(s)	389, 1182, 1263
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	142, 858, 929
BtgI	CCRYGG	3 cut(s)	313, 924, 1256
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	9 cut(s)	11, 23, 286, 817, 1153, 1187, 1225, 1423, 1475
Cac8I	GCNNGC	1 cut(s)	860
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	2 cut(s)	55, 777
CviQI	GTAC	2 cut(s)	55, 777
DdeI	CTNAG	6 cut(s)	285, 481, 953, 1100, 1410, 1488
DpnI	GATC	5 cut(s)	49, 220, 594, 902, 1254
DpnII	GATC	5 cut(s)	47, 218, 592, 900, 1252
DriI	GACNNNNNGTC	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	927
Eam1104I	CTCTTC	3 cut(s)	614, 627, 1445
Eam1105I	GACNNNNNGTC	1 cut(s)	517
EarI	CTCTTC	3 cut(s)	614, 627, 1445
Eco130I	CCWWGG	3 cut(s)	313, 924, 1256
Eco57I	CTGAAG	1 cut(s)	638
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRI	GAATTC	2 cut(s)	36, 1001
EcoRII	CCWGG	4 cut(s)	673, 904, 1336, 1352
EcoT14I	CCWWGG	3 cut(s)	313, 924, 1256
EcoT22I	ATGCAT	1 cut(s)	1048
ErhI	CCWWGG	3 cut(s)	313, 924, 1256
FaqI	GGGAC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	1215
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	1281, 1460
FokI	GGATG	9 cut(s)	18, 30, 293, 824, 1160, 1194, 1232, 1430, 1462
Fsp4HI	GCNGC	2 cut(s)	1281, 1460
FspBI	CTAG	4 cut(s)	681, 705, 938, 1299
GluI	GCNGC	2 cut(s)	1281, 1460
HaeIII	GGCC	3 cut(s)	142, 858, 929
HapII	CCGG	2 cut(s)	597, 879
HgaI	GACGC	1 cut(s)	812
HinfI	GANTC	6 cut(s)	259, 417, 459, 850, 1028, 1096
HpaII	CCGG	2 cut(s)	597, 879
HphI	GGTGA	7 cut(s)	301, 432, 454, 611, 757, 845, 868
Hpy166II	GTNNAC	5 cut(s)	276, 292, 836, 1288, 1429
Hpy188I	TCNGA	5 cut(s)	342, 435, 618, 1036, 1170
Hpy188III	TCNNGA	4 cut(s)	189, 241, 1006, 1444
Hpy8I	GTNNAC	5 cut(s)	276, 292, 836, 1288, 1429
HpyAV	CCTTC	5 cut(s)	334, 407, 623, 821, 1408
HpyCH4III	ACNGT	4 cut(s)	447, 919, 1441, 1471
HpyCH4IV	ACGT	2 cut(s)	531, 823
HpyCH4V	TGCA	5 cut(s)	307, 412, 517, 657, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1354
HpyF3I	CTNAG	6 cut(s)	285, 481, 953, 1100, 1410, 1488
HpySE526I	ACGT	2 cut(s)	531, 823
Kzo9I	GATC	5 cut(s)	47, 218, 592, 900, 1252
LmnI	GCTCC	2 cut(s)	675, 1345
Lsp1109I	GCAGC	2 cut(s)	1267, 1446
LweI	GCATC	2 cut(s)	271, 1205
MaeI	CTAG	4 cut(s)	681, 705, 938, 1299
MaeII	ACGT	2 cut(s)	531, 823
MaeIII	GTNAC	4 cut(s)	819, 956, 1387, 1471
MalI	GATC	5 cut(s)	49, 220, 594, 902, 1254
MboI	GATC	5 cut(s)	47, 218, 592, 900, 1252
MflI	RGATCY	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	929
MluNI	TGGCCA	1 cut(s)	929
MlyI	GAGTC	4 cut(s)	253, 411, 844, 1090
MmeI	TCCRAC	2 cut(s)	846, 1460
Mox20I	TGGCCA	1 cut(s)	929
Mph1103I	ATGCAT	1 cut(s)	1048
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	929
MseI	TTAA	5 cut(s)	63, 573, 581, 608, 650
MslI	CAYNNNNRTG	3 cut(s)	929, 1218, 1261
Msp20I	TGGCCA	1 cut(s)	929
MspI	CCGG	2 cut(s)	597, 879
MspR9I	CCNGG	5 cut(s)	597, 675, 906, 1338, 1354
MvaI	CCWGG	4 cut(s)	675, 906, 1338, 1354
MwoI	GCNNNNNNNGC	1 cut(s)	1354
NciI	CCSGG	1 cut(s)	597
NcoI	CCATGG	3 cut(s)	313, 924, 1256
NdeI	CATATG	1 cut(s)	1215
NdeII	GATC	5 cut(s)	47, 218, 592, 900, 1252
NmuCI	GTSAC	3 cut(s)	956, 1387, 1471
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	2 cut(s)	517, 1063
PciI	ACATGT	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	459, 1028
PflMI	CCANNNNNTGG	1 cut(s)	1316
PkrI	GCNGC	2 cut(s)	1282, 1461
PleI	GAGTC	4 cut(s)	253, 411, 844, 1090
PpsI	GAGTC	4 cut(s)	253, 411, 844, 1090
Ppu21I	YACGTR	1 cut(s)	824
PscI	ACATGT	1 cut(s)	1059
PshBI	ATTAAT	1 cut(s)	581
Psp6I	CCWGG	4 cut(s)	673, 904, 1336, 1352
PspGI	CCWGG	4 cut(s)	673, 904, 1336, 1352
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	56, 778
RsaNI	GTAC	2 cut(s)	55, 777
RseI	CAYNNNNRTG	3 cut(s)	929, 1218, 1261
SaqAI	TTAA	5 cut(s)	63, 573, 581, 608, 650
SatI	GCNGC	2 cut(s)	1281, 1460
Sau3AI	GATC	5 cut(s)	47, 218, 592, 900, 1252
SchI	GAGTC	4 cut(s)	253, 411, 844, 1090
ScrFI	CCNGG	5 cut(s)	597, 675, 906, 1338, 1354
SfaNI	GCATC	2 cut(s)	271, 1205
SmiMI	CAYNNNNRTG	3 cut(s)	929, 1218, 1261
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SsiI	CCGC	2 cut(s)	465, 941
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	4 cut(s)	681, 705, 938, 1299
StyD4I	CCNGG	5 cut(s)	595, 673, 904, 1336, 1352
StyI	CCWWGG	3 cut(s)	313, 924, 1256
TaaI	ACNGT	4 cut(s)	447, 919, 1441, 1471
TaiI	ACGT	2 cut(s)	534, 826
TaqI	TCGA	3 cut(s)	190, 457, 474
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	459, 1028
Tru1I	TTAA	5 cut(s)	63, 573, 581, 608, 650
Tru9I	TTAA	5 cut(s)	63, 573, 581, 608, 650
TseFI	GTSAC	3 cut(s)	956, 1387, 1471
TseI	GCWGC	2 cut(s)	1280, 1459
Tsp45I	GTSAC	3 cut(s)	956, 1387, 1471
TspGWI	ACGGA	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	1316
VspI	ATTAAT	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	5 cut(s)	36, 626, 735, 947, 1001
XceI	RCATGY	2 cut(s)	517, 1063
XmiI	GTMKAC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	4 cut(s)	681, 705, 938, 1299
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.