MD02G1152200.v1.1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
12557394 .. 12558377
984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1152200.v1.1.491

Sequence Viewer

Length: 984 bp
ATGAGAGTGCCTGTTTCTTCCCCACACAGCAACAACAACAACCAATCTCCCAAGCACAGCACCCAGACTAATAACCAAAGTGTCAACTTTCACCTAGGTATTTCGAACTTGGGGGGCTACGAGCCCACCTCGGTTCTCGACCTCCGCCACAGCCCCAGCCCTGTCTCCGCCGAGAAACCCTCCAAAATTTTGGCAATCTCCGACGTGCTGTCCCACTCGAACCATGACCCTGTGGAGTGGGAGGAGCAAGTGGACTGGGACTCAATCATGAAAGACTTAGGGTTGCACGACGACAACGTCCCGAACCTCAAGAATTCAATCCCGCAATTGAATTCAAACGATCCTCAGATTTCGGAGTACCTGCATCCTCAACCGTTCGATCCCACCCAGCTCGTCCACTCCGATTACAGCATCAATCTCTCCGAAGTGTACTCCTCCCAGAATTGTTACGACCATGCGATCAACGACTTCCATCAATCGGGCAACTGGAACGTAGGGGTTGATTTCATAGAGGAATTAATCCGCGCCGCGGACTGTTTCGACTCGGACGAGTTGCAACTCGCTCAGGTGATCCTAGACCGTTTGAACAACAGGATGCGATCCTCCTCCCCGTCGAAACCCGTCGGAAAGCCACTCCAGCGCGCCGCGGTTTATTTCAAGGACGCTCTTCAATCCCTCCTCAATGGCTCTGATACGGCGGCGCGCGAGTTCTCTTCCTCGTCCGACATCGTCCATACAATCCGCGCCTACAAGAGCTTTTCCGGAATTTCGCCGGTCCCGATGTTCTCTCACTTCACAACAAACCAGGCCCTGCTCGAAGCCCTCAACGGATCAGCCTTCATCCACGTCATCGACTTTGACATCGGCCTGGGCGGCCAGTACGCTTCCCTAATGAAAGAGCTCGCCGAGAAAGCTGACGTGGCGAGCCGAAATAAAGGCAACCAGGTCCCACCGGTGCTCCGCATCACCGCCGTCGTGCCATGA

Protein Analysis

328

Amino Acids

36.11

Weight (kDa)

5.26

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 171 - 326 2.8e-38 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36710
fragaria_vesca FvH4_1g13740
malus_domestica MD02G1152200.v1.1 MD15G1266500.v1.1
prunus_persica Prupe.7G150900_v2.0.a1
pyrus_communis pycom02g11950
rosa_chinensis RchiOBHm_Chr2g0102171
rosa_laevigata RLG00000017134
rosa_multiflora Rmu_co8491613.1_g000001 Rmu_sc0000157.1_g000043
rosa_roxburghii Rroxscaffold_2G00140730
rosa_rugosa Rorug02G0104800
rosa_samantha Rh2AG153200 Rh2BG159100 Rh2CG158600 Rh2DG158800
rosa_wichuraiana Rw2G011960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 369
AccII CGCG 7 cut(s) 525, 530, 642, 647, 703, 705, 744
AccIII TCCGGA 1 cut(s) 761
AclWI GGATC 5 cut(s) 335, 374, 565, 594, 838
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 4 cut(s) 186, 313, 331, 765
AfaI GTAC 3 cut(s) 359, 431, 881
AfiI CCNNNNNNNGG 2 cut(s) 478, 529
AgeI ACCGGT 1 cut(s) 952
AgsI TTSAA 6 cut(s) 318, 331, 336, 586, 658, 671
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 3 cut(s) 205, 847, 919
AjnI CCWGG 3 cut(s) 804, 867, 942
AluBI AGCT 4 cut(s) 391, 756, 901, 914
AluI AGCT 4 cut(s) 391, 756, 901, 914
Alw21I GWGCWC 2 cut(s) 903, 960
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 5 cut(s) 335, 374, 565, 594, 838
AlwNI CAGNNNCTG 1 cut(s) 811
Aor13HI TCCGGA 1 cut(s) 761
AoxI GGCC 3 cut(s) 807, 865, 874
ApoI RAATTY 4 cut(s) 186, 313, 331, 765
AseI ATTAAT 1 cut(s) 518
AsiGI ACCGGT 1 cut(s) 952
AspA2I CCTAGG 1 cut(s) 94
AspLEI GCGC 6 cut(s) 527, 642, 644, 703, 705, 746
AspS9I GGNCC 3 cut(s) 775, 808, 946
AsuHPI GGTGA 3 cut(s) 83, 580, 958
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 775, 946
AvrII CCTAGG 1 cut(s) 94
BanII GRGCYC 2 cut(s) 126, 903
Bbv12I GWGCWC 2 cut(s) 903, 960
BccI CCATC 1 cut(s) 480
BceAI ACGGC 2 cut(s) 711, 956
BciT130I CCWGG 3 cut(s) 806, 869, 944
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 95, 575
BfuAI ACCTGC 1 cut(s) 369
BglI GCCNNNNNGGC 1 cut(s) 873
BisI GCNGC 4 cut(s) 528, 645, 699, 874
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 4 cut(s) 529, 646, 700, 875
Bme1390I CCNGG 3 cut(s) 806, 869, 944
Bme18I GGWCC 2 cut(s) 775, 946
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgBI CACGTC 3 cut(s) 205, 847, 919
BmgT120I GGNCC 3 cut(s) 775, 808, 946
BmiI GGNNCC 2 cut(s) 777, 948
BmrFI CCNGG 3 cut(s) 806, 869, 944
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 4 cut(s) 373, 420, 585, 972
BmuI ACTGGG 1 cut(s) 265
BplI GAGNNNNNCTC 4 cut(s) 113, 145, 164, 196
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 5 cut(s) 94, 129, 528, 645, 868
BsaWI WCCGGW 2 cut(s) 761, 952
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 529
Bse118I RCCGGY 2 cut(s) 772, 952
Bse1I ACTGG 3 cut(s) 260, 491, 877
BseAI TCCGGA 1 cut(s) 761
BseBI CCWGG 3 cut(s) 806, 869, 944
BseDI CCNNGG 5 cut(s) 94, 129, 528, 645, 868
BseGI GGATG 3 cut(s) 364, 600, 840
BseLI CCNNNNNNNGG 2 cut(s) 478, 529
BseMII CTCAG 2 cut(s) 359, 578
BseNI ACTGG 3 cut(s) 260, 491, 877
BsePI GCGCGC 2 cut(s) 640, 701
BseRI GAGGAG 4 cut(s) 257, 424, 595, 668
BseYI CCCAGC 2 cut(s) 155, 387
Bsh1236I CGCG 7 cut(s) 525, 530, 642, 647, 703, 705, 744
BshFI GGCC 3 cut(s) 809, 867, 876
BshTI ACCGGT 1 cut(s) 952
BsiHKAI GWGCWC 2 cut(s) 903, 960
BsiSI CCGG 3 cut(s) 762, 773, 953
BslFI GGGAC 5 cut(s) 196, 272, 284, 761, 932
BslI CCNNNNNNNGG 2 cut(s) 478, 529
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 5 cut(s) 196, 272, 284, 761, 932
BsnI GGCC 3 cut(s) 809, 867, 876
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 126, 903, 960
Bsp13I TCCGGA 1 cut(s) 761
Bsp143I GATC 6 cut(s) 340, 379, 459, 570, 599, 830
BspANI GGCC 3 cut(s) 809, 867, 876
BspCNI CTCAG 2 cut(s) 358, 577
BspEI TCCGGA 1 cut(s) 761
BspFNI CGCG 7 cut(s) 525, 530, 642, 647, 703, 705, 744
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 777, 948
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 5 cut(s) 335, 374, 565, 594, 838
BspQI GCTCTTC 1 cut(s) 672
BspT104I TTCGAA 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 772, 952
BsrI ACTGG 3 cut(s) 260, 491, 877
BssAI RCCGGY 2 cut(s) 772, 952
BssECI CCNNGG 5 cut(s) 94, 129, 528, 645, 868
BssHII GCGCGC 2 cut(s) 640, 701
BssMI GATC 6 cut(s) 340, 379, 459, 570, 599, 830
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 3 cut(s) 806, 869, 944
Bst4CI ACNGT 3 cut(s) 375, 536, 581
Bst6I CTCTTC 2 cut(s) 672, 718
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 4 cut(s) 642, 703, 903, 925
BstDEI CTNAG 3 cut(s) 277, 345, 564
BstDSI CCRYGG 2 cut(s) 528, 645
BstF5I GGATG 3 cut(s) 364, 600, 840
BstFNI CGCG 7 cut(s) 525, 530, 642, 647, 703, 705, 744
BstHHI GCGC 6 cut(s) 527, 642, 644, 703, 705, 746
BstKTI GATC 6 cut(s) 343, 382, 462, 573, 602, 833
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 6 cut(s) 340, 379, 459, 570, 599, 830
BstMWI GCNNNNNNNGC 4 cut(s) 637, 873, 911, 920
BstNI CCWGG 3 cut(s) 806, 869, 944
BstSCI CCNGG 3 cut(s) 804, 867, 942
BstUI CGCG 7 cut(s) 525, 530, 642, 647, 703, 705, 744
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 3 cut(s) 809, 867, 876
BtgI CCRYGG 2 cut(s) 528, 645
BtrI CACGTC 3 cut(s) 205, 847, 919
BtsCI GGATG 3 cut(s) 364, 600, 840
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 642, 703, 903, 925
CaiI CAGNNNCTG 1 cut(s) 811
CciI TCATGA 1 cut(s) 267
CfoI GCGC 6 cut(s) 527, 642, 644, 703, 705, 746
Cfr10I RCCGGY 2 cut(s) 772, 952
Cfr13I GGNCC 3 cut(s) 775, 808, 946
Cfr42I CCGCGG 2 cut(s) 531, 648
CseI GACGC 1 cut(s) 671
CsiI ACCWGGT 1 cut(s) 942
Csp6I GTAC 3 cut(s) 358, 430, 880
CspAI ACCGGT 1 cut(s) 952
CviAII CATG 4 cut(s) 224, 268, 455, 981
CviQI GTAC 3 cut(s) 358, 430, 880
DdeI CTNAG 3 cut(s) 277, 345, 564
DpnI GATC 6 cut(s) 342, 381, 461, 572, 601, 832
DpnII GATC 6 cut(s) 340, 379, 459, 570, 599, 830
DrdI GACNNNNNNGTC 1 cut(s) 296
DriI GACNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 672, 718
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 2 cut(s) 672, 718
EciI GGCGGA 2 cut(s) 134, 157
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 126, 903
Eco47I GGWCC 2 cut(s) 775, 946
Eco53kI GAGCTC 1 cut(s) 901
EcoICRI GAGCTC 1 cut(s) 901
EcoO109I RGGNCCY 2 cut(s) 808, 946
EcoRI GAATTC 2 cut(s) 313, 331
EcoRII CCWGG 3 cut(s) 804, 867, 942
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 126, 903
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 227, 271, 458, 984
FaiI YATR 6 cut(s) 225, 269, 456, 509, 735, 982
FaqI GGGAC 5 cut(s) 196, 272, 284, 761, 932
FatI CATG 4 cut(s) 223, 267, 454, 980
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 528, 645, 699, 874
FokI GGATG 3 cut(s) 351, 607, 827
FriOI GRGCYC 2 cut(s) 126, 903
Fsp4HI GCNGC 4 cut(s) 528, 645, 699, 874
FspBI CTAG 2 cut(s) 95, 575
GlaI GCGC 6 cut(s) 526, 641, 643, 702, 704, 745
GluI GCNGC 4 cut(s) 528, 645, 699, 874
GsaI CCCAGC 2 cut(s) 159, 391
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 3 cut(s) 809, 867, 876
HapII CCGG 3 cut(s) 762, 773, 953
HgaI GACGC 1 cut(s) 671
HhaI GCGC 6 cut(s) 527, 642, 644, 703, 705, 746
Hin1II CATG 4 cut(s) 227, 271, 458, 984
Hin6I GCGC 6 cut(s) 525, 640, 642, 701, 703, 744
HinP1I GCGC 6 cut(s) 525, 640, 642, 701, 703, 744
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 260, 542
HpaII CCGG 3 cut(s) 762, 773, 953
HphI GGTGA 3 cut(s) 83, 580, 958
Hpy166II GTNNAC 4 cut(s) 85, 253, 397, 430
Hpy188I TCNGA 9 cut(s) 202, 348, 355, 403, 424, 547, 626, 691, 724
Hpy188III TCNNGA 6 cut(s) 137, 268, 301, 310, 762, 778
Hpy8I GTNNAC 4 cut(s) 85, 253, 397, 430
Hpy99I CGWCG 5 cut(s) 206, 293, 616, 626, 977
HpyAV CCTTC 1 cut(s) 847
HpyCH4III ACNGT 3 cut(s) 375, 536, 581
HpyCH4IV ACGT 5 cut(s) 204, 297, 492, 846, 918
HpyCH4V TGCA 3 cut(s) 286, 364, 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 637, 873, 911, 920
HpyF3I CTNAG 3 cut(s) 277, 345, 564
HpySE526I ACGT 5 cut(s) 204, 297, 492, 846, 918
Hsp92II CATG 4 cut(s) 227, 271, 458, 984
HspAI GCGC 6 cut(s) 525, 640, 642, 701, 703, 744
Kpn2I TCCGGA 1 cut(s) 761
KspI CCGCGG 2 cut(s) 531, 648
Kzo9I GATC 6 cut(s) 340, 379, 459, 570, 599, 830
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 2 cut(s) 244, 963
LweI GCATC 4 cut(s) 373, 420, 585, 972
MabI ACCWGGT 1 cut(s) 942
MaeI CTAG 2 cut(s) 95, 575
MaeII ACGT 5 cut(s) 204, 297, 492, 846, 918
MaeIII GTNAC 1 cut(s) 446
MalI GATC 6 cut(s) 342, 381, 461, 572, 601, 832
MboI GATC 6 cut(s) 340, 379, 459, 570, 599, 830
MboII GAAGA 3 cut(s) 9, 659, 705
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 3 cut(s) 126, 903, 960
MluCI AATT 7 cut(s) 186, 313, 326, 331, 442, 515, 765
MlyI GAGTC 2 cut(s) 254, 536
MmeI TCCRAC 3 cut(s) 225, 604, 747
MroI TCCGGA 1 cut(s) 761
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 2 cut(s) 530, 647
MspI CCGG 3 cut(s) 762, 773, 953
MspR9I CCNGG 3 cut(s) 806, 869, 944
MunI CAATTG 1 cut(s) 326
MvaI CCWGG 3 cut(s) 806, 869, 944
MvnI CGCG 7 cut(s) 525, 530, 642, 647, 703, 705, 744
MwoI GCNNNNNNNGC 4 cut(s) 637, 873, 911, 920
NdeII GATC 6 cut(s) 340, 379, 459, 570, 599, 830
NlaIII CATG 4 cut(s) 227, 271, 458, 984
NlaIV GGNNCC 2 cut(s) 777, 948
NmeAIII GCCGAG 2 cut(s) 196, 931
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 267
PauI GCGCGC 2 cut(s) 640, 701
PciSI GCTCTTC 1 cut(s) 672
PcsI WCGNNNNNNNCGW 4 cut(s) 294, 399, 546, 776
PflFI GACNNNGTC 2 cut(s) 296, 728
PinAI ACCGGT 1 cut(s) 952
PkrI GCNGC 4 cut(s) 529, 646, 700, 875
PleI GAGTC 2 cut(s) 254, 536
PpsI GAGTC 2 cut(s) 254, 536
PpuMI RGGWCCY 1 cut(s) 946
PshBI ATTAAT 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 946
Psp6I CCWGG 3 cut(s) 804, 867, 942
PspFI CCCAGC 2 cut(s) 155, 387
PspGI CCWGG 3 cut(s) 804, 867, 942
PspN4I GGNNCC 2 cut(s) 777, 948
PspPI GGNCC 3 cut(s) 775, 808, 946
PspPPI RGGWCCY 1 cut(s) 946
PstNI CAGNNNCTG 1 cut(s) 811
PsyI GACNNNGTC 2 cut(s) 296, 728
PteI GCGCGC 2 cut(s) 640, 701
RsaI GTAC 3 cut(s) 359, 431, 881
RsaNI GTAC 3 cut(s) 358, 430, 880
SacI GAGCTC 1 cut(s) 903
SacII CCGCGG 2 cut(s) 531, 648
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 4 cut(s) 528, 645, 699, 874
Sau3AI GATC 6 cut(s) 340, 379, 459, 570, 599, 830
Sau96I GGNCC 3 cut(s) 775, 808, 946
SchI GAGTC 2 cut(s) 254, 536
ScrFI CCNGG 3 cut(s) 806, 869, 944
SduI GDGCHC 3 cut(s) 126, 903, 960
SexAI ACCWGGT 1 cut(s) 942
SfaNI GCATC 4 cut(s) 373, 420, 585, 972
SfiI GGCCNNNNNGGCC 1 cut(s) 873
Sfr303I CCGCGG 2 cut(s) 531, 648
SfuI TTCGAA 1 cut(s) 104
SgrAI CRCCGGYG 1 cut(s) 952
SgrBI CCGCGG 2 cut(s) 531, 648
SinI GGWCC 2 cut(s) 775, 946
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 7 cut(s) 186, 313, 326, 331, 442, 515, 765
SspMI CTAG 2 cut(s) 95, 575
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 3 cut(s) 804, 867, 942
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 375, 536, 581
TaiI ACGT 5 cut(s) 207, 300, 495, 849, 921
TaqI TCGA 8 cut(s) 104, 138, 218, 378, 540, 614, 816, 852
TasI AATT 7 cut(s) 186, 313, 326, 331, 442, 515, 765
TatI WGTACW 1 cut(s) 429
TauI GCSGC 4 cut(s) 530, 647, 701, 876
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TspDTI ATGAA 4 cut(s) 284, 496, 829, 908
TspGWI ACGGA 1 cut(s) 843
Tth111I GACNNNGTC 2 cut(s) 296, 728
VpaK11BI GGWCC 2 cut(s) 775, 946
VspI ATTAAT 1 cut(s) 518
XapI RAATTY 4 cut(s) 186, 313, 331, 765
XmaJI CCTAGG 1 cut(s) 94
XspI CTAG 2 cut(s) 95, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.